MD06G1080400.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000959
Physical Location & Seq
Forward (+)
19638186 .. 19638815
630 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1080400.v1.1.491

Sequence Viewer

Length: 630 bp
ATGGCCAAGGTTCATCCTCTTTTAACATCCAACAGTACTGGTGATGCTTCTTCCAGCTCTACTAGTACTCCATGTTCTAATAATAAGTATTTGACTTCAAAGAGAGAAACATGCACCATTTGGATGAAATCTCTTGTAATGCAAGGAAGCGGATGCACTGCGTTTGATGAAAATGGCGAGATTGTTTATCGCGTCGATAACTACGACAGCAAACACAGCAGCGAAGTCTATCTCATGGATCTCCGCGGCAAGCTTCTATTTACCCTATGTGAGAAGAAAATGTGTGGTTTTCCAAGTTGGAAGGGCTACAAAAGCAATGGTATCTGTGCCAGCAAGCCATTGTTTCGAATGAGAAAAAATTATAAATCAATTCTTGGAAATAAAGAGTGTTCTTATAAAGTTACCATGAGATCTGCAAGCAATTGCTACAGGTTAGAGGGTTTGAATAGTAAATCAACAGCTTTCAGAATTATGGACAGCAATAGAAGAGTTGTAGCAAAGGCAAAGAGAAAGCAGTCAAGGTCAGGAGTAGTATTGGGAGATGATGTATTCACATTGGCAGTGGAGCCTCATGTCGATCACTCCTTTATCATGGCCCTTGTCACTGTTTATGGCATGATACGACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

210

Amino Acids

23.47

Weight (kDa)

9.64

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 37 - 204 7.8e-37 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 363, 396
AccII CGCG 2 cut(s) 192, 246
AciI CCGC 3 cut(s) 150, 244, 246
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 37, 67
AgsI TTSAA 2 cut(s) 99, 445
AhlI ACTAGT 1 cut(s) 62
AluBI AGCT 3 cut(s) 57, 253, 461
AluI AGCT 3 cut(s) 57, 253, 461
AlwI GGATC 1 cut(s) 246
AoxI GGCC 2 cut(s) 3, 594
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 346
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 231
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 427
BglII AGATCT 1 cut(s) 410
BisI GCNGC 2 cut(s) 220, 247
BlsI GCNGC 2 cut(s) 221, 248
BmcAI AGTACT 2 cut(s) 37, 67
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 567
BmsI GCATC 2 cut(s) 34, 143
Bpu14I TTCGAA 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 6, 244
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 531, 561
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 6, 244
BseGI GGATG 4 cut(s) 13, 26, 129, 158
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 2 cut(s) 192, 246
BshFI GGCC 2 cut(s) 5, 596
BsnI GGCC 2 cut(s) 5, 596
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 238, 410, 577
BspACI CCGC 3 cut(s) 150, 244, 246
BspANI GGCC 2 cut(s) 5, 596
BspFNI CGCG 2 cut(s) 192, 246
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 6, 244
BssMI GATC 3 cut(s) 238, 410, 577
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 35, 607
Bst6I CTCTTC 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 4 cut(s) 251, 331, 335, 418
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 4 cut(s) 13, 26, 129, 158
BstFNI CGCG 2 cut(s) 192, 246
BstKTI GATC 3 cut(s) 241, 413, 580
BstMBI GATC 3 cut(s) 238, 410, 577
BstMWI GCNNNNNNNGC 2 cut(s) 216, 312
BstNSI RCATGY 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 2 cut(s) 192, 246
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 238, 410
BstYI RGATCY 2 cut(s) 238, 410
BsuRI GGCC 2 cut(s) 5, 596
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 4 cut(s) 13, 26, 129, 158
BtsI GCAGTG 2 cut(s) 156, 567
BtsIMutI CAGTG 3 cut(s) 156, 567, 603
Cac8I GCNNGC 4 cut(s) 251, 331, 335, 418
Cfr13I GGNCC 1 cut(s) 595
Cfr42I CCGCGG 1 cut(s) 247
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 36, 66
CviAII CATG 7 cut(s) 72, 111, 235, 406, 572, 592, 616
CviJI RGCY 8 cut(s) 5, 57, 253, 306, 337, 461, 568, 596
CviKI_1 RGCY 8 cut(s) 5, 57, 253, 306, 337, 461, 568, 596
CviQI GTAC 2 cut(s) 36, 66
DpnI GATC 3 cut(s) 240, 412, 579
DpnII GATC 3 cut(s) 238, 410, 577
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 7 cut(s) 75, 114, 238, 409, 575, 595, 619
FatI CATG 7 cut(s) 71, 110, 234, 405, 571, 591, 615
Fnu4HI GCNGC 2 cut(s) 220, 247
FokI GGATG 3 cut(s) 13, 136, 165
Fsp4HI GCNGC 2 cut(s) 220, 247
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 220, 247
HaeIII GGCC 2 cut(s) 5, 596
HgaI GACGC 1 cut(s) 181
Hin1II CATG 7 cut(s) 75, 114, 238, 409, 575, 595, 619
HindIII AAGCTT 1 cut(s) 251
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 467
Hpy188III TCNNGA 1 cut(s) 525
Hpy99I CGWCG 2 cut(s) 197, 627
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 35, 607
HpyCH4V TGCA 4 cut(s) 114, 142, 156, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 312
Hsp92II CATG 7 cut(s) 75, 114, 238, 409, 575, 595, 619
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 3 cut(s) 238, 410, 577
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 5 cut(s) 24, 67, 343, 415, 510
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 2 cut(s) 34, 143
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 400, 601
MalI GATC 3 cut(s) 240, 412, 579
MboI GATC 3 cut(s) 238, 410, 577
MboII GAAGA 3 cut(s) 42, 286, 498
MfeI CAATTG 1 cut(s) 421
MflI RGATCY 2 cut(s) 238, 410
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 358, 369, 421, 468
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 54, 278
MnlI CCTC 3 cut(s) 27, 430, 579
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 246
MunI CAATTG 1 cut(s) 421
MvnI CGCG 2 cut(s) 192, 246
MwoI GCNNNNNNNGC 2 cut(s) 216, 312
NdeII GATC 3 cut(s) 238, 410, 577
NlaIII CATG 7 cut(s) 75, 114, 238, 409, 575, 595, 619
NlaIV GGNNCC 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 114
NspV TTCGAA 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PkrI GCNGC 2 cut(s) 221, 248
PsiI TTATAA 2 cut(s) 363, 396
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 595
PsrI GAACNNNNNNTAC 2 cut(s) 58, 90
PsuI RGATCY 2 cut(s) 238, 410
RsaI GTAC 2 cut(s) 37, 67
RsaNI GTAC 2 cut(s) 36, 66
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 220, 247
Sau3AI GATC 3 cut(s) 238, 410, 577
Sau96I GGNCC 1 cut(s) 595
ScaI AGTACT 2 cut(s) 37, 67
SetI ASST 6 cut(s) 12, 59, 255, 434, 463, 524
SfaNI GCATC 2 cut(s) 34, 143
SfcI CTRYAG 1 cut(s) 427
Sfr303I CCGCGG 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 346
SgrBI CCGCGG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 4 cut(s) 358, 369, 421, 468
SsiI CCGC 3 cut(s) 150, 244, 246
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 35, 607
TaqI TCGA 3 cut(s) 195, 346, 576
TasI AATT 4 cut(s) 358, 369, 421, 468
TatI WGTACW 2 cut(s) 35, 65
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 3 cut(s) 163, 567, 610
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 2 cut(s) 140, 183
TspRI CASTG 3 cut(s) 163, 567, 610
XceI RCATGY 1 cut(s) 114
XspI CTAG 1 cut(s) 63
ZrmI AGTACT 2 cut(s) 37, 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.