MD14G1099700.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000959
Physical Location & Seq
Reverse (-)
15344866 .. 15345417
552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1099700.v1.1.491

Sequence Viewer

Length: 552 bp
ATGACTTCAAAGAGAGAAACCTTCACTATATGGATGAAATCGCTTGTGATGCAAGGAAATGGGTGCACTACCTTTGATGAAAATGGAAAAGTTGTTTATCGCATAGATAACTACGACAACAAGCACAACAACAAAGTTTATCTCATGGATCTCCGCGGGAAACTTCTCTTTACTCTAGGTGAGAAGAAAATGAGCGTTTTTACAAGTTGGAATGGGTACAAAGGCAACGATATTGGTGCCAAGAAGCGAATGTTTCAAGTGAGAAAAAGTTGTAGAATTAATCTTGGAAATAAAGCCTGTTCTTGTAAAGTAACAATGGGATCTGATAGAAATTGCTACAAGTTAGAGGGTTTGAATTGTAAATCATCATTATCAACTTTCAGAATAAGAGACAGCAATGGAAGAATTGTAGCAGAGGCAAAGAGAAAGCAGTCAAGTTCAGGAGTAGTTTTTGGAGATGATGTGCTGACTTTGGTGGTGGAGCCTCACGTTGATCACTCCTTCATCATGGCTCTTGTCACTGTTTATGGCTTAATTAGACATCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

184

Amino Acids

20.75

Weight (kDa)

9.7

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 7 - 176 1.7e-35 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 154, 156
AclWI GGATC 2 cut(s) 156, 328
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 3 cut(s) 9, 257, 355
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 384
Alw44I GTGCAC 1 cut(s) 64
AlwI GGATC 2 cut(s) 156, 328
ApaLI GTGCAC 1 cut(s) 64
AseI ATTAAT 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 238, 483
BmsI GCATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bse3DI GCAATG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 2 cut(s) 39, 541
BseMI GCAATG 1 cut(s) 403
BseSI GKGCMC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 148, 320, 493
BspACI CCGC 2 cut(s) 154, 156
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 238, 483
BspPI GGATC 2 cut(s) 156, 328
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 148, 320, 493
Bst4CI ACNGT 1 cut(s) 523
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 2 cut(s) 39, 541
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 3 cut(s) 151, 323, 496
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 3 cut(s) 148, 320, 493
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 68
BstUI CGCG 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 148, 320
BstYI RGATCY 2 cut(s) 148, 320
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 2 cut(s) 39, 541
BtsIMutI CAGTG 1 cut(s) 519
Cfr42I CCGCGG 1 cut(s) 157
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 145, 508
CviJI RGCY 4 cut(s) 296, 484, 512, 531
CviKI_1 RGCY 4 cut(s) 296, 484, 512, 531
CviQI GTAC 1 cut(s) 217
DpnI GATC 3 cut(s) 150, 322, 495
DpnII GATC 3 cut(s) 148, 320, 493
FaeI CATG 2 cut(s) 148, 511
FaiI YATR 7 cut(s) 29, 31, 104, 146, 509, 528, 550
FatI CATG 2 cut(s) 144, 507
FauI CCCGC 1 cut(s) 149
FbaI TGATCA 1 cut(s) 493
FokI GGATG 2 cut(s) 46, 528
FspBI CTAG 1 cut(s) 176
Hin1II CATG 2 cut(s) 148, 511
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 325, 383
Hpy188III TCNNGA 1 cut(s) 441
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 31, 511
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 2 cut(s) 52, 66
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 2 cut(s) 148, 511
Ksp22I TGATCA 1 cut(s) 493
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 3 cut(s) 148, 320, 493
LmnI GCTCC 1 cut(s) 481
LpnPI CCDG 2 cut(s) 310, 426
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 310, 517
MalI GATC 3 cut(s) 150, 322, 495
MboI GATC 3 cut(s) 148, 320, 493
MboII GAAGA 2 cut(s) 196, 414
MflI RGATCY 2 cut(s) 148, 320
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 5 cut(s) 276, 331, 355, 405, 534
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 3 cut(s) 340, 409, 495
MseI TTAA 2 cut(s) 279, 533
MspA1I CMGCKG 1 cut(s) 156
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 3 cut(s) 148, 320, 493
NlaIII CATG 2 cut(s) 148, 511
NlaIV GGNNCC 2 cut(s) 238, 483
NmuCI GTSAC 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 238, 483
PsuI RGATCY 2 cut(s) 148, 320
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacII CCGCGG 1 cut(s) 157
SaqAI TTAA 2 cut(s) 279, 533
Sau3AI GATC 3 cut(s) 148, 320, 493
SduI GDGCHC 1 cut(s) 68
SetI ASST 4 cut(s) 23, 74, 181, 492
SfaNI GCATC 1 cut(s) 39
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
Sse9I AATT 5 cut(s) 276, 331, 355, 405, 534
SsiI CCGC 2 cut(s) 154, 156
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 492
TasI AATT 5 cut(s) 276, 331, 355, 405, 534
Tru1I TTAA 2 cut(s) 279, 533
Tru9I TTAA 2 cut(s) 279, 533
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 50, 93, 493
TspRI CASTG 1 cut(s) 526
VneI GTGCAC 1 cut(s) 64
VspI ATTAAT 1 cut(s) 279
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.