MD14G1099500.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000959
Physical Location & Seq
Reverse (-)
15324314 .. 15324721
408 bp
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UTR
Exon/CDS
Intron
MD14G1099500.v1.1.491

Sequence Viewer

Length: 408 bp
ATGGATCTCCACGGCAAGCTTCTGTTTACTGTATTTGAGAAGAAAATGTGTGGTTTCCCAAATTGGAAAGGCTATGAAAGCAATCATAACATTGGTGCCAATAAGCCAACGTTTCAAGTTAGAAAAAGTTGCAGATTTGTTCTTGGAAGTAAAGTGTCTTTATATAAAGTAACGATGCGATCTGTTAGCGATTGCTACAGTTTAGAGGGTTCGAACGGTAAATCAGCATCAGCTTTCATAGTAAGAGACAACAATGGAGGAATTGTAGCAGAAGCCAAGCAAAAGCAGTCAAGTTCAGGAGTAGTATTGGGAGATGATGTAATGACTTTGTTTGTGGAGGCTCATGTGGATCATTCCTTTATCATGGCTCTAGTCATTGTTTATGGCTTAATTAGGCATCAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

136

Amino Acids

14.93

Weight (kDa)

9.22

Isoelectric Point (pI)

24.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 1 - 128 2.2e-18 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AclI AACGTT 1 cut(s) 110
AclWI GGATC 2 cut(s) 12, 357
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 2 cut(s) 19, 233
AluI AGCT 2 cut(s) 19, 233
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 12, 357
AsuII TTCGAA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 2 cut(s) 165, 236
Bpu14I TTCGAA 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 303, 333
BseDI CCNNGG 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 212
Bsp143I GATC 3 cut(s) 4, 179, 349
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 2 cut(s) 12, 357
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 4, 179, 349
Bst4CI ACNGT 3 cut(s) 31, 200, 218
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 10
BstKTI GATC 3 cut(s) 7, 182, 352
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 3 cut(s) 4, 179, 349
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 17
CviAII CATG 2 cut(s) 344, 364
CviJI RGCY 8 cut(s) 19, 72, 106, 233, 275, 341, 368, 387
CviKI_1 RGCY 8 cut(s) 19, 72, 106, 233, 275, 341, 368, 387
DpnI GATC 3 cut(s) 6, 181, 351
DpnII GATC 3 cut(s) 4, 179, 349
FaeI CATG 2 cut(s) 347, 367
FaiI YATR 9 cut(s) 75, 87, 163, 165, 239, 345, 365, 384, 406
FatI CATG 2 cut(s) 343, 363
FspBI CTAG 1 cut(s) 371
Hin1II CATG 2 cut(s) 347, 367
HindIII AAGCTT 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4III ACNGT 3 cut(s) 31, 200, 218
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 347, 367
Kzo9I GATC 3 cut(s) 4, 179, 349
LpnPI CCDG 1 cut(s) 282
LweI GCATC 2 cut(s) 165, 236
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 6, 181, 351
MboI GATC 3 cut(s) 4, 179, 349
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 61, 261, 390, 401
MnlI CCTC 3 cut(s) 199, 251, 331
MseI TTAA 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 3 cut(s) 4, 179, 349
NlaIII CATG 2 cut(s) 347, 367
NlaIV GGNNCC 1 cut(s) 97
NspV TTCGAA 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 3 cut(s) 4, 179, 349
SetI ASST 3 cut(s) 21, 113, 235
SfaNI GCATC 2 cut(s) 165, 236
SfcI CTRYAG 1 cut(s) 196
SfuI TTCGAA 1 cut(s) 212
Sse9I AATT 4 cut(s) 61, 261, 390, 401
SspMI CTAG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 31, 200, 218
TaiI ACGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 212
TasI AATT 4 cut(s) 61, 261, 390, 401
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 90, 226
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.