Rh7BG173700

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000959
Physical Location & Seq
Forward (+)
13617995 .. 13619047
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG173700.1

Sequence Viewer

Length: 693 bp
ATGGGAGTACTCTCACACCAAACTAAGCCTGTCGTCCCCAAAACCAAAGAGCTCTCTCATCTCTGCTCTCATATGGCCAAGGTTCATCCTCTCACAGTAGTACCCACTGAAGATGCTTCTTCAAGTACTACTTCATGTTCTAATAAATATATGACTTCAAAAAGAGAAACATTCACAGTATGGATGAAATCGCTTTTGATGCAAGGAAATGGATGCACAGCCTTCAACGAAACTGGCGAGGTTGTGTATCGCATCGACAACTATGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCGCGGCAAGGTTCTCTTCACTCTATGTGAGCACAAAATGGGAGTGTTTACGCGTTGGAAGGGCTACGCAGCCGATGGGGCAAAGCCAATGTTTCGAGTAAGAAAGAGTTGCAGATCAATCTTCGGAAACGAAGAGTCAAGTTCATACGAAGTAACCATGGGATCTGATAGCAGTTTCTACAGGTTAAGAAGTTTGTCGGCCGGAAAATCAGCAGCCTTCAGAATAACAGACAGTAACGGAAGAGTTGTGGCGGAGGCGAAGCGAAAGCAATCGTCTTCAGGAGTTGTGTTGGGAGATGATGTACTGAGTTTGGTAGTGGAGGCTGATGTAGATCACTCCTTTATCATGGCTCTTGTTACTGTCTATGGTTTAATCAAGCGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

230

Amino Acids

25.55

Weight (kDa)

9.04

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 57 - 223 1.5e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 306, 355
AciI CCGC 3 cut(s) 304, 306, 554
AclWI GGATC 2 cut(s) 306, 472
AcoI YGGCCR 2 cut(s) 75, 501
AcuI CTGAAG 3 cut(s) 129, 505, 564
AfaI GTAC 4 cut(s) 9, 102, 127, 606
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 3 cut(s) 123, 159, 226
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 2 cut(s) 54, 336
AlwI GGATC 2 cut(s) 306, 472
AoxI GGCC 2 cut(s) 75, 501
ApeKI GCWGC 2 cut(s) 371, 515
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 280, 570
Bbv12I GWGCWC 2 cut(s) 54, 336
BbvI GCAGC 2 cut(s) 383, 527
BccI CCATC 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 481
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 3 cut(s) 307, 372, 516
BlsI GCNGC 3 cut(s) 308, 373, 517
BmcAI AGTACT 2 cut(s) 9, 127
BmsI GCATC 4 cut(s) 103, 189, 203, 261
BpiI GAAGAC 2 cut(s) 280, 570
BsaBI GATNNNNATC 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 78, 304, 459
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 633
BseDI CCNNGG 3 cut(s) 78, 304, 459
BseGI GGATG 3 cut(s) 85, 189, 218
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 501
BseXI GCAGC 2 cut(s) 383, 527
Bsh1236I CGCG 2 cut(s) 306, 355
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 2 cut(s) 77, 503
BsiEI CGRYCG 1 cut(s) 504
BsiHKAI GWGCWC 2 cut(s) 54, 336
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 2 cut(s) 77, 503
Bsp1286I GDGCHC 2 cut(s) 54, 336
Bsp143I GATC 4 cut(s) 298, 416, 464, 634
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 3 cut(s) 304, 306, 554
BspANI GGCC 2 cut(s) 77, 503
BspCNI CTCAG 1 cut(s) 600
BspFNI CGCG 2 cut(s) 306, 355
BspPI GGATC 2 cut(s) 306, 472
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 78, 304, 459
BssMI GATC 4 cut(s) 298, 416, 464, 634
BssT1I CCWWGG 2 cut(s) 78, 459
Bst4CI ACNGT 4 cut(s) 97, 178, 536, 664
Bst6I CTCTTC 3 cut(s) 323, 429, 538
BstDEI CTNAG 2 cut(s) 24, 608
BstDSI CCRYGG 2 cut(s) 304, 459
BstF5I GGATG 3 cut(s) 85, 189, 218
BstFNI CGCG 2 cut(s) 306, 355
BstKTI GATC 4 cut(s) 301, 419, 467, 637
BstMBI GATC 4 cut(s) 298, 416, 464, 634
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 2 cut(s) 199, 380
BstSFI CTRYAG 1 cut(s) 481
BstUI CGCG 2 cut(s) 306, 355
BstV1I GCAGC 2 cut(s) 383, 527
BstV2I GAAGAC 2 cut(s) 280, 570
BstX2I RGATCY 2 cut(s) 298, 464
BstYI RGATCY 2 cut(s) 298, 464
BstZI CGGCCG 1 cut(s) 501
BsuRI GGCC 2 cut(s) 77, 503
BtgI CCRYGG 2 cut(s) 304, 459
BtsCI GGATG 3 cut(s) 85, 189, 218
BtsIMutI CAGTG 1 cut(s) 105
Cfr42I CCGCGG 1 cut(s) 307
CseI GACGC 1 cut(s) 671
Csp6I GTAC 4 cut(s) 8, 101, 126, 605
CviAII CATG 4 cut(s) 135, 295, 460, 649
CviQI GTAC 4 cut(s) 8, 101, 126, 605
DdeI CTNAG 2 cut(s) 24, 608
DpnI GATC 4 cut(s) 300, 418, 466, 636
DpnII GATC 4 cut(s) 298, 416, 464, 634
EaeI YGGCCR 2 cut(s) 75, 501
EagI CGGCCG 1 cut(s) 501
Eam1104I CTCTTC 3 cut(s) 323, 429, 538
EarI CTCTTC 3 cut(s) 323, 429, 538
EciI GGCGGA 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 78, 459
Eco24I GRGCYC 1 cut(s) 54
Eco52I CGGCCG 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 3 cut(s) 129, 505, 564
EcoICRI GAGCTC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 78, 459
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 78, 459
FaeI CATG 4 cut(s) 138, 298, 463, 652
FalI AAGNNNNNCTT 4 cut(s) 115, 147, 302, 334
FaqI GGGAC 1 cut(s) 20
FatI CATG 4 cut(s) 134, 294, 459, 648
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 307, 372, 516
FokI GGATG 3 cut(s) 72, 196, 225
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 307, 372, 516
GluI GCNGC 3 cut(s) 307, 372, 516
HaeIII GGCC 2 cut(s) 77, 503
HapII CCGG 1 cut(s) 504
HgaI GACGC 1 cut(s) 671
Hin1II CATG 4 cut(s) 138, 298, 463, 652
HinfI GANTC 1 cut(s) 437
HpaII CCGG 1 cut(s) 504
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 3 cut(s) 428, 469, 524
Hpy188III TCNNGA 1 cut(s) 582
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 3 cut(s) 232, 355, 529
HpyCH4III ACNGT 4 cut(s) 97, 178, 536, 664
HpyCH4V TGCA 3 cut(s) 202, 216, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 380
HpyF3I CTNAG 2 cut(s) 24, 608
Hsp92II CATG 4 cut(s) 138, 298, 463, 652
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 4 cut(s) 298, 416, 464, 634
LpnPI CCDG 5 cut(s) 42, 219, 469, 517, 567
Lsp1109I GCAGC 2 cut(s) 383, 527
LweI GCATC 4 cut(s) 103, 189, 203, 261
MaeIII GTNAC 3 cut(s) 454, 536, 658
MalI GATC 4 cut(s) 300, 418, 466, 636
MboI GATC 4 cut(s) 298, 416, 464, 634
MboII GAAGA 8 cut(s) 111, 122, 280, 310, 415, 446, 555, 570
MflI RGATCY 2 cut(s) 298, 464
MhlI GDGCHC 2 cut(s) 54, 336
MlsI TGGCCA 1 cut(s) 77
MluI ACGCGT 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 5 cut(s) 99, 232, 302, 550, 616
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 2 cut(s) 488, 674
MslI CAYNNNNRTG 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 1 cut(s) 504
MvnI CGCG 2 cut(s) 306, 355
MwoI GCNNNNNNNGC 2 cut(s) 199, 380
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 1 cut(s) 72
NdeII GATC 4 cut(s) 298, 416, 464, 634
NlaIII CATG 4 cut(s) 138, 298, 463, 652
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PkrI GCNGC 3 cut(s) 308, 373, 517
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 54
PsuI RGATCY 2 cut(s) 298, 464
RsaI GTAC 4 cut(s) 9, 102, 127, 606
RsaNI GTAC 4 cut(s) 8, 101, 126, 605
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 54
SacII CCGCGG 1 cut(s) 307
SaqAI TTAA 2 cut(s) 488, 674
SatI GCNGC 3 cut(s) 307, 372, 516
Sau3AI GATC 4 cut(s) 298, 416, 464, 634
ScaI AGTACT 2 cut(s) 9, 127
SchI GAGTC 1 cut(s) 446
SduI GDGCHC 2 cut(s) 54, 336
SetI ASST 5 cut(s) 54, 84, 243, 315, 488
SfaNI GCATC 4 cut(s) 103, 189, 203, 261
SfcI CTRYAG 1 cut(s) 481
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 279
SsiI CCGC 3 cut(s) 304, 306, 554
SstI GAGCTC 1 cut(s) 54
StyI CCWWGG 2 cut(s) 78, 459
TaaI ACNGT 4 cut(s) 97, 178, 536, 664
TaqI TCGA 2 cut(s) 255, 397
TatI WGTACW 3 cut(s) 7, 125, 604
TauI GCSGC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 488, 674
Tru9I TTAA 2 cut(s) 488, 674
TscAI CASTG 1 cut(s) 112
TseI GCWGC 2 cut(s) 371, 515
TspDTI ATGAA 5 cut(s) 74, 123, 200, 297, 435
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 1 cut(s) 112
ZrmI AGTACT 2 cut(s) 9, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.