Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

28211724 .. 28212526

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAAAGGTTTACCCCCAAGCACCACTACTTTCTTCTTCTTCATCCTCTGGCTATCTCACGTCAAAACAAGAAACGTTCACAATATGGATGAAATCTCTCATAGTGAACGGCCATGGTTGCACTGTTTTTGATTCTAACGGTCAGATCGTGTATCGTGTAGATAATTACGACTCTAGAGGCAGAGCTAAAGTTCATCTAATGGATTTGAAAGGCCAGATCCTATTCAGCATACTGAGAAAGAAATCCAAATTTCTTGGTGTCTGGGAGGGATACAGATCCAGTAATGGTAAAGAGATCAACCCGAAAAACACACCCAGCTTTCAAGTAAGGAGATGCTTCAAAGGCAAGTCAGCATGCAAAGTCATCGTGGGACTAGACAAGAATCAGATACAGCAATACAGAATAGAGAGCTGGAGTTCTGGAAAGTCAGCCTGCAAGATACTAGACAAGTCTGGAAGACTTGTTGCCGAGGTAGTAACACTTTTCGATGTTAATTTGTTCGACCATGCACATATAGCTTGCTACCGATCGATGATTTTCATATCATACTGGTTGATGGTGCTAAAACAGGTAAAGAGAAAGCAGTCAACATGTGGAGTGGTACTGGGAGAAGATGTTTTGACACTGGTAGTAGAACCCTTCATGGATCACTCTCTTATTGTAGGGCTTCTTGTTGTGTATGGTCTCATCAACCGTAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

236

Amino Acids

26.53

Weight (kDa)

9.7

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	26 - 160	2.1e-24	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	3 cut(s)	214, 273, 657
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	1 cut(s)	606
AflIII	ACRYGT	1 cut(s)	593
AgsI	TTSAA	3 cut(s)	211, 326, 343
AjiI	CACGTC	1 cut(s)	63
AluBI	AGCT	4 cut(s)	188, 321, 414, 521
AluI	AGCT	4 cut(s)	188, 321, 414, 521
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	3 cut(s)	214, 273, 657
AoxI	GGCC	2 cut(s)	112, 214
ApoI	RAATTY	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	466
BccI	CCATC	1 cut(s)	553
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciVI	GTATCC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	3 cut(s)	177, 377, 446
BfuI	GTATCC	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	436
Bsa29I	ATCGAT	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	2 cut(s)	115, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bse1I	ACTGG	4 cut(s)	282, 557, 612, 633
Bse8I	GATNNNNATC	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	115, 471
BseGI	GGATG	2 cut(s)	44, 96
BseJI	GATNNNNATC	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	4 cut(s)	282, 557, 612, 633
BseYI	CCCAGC	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	533
BshFI	GGCC	2 cut(s)	114, 216
BshVI	ATCGAT	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	114, 216
Bso31I	GGTCTC	1 cut(s)	692
Bsp143I	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
Bsp19I	CCATGG	1 cut(s)	115
BspANI	GGCC	2 cut(s)	114, 216
BspCNI	CTCAG	1 cut(s)	228
BspDI	ATCGAT	1 cut(s)	533
BspPI	GGATC	3 cut(s)	214, 273, 657
BspTNI	GGTCTC	1 cut(s)	692
BsrI	ACTGG	4 cut(s)	282, 557, 612, 633
BssECI	CCNNGG	2 cut(s)	115, 471
BssMI	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	3 cut(s)	127, 143, 698
BstC8I	GCNNGC	3 cut(s)	358, 436, 523
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	44, 96
BstKTI	GATC	6 cut(s)	150, 222, 281, 300, 533, 652
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
BstMCI	CGRYCG	1 cut(s)	533
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 345, 518
BstNSI	RCATGY	2 cut(s)	360, 597
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	219, 278
BstYI	RGATCY	2 cut(s)	219, 278
Bsu15I	ATCGAT	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	114, 216
BsuTUI	ATCGAT	1 cut(s)	533
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	44, 96
BtsIMutI	CAGTG	2 cut(s)	123, 626
Cac8I	GCNNGC	3 cut(s)	358, 436, 523
ClaI	ATCGAT	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	5 cut(s)	116, 357, 509, 594, 646
CviJI	RGCY	9 cut(s)	54, 114, 188, 216, 321, 414, 434, 521, 670
CviKI_1	RGCY	9 cut(s)	54, 114, 188, 216, 321, 414, 434, 521, 670
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	6 cut(s)	149, 221, 280, 299, 532, 651
DpnII	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
EaeI	YGGCCR	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	692
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	5 cut(s)	119, 360, 512, 597, 649
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	5 cut(s)	115, 356, 508, 593, 645
FokI	GGATG	2 cut(s)	31, 103
FspBI	CTAG	3 cut(s)	177, 377, 446
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	114, 216
Hin1II	CATG	5 cut(s)	119, 360, 512, 597, 649
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	3 cut(s)	134, 173, 385
Hpy166II	GTNNAC	4 cut(s)	13, 81, 109, 591
Hpy188I	TCNGA	2 cut(s)	147, 390
Hpy188III	TCNNGA	3 cut(s)	177, 423, 456
Hpy8I	GTNNAC	4 cut(s)	13, 81, 109, 591
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	3 cut(s)	127, 143, 698
HpyCH4IV	ACGT	2 cut(s)	62, 77
HpyCH4V	TGCA	4 cut(s)	123, 360, 438, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 345, 518
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	2 cut(s)	62, 77
Hsp92II	CATG	5 cut(s)	119, 360, 512, 597, 649
Kzo9I	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	3 cut(s)	177, 377, 446
MaeII	ACGT	2 cut(s)	62, 77
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	6 cut(s)	149, 221, 280, 299, 532, 651
MboI	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
MboII	GAAGA	5 cut(s)	27, 30, 33, 471, 626
MflI	RGATCY	2 cut(s)	219, 278
MluCI	AATT	4 cut(s)	166, 251, 496, 701
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	58, 173, 262, 466
MseI	TTAA	1 cut(s)	495
MwoI	GCNNNNNNNGC	3 cut(s)	120, 345, 518
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
NlaIII	CATG	5 cut(s)	119, 360, 512, 597, 649
NmeAIII	GCCGAG	1 cut(s)	496
NspI	RCATGY	2 cut(s)	360, 597
PaeI	GCATGC	1 cut(s)	360
PciI	ACATGT	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	134, 385
Ple19I	CGATCG	1 cut(s)	533
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	593
Psp1406I	AACGTT	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	219, 278
PvuI	CGATCG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	495
Sau3AI	GATC	6 cut(s)	147, 219, 278, 297, 530, 649
SchI	GAGTC	1 cut(s)	167
SetI	ASST	9 cut(s)	12, 65, 80, 190, 323, 416, 477, 523, 576
SfaNI	GCATC	1 cut(s)	326
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	4 cut(s)	166, 251, 496, 701
SspMI	CTAG	3 cut(s)	177, 377, 446
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	127, 143, 698
TaiI	ACGT	2 cut(s)	65, 80
TaqI	TCGA	3 cut(s)	489, 504, 533
TasI	AATT	4 cut(s)	166, 251, 496, 701
TfiI	GAWTC	2 cut(s)	134, 385
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	130, 633
TspDTI	ATGAA	5 cut(s)	33, 107, 185, 532, 634
TspRI	CASTG	2 cut(s)	130, 633
XapI	RAATTY	1 cut(s)	251
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	2 cut(s)	360, 597
XspI	CTAG	3 cut(s)	177, 377, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.