Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

15580997 .. 15582344

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG180800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGAAGGTTCATCCTGTAACAGTAGTCACCAATATTGAAGATGGTTCTTCAAGTACATCTTGTTCCATCTTGTTCCAAGAACTATACATGAATTCAAAGAGAGAAACATTATCCCTGGTGATGCAAGGAAATGGATGCACAGCTTTCGACGAAAATGGTGAGATCGTTTATCGCCTGGATAACTACGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCACGGCAAGGTTCTCTTCACTCTATGTGAGCATAGAGTGGGAATACTTTCGCGTTGGAAGGGCTACGCAACCAACGGGGCTAAGCCAATGTTTCGAGTGAGAAAGAGTTGCAGATCATTCCTCGGAAACAAAGATTCTAGTAACTCGTACAAAGTAAGCATGAGATCCGACGGAAGTTGCTACAGGTTACAAGGTTTGGCGGCTGGAAAATCAGCAGCTTTCAGATTAACTGACAGTAACGGAAGAATTGTGGGTGGAGGCAAAGCAAAAGCAATCATCTTCAGGTGTTGTGTTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

176

Amino Acids

19.46

Weight (kDa)

9.33

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	39 - 160	4.9e-16	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	280
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	2 cut(s)	231, 387
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	2 cut(s)	58, 377
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	41, 54, 99
AjnI	CCWGG	2 cut(s)	117, 177
AluBI	AGCT	2 cut(s)	146, 446
AluI	AGCT	2 cut(s)	146, 446
AlwI	GGATC	2 cut(s)	231, 387
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	22, 133, 173
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	38, 77
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	2 cut(s)	119, 179
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	2 cut(s)	429, 444
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	2 cut(s)	430, 445
Bme1390I	CCNGG	2 cut(s)	119, 179
BmrFI	CCNGG	2 cut(s)	119, 179
BmsI	GCATC	2 cut(s)	114, 128
BpiI	GAAGAC	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	117, 229, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	119, 179
BseDI	CCNNGG	3 cut(s)	117, 229, 349
BseGI	GGATG	2 cut(s)	13, 143
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	165, 223, 341, 392
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	428
BspFNI	CGCG	1 cut(s)	280
BspPI	GGATC	2 cut(s)	231, 387
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	3 cut(s)	117, 229, 349
BssMI	GATC	4 cut(s)	165, 223, 341, 392
Bst2UI	CCWGG	2 cut(s)	119, 179
Bst4CI	ACNGT	2 cut(s)	25, 464
Bst6I	CTCTTC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	13, 143
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	4 cut(s)	168, 226, 344, 395
BstMBI	GATC	4 cut(s)	165, 223, 341, 392
BstNI	CCWGG	2 cut(s)	119, 179
BstSCI	CCNGG	2 cut(s)	117, 177
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	223, 392
BstYI	RGATCY	2 cut(s)	223, 392
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	13, 143
Csp6I	GTAC	2 cut(s)	57, 376
CviAII	CATG	3 cut(s)	91, 220, 388
CviJI	RGCY	6 cut(s)	146, 291, 308, 313, 431, 446
CviKI_1	RGCY	6 cut(s)	146, 291, 308, 313, 431, 446
CviQI	GTAC	2 cut(s)	57, 376
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	4 cut(s)	167, 225, 343, 394
DpnII	GATC	4 cut(s)	165, 223, 341, 392
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	117, 177
FaeI	CATG	3 cut(s)	94, 223, 391
FaiI	YATR	6 cut(s)	88, 92, 221, 253, 261, 389
FalI	AAGNNNNNCTT	4 cut(s)	46, 78, 227, 259
FatI	CATG	3 cut(s)	90, 219, 387
Fnu4HI	GCNGC	2 cut(s)	429, 444
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	429, 444
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	2 cut(s)	429, 444
Hin1II	CATG	3 cut(s)	94, 223, 391
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	3 cut(s)	22, 133, 173
Hpy188I	TCNGA	3 cut(s)	353, 397, 452
Hpy99I	CGWCG	3 cut(s)	155, 194, 401
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	25, 464
HpyCH4V	TGCA	3 cut(s)	127, 141, 339
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	94, 223, 391
Kzo9I	GATC	4 cut(s)	165, 223, 341, 392
LpnPI	CCDG	8 cut(s)	30, 104, 131, 164, 191, 397, 417, 496
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	114, 128
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	5 cut(s)	19, 28, 368, 414, 464
MalI	GATC	4 cut(s)	167, 225, 343, 394
MboI	GATC	4 cut(s)	165, 223, 341, 392
MboII	GAAGA	6 cut(s)	42, 53, 205, 235, 483, 499
MflI	RGATCY	2 cut(s)	223, 392
MluCI	AATT	2 cut(s)	94, 474
MmeI	TCCRAC	2 cut(s)	263, 420
MnlI	CCTC	3 cut(s)	227, 359, 479
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	119, 179
MvaI	CCWGG	2 cut(s)	119, 179
MvnI	CGCG	1 cut(s)	280
NdeII	GATC	4 cut(s)	165, 223, 341, 392
NlaIII	CATG	3 cut(s)	94, 223, 391
NmuCI	GTSAC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	430, 445
Psp6I	CCWGG	2 cut(s)	117, 177
PspGI	CCWGG	2 cut(s)	117, 177
PsrI	GAACNNNNNNTAC	2 cut(s)	49, 81
PsuI	RGATCY	2 cut(s)	223, 392
RsaI	GTAC	2 cut(s)	58, 377
RsaNI	GTAC	2 cut(s)	57, 376
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	2 cut(s)	429, 444
Sau3AI	GATC	4 cut(s)	165, 223, 341, 392
ScrFI	CCNGG	2 cut(s)	119, 179
SetI	ASST	7 cut(s)	12, 148, 240, 416, 424, 448, 515
SfaNI	GCATC	2 cut(s)	114, 128
SfcI	CTRYAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	94, 474
SsiI	CCGC	1 cut(s)	428
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	117, 177
TaaI	ACNGT	2 cut(s)	25, 464
TaqI	TCGA	2 cut(s)	150, 322
TasI	AATT	2 cut(s)	94, 474
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	107, 222
TspGWI	ACGGA	2 cut(s)	414, 483
XapI	RAATTY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.