pycom06g07750

LURP-one-related

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
12644956 .. 12645567
612 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07750.1

Sequence Viewer

Length: 612 bp
ATGGCGAAGGTTCATTCTCTAAATATTACACACCCTACTACATGTTCCAGTAACGAGTATATGACTTCAAAGAGGGAAACGTTCACTATATGGATGAAATCGCTTGTGATGCAAGGAAACGGGTGCACTGCCTTTGATGAAAATGGCGAAATCGTTTATCGTATAGATAACTACGACAACAAACACAGAAACGAAGTTTATCTCATGGATCTCCGTGGCAAACTTCTTTTTTCTCTATGTGAGAAGAAAATGAGCGTTTTTCCAAGTTGGAATGGCTATCAAAGCAATGATATTGGTGCCAAGAAGCCAATTTTTCAAGTGAGAAAAAGTTGTAGAATAAATCTTGGAAATAAAGATTGTTCTTATAAAGTAACCATGGGATCTGATAGCAATTGCTACAGGTTAGAGGGTTTGAATGGTAAATCACCATCATTAGCTTTCAGAATAAGAGACAACAATGGAGGAGTTGTGGCAGAGGCAAAGAGAAAGCAGTCAAGTTCAGGTGTAGTTTTTGGAGATGATGTGCTTACTTTGGTGGTGGAGCCTCATGTTGATCACTCCTTCATCATGGCTCTGGTCACTGTTTATGGCTTAATTAGACATCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

22.92

Weight (kDa)

8.99

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 27 - 196 5.3e-36 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 296
AclI AACGTT 1 cut(s) 80
AclWI GGATC 2 cut(s) 216, 388
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 3 cut(s) 69, 317, 415
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 444
Alw44I GTGCAC 1 cut(s) 124
AlwI GGATC 2 cut(s) 216, 388
ApaLI GTGCAC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 417
BaeGI GKGCMC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 128
BccI CCATC 1 cut(s) 436
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 397
BmiI GGNNCC 2 cut(s) 298, 543
BmsI GCATC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 214, 375
BsaXI ACNNNNNCTCC 4 cut(s) 453, 483, 507, 537
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 214, 375
BseGI GGATG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 477
BseSI GKGCMC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 208, 380, 553
Bsp19I CCATGG 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 298, 543
BspPI GGATC 2 cut(s) 216, 388
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 214, 375
BssMI GATC 3 cut(s) 208, 380, 553
BssT1I CCWWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 583
BstDSI CCRYGG 2 cut(s) 214, 375
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 3 cut(s) 211, 383, 556
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 208, 380, 553
BstMWI GCNNNNNNNGC 2 cut(s) 109, 282
BstNSI RCATGY 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 397
BstSLI GKGCMC 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 208, 380
BstYI RGATCY 2 cut(s) 208, 380
BtgI CCRYGG 2 cut(s) 214, 375
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 579
CviAII CATG 5 cut(s) 42, 205, 376, 548, 568
CviJI RGCY 6 cut(s) 276, 307, 437, 544, 572, 591
CviKI_1 RGCY 6 cut(s) 276, 307, 437, 544, 572, 591
DpnI GATC 3 cut(s) 210, 382, 555
DpnII GATC 3 cut(s) 208, 380, 553
Eco130I CCWWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 5 cut(s) 45, 208, 379, 551, 571
FatI CATG 5 cut(s) 41, 204, 375, 547, 567
FbaI TGATCA 1 cut(s) 553
FokI GGATG 1 cut(s) 106
Hin1II CATG 5 cut(s) 45, 208, 379, 551, 571
HphI GGTGA 1 cut(s) 417
Hpy166II GTNNAC 2 cut(s) 84, 126
Hpy188I TCNGA 2 cut(s) 385, 443
Hpy8I GTNNAC 2 cut(s) 84, 126
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 112, 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 282
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 5 cut(s) 45, 208, 379, 551, 571
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 208, 380, 553
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 4 cut(s) 61, 385, 486, 560
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 50, 370, 577
MalI GATC 3 cut(s) 210, 382, 555
MboI GATC 3 cut(s) 208, 380, 553
MboII GAAGA 1 cut(s) 256
MfeI CAATTG 1 cut(s) 391
MflI RGATCY 2 cut(s) 208, 380
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 3 cut(s) 309, 391, 594
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 5 cut(s) 66, 400, 455, 469, 555
MseI TTAA 1 cut(s) 593
MunI CAATTG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 109, 282
NcoI CCATGG 1 cut(s) 375
NdeII GATC 3 cut(s) 208, 380, 553
NlaIII CATG 5 cut(s) 45, 208, 379, 551, 571
NlaIV GGNNCC 2 cut(s) 298, 543
NmuCI GTSAC 1 cut(s) 577
NspI RCATGY 1 cut(s) 45
PciI ACATGT 1 cut(s) 41
PscI ACATGT 1 cut(s) 41
PsiI TTATAA 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 298, 543
PsuI RGATCY 2 cut(s) 208, 380
SaqAI TTAA 1 cut(s) 593
Sau3AI GATC 3 cut(s) 208, 380, 553
SduI GDGCHC 1 cut(s) 128
SetI ASST 5 cut(s) 12, 83, 404, 439, 505
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 397
Sse9I AATT 3 cut(s) 309, 391, 594
SspI AATATT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 1 cut(s) 83
TasI AATT 3 cut(s) 309, 391, 594
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 2 cut(s) 133, 586
TseFI GTSAC 1 cut(s) 577
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 3 cut(s) 110, 153, 553
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 133, 586
VneI GTGCAC 1 cut(s) 124
XceI RCATGY 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.