pycom06g07730

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000959
Physical Location & Seq
Forward (+)
12605663 .. 12606294
632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07730.1

Sequence Viewer

Length: 579 bp
ATGGCCAAGGTTCATCCTCTTTTAACATTCAACAGTACTGGTGATGCTTCTTCCAGCTCTACTAGTACTCCTAATAATAAGTATTTGACTTCAAAGAGAGAAACATTCACCATATGGATGAAATCTTTTGTAATTCAAGGAAGCGGATGCACTGCGTTTGATGAAAATGGCGAGATTGTTTATCGCGTCAATAACTACGACAGCAAACACAGCAGTGAAAAAATGTGTGGTTTTCCAAGTTGGAAGGGCTACAAAAGCAATGGTATCTGTGCCAGCAAGCCATTGTTTCGAATGAGAAAAAGTTATAGATCAATTCTTGGAAATAAAGAGTGTTCTTATAAAGTTACCATGAGATCTGATAGCAATTGCTACAGGTTAGAGGGTTTGAATGGTAAATCAACAGCTTTCAGAATTATGGATAGCAATAGAAGAGCTGTAGCAGAGGCAAAGAGAAAGCAGTCAAGTTCAGGAGTAGTATTGGGAGATGATGTATTCACATTGGCAGTGGAGCCTCATGTCGATCACTCCTTTGTCATGGCCCTTGTCACTGTTTATGGATGGATACGACGCCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

9.63

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 35 - 185 1.6e-25 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 2 cut(s) 37, 67
AgsI TTSAA 4 cut(s) 31, 93, 137, 388
AhlI ACTAGT 1 cut(s) 62
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 3 cut(s) 57, 404, 434
AluI AGCT 3 cut(s) 57, 404, 434
AoxI GGCC 2 cut(s) 3, 537
AspS9I GGNCC 1 cut(s) 538
AsuHPI GGTGA 2 cut(s) 53, 100
AsuII TTCGAA 1 cut(s) 289
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 552
BciVI GTATCC 1 cut(s) 555
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 2 cut(s) 370, 435
BfuI GTATCC 1 cut(s) 555
BglII AGATCT 1 cut(s) 353
BmcAI AGTACT 2 cut(s) 37, 67
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 510
BmsI GCATC 2 cut(s) 34, 137
Bpu14I TTCGAA 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 474, 504
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 4 cut(s) 13, 123, 152, 563
BseMI GCAATG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 5, 539
BsnI GGCC 2 cut(s) 5, 539
Bsp119I TTCGAA 1 cut(s) 289
Bsp143I GATC 3 cut(s) 308, 353, 520
BspACI CCGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 5, 539
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 424
BspT104I TTCGAA 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 308, 353, 520
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 35, 550
Bst6I CTCTTC 1 cut(s) 424
BstACI GRCGYC 1 cut(s) 568
BstBI TTCGAA 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 274, 278
BstF5I GGATG 4 cut(s) 13, 123, 152, 563
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 3 cut(s) 311, 356, 523
BstMBI GATC 3 cut(s) 308, 353, 520
BstMWI GCNNNNNNNGC 2 cut(s) 210, 255
BstSFI CTRYAG 2 cut(s) 370, 435
BstUI CGCG 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 2 cut(s) 5, 539
BtsCI GGATG 4 cut(s) 13, 123, 152, 563
BtsI GCAGTG 3 cut(s) 150, 220, 510
BtsIMutI CAGTG 4 cut(s) 150, 220, 510, 546
Cac8I GCNNGC 2 cut(s) 274, 278
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 1 cut(s) 175
Csp6I GTAC 2 cut(s) 36, 66
CviAII CATG 3 cut(s) 349, 515, 535
CviJI RGCY 8 cut(s) 5, 57, 249, 280, 404, 434, 511, 539
CviKI_1 RGCY 8 cut(s) 5, 57, 249, 280, 404, 434, 511, 539
CviQI GTAC 2 cut(s) 36, 66
DpnI GATC 3 cut(s) 310, 355, 522
DpnII GATC 3 cut(s) 308, 353, 520
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 3 cut(s) 352, 518, 538
FatI CATG 3 cut(s) 348, 514, 534
FauNDI CATATG 1 cut(s) 113
FokI GGATG 3 cut(s) 130, 159, 570
FspBI CTAG 1 cut(s) 63
HaeIII GGCC 2 cut(s) 5, 539
HgaI GACGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 3 cut(s) 352, 518, 538
HphI GGTGA 2 cut(s) 53, 100
Hpy188I TCNGA 2 cut(s) 358, 410
Hpy188III TCNNGA 1 cut(s) 468
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 35, 550
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 255
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 3 cut(s) 352, 518, 538
Kzo9I GATC 3 cut(s) 308, 353, 520
LguI GCTCTTC 1 cut(s) 424
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 5 cut(s) 24, 67, 286, 358, 453
LweI GCATC 2 cut(s) 34, 137
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 343, 544
MalI GATC 3 cut(s) 310, 355, 522
MboI GATC 3 cut(s) 308, 353, 520
MboII GAAGA 2 cut(s) 42, 441
MfeI CAATTG 1 cut(s) 364
MflI RGATCY 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 132, 312, 364, 411
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 4 cut(s) 27, 373, 436, 522
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 116, 213
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 364
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 210, 255
NdeI CATATG 1 cut(s) 113
NdeII GATC 3 cut(s) 308, 353, 520
NlaIII CATG 3 cut(s) 352, 518, 538
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 544
NspV TTCGAA 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 424
PsiI TTATAA 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 1 cut(s) 538
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 2 cut(s) 37, 67
RsaNI GTAC 2 cut(s) 36, 66
RseI CAYNNNNRTG 2 cut(s) 116, 213
SapI GCTCTTC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 3 cut(s) 308, 353, 520
Sau96I GGNCC 1 cut(s) 538
ScaI AGTACT 2 cut(s) 37, 67
SetI ASST 5 cut(s) 12, 59, 377, 406, 436
SfaNI GCATC 2 cut(s) 34, 137
SfcI CTRYAG 2 cut(s) 370, 435
SfuI TTCGAA 1 cut(s) 289
SmiMI CAYNNNNRTG 2 cut(s) 116, 213
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 4 cut(s) 132, 312, 364, 411
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 35, 550
TaqI TCGA 2 cut(s) 289, 519
TasI AATT 4 cut(s) 132, 312, 364, 411
TatI WGTACW 2 cut(s) 35, 65
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 4 cut(s) 157, 220, 510, 553
TseFI GTSAC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 2 cut(s) 134, 177
TspRI CASTG 4 cut(s) 157, 220, 510, 553
XspI CTAG 1 cut(s) 63
ZrmI AGTACT 2 cut(s) 37, 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.