pycom17g14650

LURP-one-related 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000959
Physical Location & Seq
Reverse (-)
12325454 .. 12326380
927 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g14650.1

Sequence Viewer

Length: 603 bp
ATGACAAAGGTTCACCCTGAGGCACCACTCTCCTCCTCGCTTGCCGAATACTGCACTTCGAAACAAGAAACATTCACCGTATGGATGAAGTCTCTCATACTGAATAGCAATGGCTGCACCGTCTTTGATTCTAATGGAAAAATTGTGTATCGCGTAGATAACTATGACTGCAAATGTAGAGGTGAAGTTTATCTTATGGATCTGAAAGGCAAAACCTTATTCACCATACGGAGAAAGAAATTCATTTTACCTGGGATTTGGGAGGGCTACAGATCCACAGGTAAAGAGATCAACCCAAAGAAGCCTGGATTTCAAGTAAGAAAAAGTTCTAGGTTGTGTAGAGGAAGGTCACTGTGTAAGGTTGTTGTAGGGCTAGACAAGAACCAACCACAACAATACAGAATAGAAAGCTTGAGCAGCAAGTCATCCTACAAGATACTTGAAAATTTTGGAAGACCAGTTGCAGAGGTAAAAAGGAAACAATCAACATGTGGAGTGGTTCTAGGAGAAGATGTTTTGACAGTGGTTGTAGAACCGCTCGTAGATCACAGTCTCATCGTAGGGCTTCTTGTTGTGTGCGGCCTCATCAACCGTAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

201

Amino Acids

22.54

Weight (kDa)

9.59

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 24 - 193 6e-36 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 538
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 536, 579
AclWI GGATC 2 cut(s) 207, 267
AcsI RAATTY 2 cut(s) 239, 445
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 2 cut(s) 314, 443
AjnI CCWGG 2 cut(s) 250, 304
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 96, 557
AlwI GGATC 2 cut(s) 207, 267
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 2 cut(s) 114, 417
ApoI RAATTY 2 cut(s) 239, 445
Asp700I GAANNNNTTC 1 cut(s) 325
AsuHPI GGTGA 4 cut(s) 5, 67, 194, 214
AsuII TTCGAA 1 cut(s) 59
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 101, 429
BciT130I CCWGG 2 cut(s) 252, 306
BcoDI GTCTC 2 cut(s) 96, 557
BfaI CTAG 3 cut(s) 330, 374, 503
BfmI CTRYAG 1 cut(s) 268
BisI GCNGC 3 cut(s) 115, 418, 580
BlsI GCNGC 3 cut(s) 116, 419, 581
Bme1390I CCNGG 2 cut(s) 252, 306
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 252, 306
BpiI GAAGAC 1 cut(s) 460
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bse1I ACTGG 1 cut(s) 458
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 252, 306
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 90, 425
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 2 cut(s) 22, 25
BseXI GCAGC 2 cut(s) 101, 429
BsgI GTGCAG 2 cut(s) 37, 100
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 582
BshNI GGYRCC 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 96, 557
BsnI GGCC 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 59
Bsp143I GATC 4 cut(s) 199, 272, 288, 544
BspACI CCGC 2 cut(s) 536, 579
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 207, 267
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 4 cut(s) 199, 272, 288, 544
Bst2UI CCWGG 2 cut(s) 252, 306
Bst4CI ACNGT 6 cut(s) 79, 121, 354, 523, 551, 593
BstAPI GCANNNNNTGC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 90, 425
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 4 cut(s) 202, 275, 291, 547
BstMAI GTCTC 2 cut(s) 96, 557
BstMBI GATC 4 cut(s) 199, 272, 288, 544
BstMWI GCNNNNNNNGC 2 cut(s) 114, 417
BstNI CCWGG 2 cut(s) 252, 306
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 250, 304
BstSFI CTRYAG 1 cut(s) 268
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 101, 429
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 2 cut(s) 199, 272
BstYI RGATCY 2 cut(s) 199, 272
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 2 cut(s) 90, 425
BtsIMutI CAGTG 2 cut(s) 350, 528
Cac8I GCNNGC 1 cut(s) 42
CviAII CATG 1 cut(s) 489
CviJI RGCY 7 cut(s) 114, 267, 304, 373, 411, 565, 582
CviKI_1 RGCY 7 cut(s) 114, 267, 304, 373, 411, 565, 582
DdeI CTNAG 1 cut(s) 18
DpnI GATC 4 cut(s) 201, 274, 290, 546
DpnII GATC 4 cut(s) 199, 272, 288, 544
Eco81I CCTNAGG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 250, 304
FaeI CATG 1 cut(s) 492
FaiI YATR 6 cut(s) 82, 98, 165, 197, 227, 490
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 1 cut(s) 488
Fnu4HI GCNGC 3 cut(s) 115, 418, 580
FokI GGATG 2 cut(s) 97, 412
Fsp4HI GCNGC 3 cut(s) 115, 418, 580
FspBI CTAG 3 cut(s) 330, 374, 503
GluI GCNGC 3 cut(s) 115, 418, 580
HaeIII GGCC 1 cut(s) 582
Hin1II CATG 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 1 cut(s) 128
HphI GGTGA 4 cut(s) 5, 67, 194, 214
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 6 cut(s) 79, 121, 354, 523, 551, 593
HpyCH4V TGCA 4 cut(s) 54, 117, 171, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 417
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 492
Kzo9I GATC 4 cut(s) 199, 272, 288, 544
LpnPI CCDG 7 cut(s) 30, 237, 264, 264, 291, 318, 471
Lsp1109I GCAGC 2 cut(s) 101, 429
MaeI CTAG 3 cut(s) 330, 374, 503
MaeIII GTNAC 1 cut(s) 348
MalI GATC 4 cut(s) 201, 274, 290, 546
MbiI CCGCTC 1 cut(s) 538
MboI GATC 4 cut(s) 199, 272, 288, 544
MboII GAAGA 2 cut(s) 465, 521
MflI RGATCY 2 cut(s) 199, 272
MluCI AATT 3 cut(s) 141, 239, 445
MnlI CCTC 8 cut(s) 13, 43, 46, 173, 256, 335, 460, 593
MroXI GAANNNNTTC 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 252, 306
MvaI CCWGG 2 cut(s) 252, 306
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 114, 417
NdeII GATC 4 cut(s) 199, 272, 288, 544
NlaIII CATG 1 cut(s) 492
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 348
NspI RCATGY 1 cut(s) 492
NspV TTCGAA 1 cut(s) 59
PciI ACATGT 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 3 cut(s) 116, 419, 581
PscI ACATGT 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 250, 304
PspGI CCWGG 2 cut(s) 250, 304
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 199, 272
SatI GCNGC 3 cut(s) 115, 418, 580
Sau3AI GATC 4 cut(s) 199, 272, 288, 544
ScrFI CCNGG 2 cut(s) 252, 306
SfcI CTRYAG 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 3 cut(s) 141, 239, 445
SsiI CCGC 2 cut(s) 536, 579
SspMI CTAG 3 cut(s) 330, 374, 503
StyD4I CCNGG 2 cut(s) 250, 304
TaaI ACNGT 6 cut(s) 79, 121, 354, 523, 551, 593
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 141, 239, 445
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 2 cut(s) 357, 528
TseFI GTSAC 1 cut(s) 348
TseI GCWGC 2 cut(s) 114, 417
Tsp45I GTSAC 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 101, 232
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 2 cut(s) 357, 528
XapI RAATTY 2 cut(s) 239, 445
XceI RCATGY 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 3 cut(s) 330, 374, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.