Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015720

Physical Location & Seq

Genomic Coordinates Forward (+)

3757381 .. 3759874

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATTGTTGGTATTTTGTTCCTGGCCACCAGTTCACATGGTAGGTTTGATCTGCATAGACTTGTTTTTTCTGCTTTCTTGAAGAGCAGAACCATCGGAGCTGCCAAAGTTGCTGCAGAGGATTCTTACTATGCCGTCAAAAGGGGGAGCGTTTCAAGTCAGGACTTTGAGTACACTTTGAAGAGCATGTGTAAAGAAGGTGCATGTTATGTTACTGATGGACGCTATCTGGGAGCTACATTGGATATGAATAGACTCCGACCGGGTGGCTTTAACGTCACCCACAGTGGACGAGTTGTTATGGCCAGTGAAGTTGGGGTTGTAGACGTACCTCCAGAAGATGTCTGCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

119

Amino Acids

12.88

Weight (kDa)

8.86

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	69 - 118	5.9e-14	Glutamine amidotransferases class-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015720)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g26310
rosa_chinensis	RchiOBHm_Chr1g0320251
rosa_laevigata	RLG00000022558 RLG00000035271
rosa_multiflora	Rmu_sc0001104.1_g000011 Rmu_sc0003833.1_g000001 Rmu_sc0006031.1_g000007 Rmu_sc0007663.1_g000008
rosa_roxburghii	Rroxscaffold_1G00030370 Rroxscaffold_5G00367100
rosa_samantha	Rh1BG166400 Rh1BG317900 Rh2BG294000 Rh4BG156000 Rh4CG143100 Rh6AG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	24, 303
AfaI	GTAC	2 cut(s)	173, 330
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	82, 156, 181
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	2 cut(s)	101, 236
AluI	AGCT	2 cut(s)	101, 236
AoxI	GGCC	2 cut(s)	24, 303
ApeKI	GCWGC	2 cut(s)	101, 113
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	271
BalI	TGGCCA	2 cut(s)	26, 305
BbvI	GCAGC	2 cut(s)	88, 100
BccI	CCATC	2 cut(s)	101, 212
BceAI	ACGGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	114, 346
BisI	GCNGC	2 cut(s)	102, 114
BlsI	GCNGC	2 cut(s)	103, 115
Bme1390I	CCNGG	2 cut(s)	23, 264
BmrFI	CCNGG	2 cut(s)	23, 264
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	30, 306
BseBI	CCWGG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	30, 306
BseXI	GCAGC	2 cut(s)	88, 100
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	26, 305
BsiEI	CGRYCG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	141
BsnI	GGCC	2 cut(s)	26, 305
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	26, 305
BspMAI	CTGCAG	2 cut(s)	118, 350
BspQI	GCTCTTC	2 cut(s)	77, 176
BsrI	ACTGG	2 cut(s)	30, 306
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	2 cut(s)	77, 176
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	2 cut(s)	190, 207
BstSCI	CCNGG	2 cut(s)	21, 262
BstSFI	CTRYAG	2 cut(s)	114, 346
BstV1I	GCAGC	2 cut(s)	88, 100
BsuRI	GGCC	2 cut(s)	26, 305
BtsIMutI	CAGTG	2 cut(s)	292, 313
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	172, 329
CviAII	CATG	3 cut(s)	38, 187, 204
CviJI	RGCY	5 cut(s)	26, 101, 236, 270, 305
CviKI_1	RGCY	5 cut(s)	26, 101, 236, 270, 305
CviQI	GTAC	2 cut(s)	172, 329
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	2 cut(s)	24, 303
Eam1104I	CTCTTC	2 cut(s)	77, 176
EarI	CTCTTC	2 cut(s)	77, 176
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	3 cut(s)	41, 190, 207
FaiI	YATR	8 cut(s)	39, 57, 132, 188, 205, 210, 248, 302
FatI	CATG	3 cut(s)	37, 186, 203
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	102, 114
Fsp4HI	GCNGC	2 cut(s)	102, 114
GluI	GCNGC	2 cut(s)	102, 114
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	26, 305
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	41, 190, 207
HinfI	GANTC	2 cut(s)	122, 255
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	4 cut(s)	35, 174, 290, 325
Hpy188I	TCNGA	2 cut(s)	98, 260
Hpy188III	TCNNGA	3 cut(s)	79, 161, 335
Hpy8I	GTNNAC	4 cut(s)	35, 174, 290, 325
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	276, 327
HpyCH4V	TGCA	4 cut(s)	55, 116, 203, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpySE526I	ACGT	2 cut(s)	276, 327
Hsp92II	CATG	3 cut(s)	41, 190, 207
Kzo9I	GATC	1 cut(s)	49
LguI	GCTCTTC	2 cut(s)	77, 176
LmnI	GCTCC	3 cut(s)	98, 147, 233
LpnPI	CCDG	9 cut(s)	8, 35, 43, 146, 215, 276, 319, 334, 348
Lsp1109I	GCAGC	2 cut(s)	88, 100
MaeII	ACGT	2 cut(s)	276, 327
MaeIII	GTNAC	2 cut(s)	211, 277
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	94, 193, 350
MlsI	TGGCCA	2 cut(s)	26, 305
MluNI	TGGCCA	2 cut(s)	26, 305
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	2 cut(s)	112, 342
Mox20I	TGGCCA	2 cut(s)	26, 305
MscI	TGGCCA	2 cut(s)	26, 305
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	2 cut(s)	26, 305
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	23, 264
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	41, 190, 207
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	2 cut(s)	190, 207
PciSI	GCTCTTC	2 cut(s)	77, 176
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	103, 115
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PstI	CTGCAG	2 cut(s)	118, 350
RsaI	GTAC	2 cut(s)	173, 330
RsaNI	GTAC	2 cut(s)	172, 329
SapI	GCTCTTC	2 cut(s)	77, 176
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	102, 114
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	23, 264
SetI	ASST	7 cut(s)	47, 103, 202, 238, 279, 330, 334
SfcI	CTRYAG	2 cut(s)	114, 346
StyD4I	CCNGG	2 cut(s)	21, 262
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	279, 330
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	292, 313
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	101, 113
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	292, 313
XceI	RCATGY	2 cut(s)	190, 207
XmiI	GTMKAC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.