Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003833.1

Orthogroup ID

OG0015720

Physical Location & Seq

Genomic Coordinates Reverse (-)

3146 .. 3511

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003833.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgaatagactccaaccgagtggctttaacgtcacccacagtggacgagttattatggccagtgaagttggggttgtagacgtacctctagaagatgactgcaggaaaggaagacttaaccctggaatggtgcttttggtggattttgagaatcatatagtggtagatgatgaagccttgaagcagcaatattcactgccaaggccttatggagagtggcttacaaggcagaagatgctcaaggacatagttgattctgttcatgtatttgacagggtccctccatccatagctggagttgttcctgtaagagtaaggctagattttgctgaccattttgtagtcgatgtagtgatatcaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

121

Amino Acids

13.56

Weight (kDa)

5.45

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015720)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g26310
rosa_chinensis	RchiOBHm_Chr1g0320251
rosa_laevigata	RLG00000022558 RLG00000035271
rosa_multiflora	Rmu_sc0001104.1_g000011 Rmu_sc0003833.1_g000001 Rmu_sc0006031.1_g000007 Rmu_sc0007663.1_g000008
rosa_roxburghii	Rroxscaffold_1G00030370 Rroxscaffold_5G00367100
rosa_samantha	Rh1BG166400 Rh1BG317900 Rh2BG294000 Rh4BG156000 Rh4CG143100 Rh6AG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	57
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AoxI	GGCC	2 cut(s)	57, 203
ApeKI	GCWGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	2 cut(s)	89, 320
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	278, 279
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	121, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	121, 200
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	2 cut(s)	59, 205
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	59, 205
BspANI	GGCC	2 cut(s)	59, 205
BspLI	GGNNCC	2 cut(s)	278, 279
BspMAI	CTGCAG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	121, 200
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 235
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	59, 205
BtsCI	GGATG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	3 cut(s)	46, 67, 194
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	7 cut(s)	24, 59, 176, 205, 220, 293, 319
CviKI_1	RGCY	7 cut(s)	24, 59, 176, 205, 220, 293, 319
CviQI	GTAC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	266
FaiI	YATR	7 cut(s)	56, 156, 158, 210, 248, 264, 290
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	89, 320
GluI	GCNGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	59, 205
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	3 cut(s)	9, 151, 254
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	44, 79
Hpy188III	TCNNGA	2 cut(s)	89, 360
Hpy8I	GTNNAC	2 cut(s)	44, 79
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	2 cut(s)	30, 81
HpyCH4V	TGCA	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 235
HpySE526I	ACGT	2 cut(s)	30, 81
Hsp92II	CATG	1 cut(s)	266
KflI	GGGWCCC	1 cut(s)	277
LpnPI	CCDG	8 cut(s)	73, 88, 108, 135, 259, 279, 318, 345
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	89, 320
MaeII	ACGT	2 cut(s)	30, 81
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	3 cut(s)	104, 123, 244
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	96, 291
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	27, 117
Msp20I	TGGCCA	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	226, 235
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	278, 279
NmuCI	GTSAC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	151, 254
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	278, 279
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	27, 117
SatI	GCNGC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	33, 84, 88, 295
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SseBI	AGGCCT	1 cut(s)	205
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	2 cut(s)	89, 320
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	2 cut(s)	33, 84
TaqI	TCGA	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	151, 254
Tru1I	TTAA	2 cut(s)	27, 117
Tru9I	TTAA	2 cut(s)	27, 117
TscAI	CASTG	3 cut(s)	46, 67, 201
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	17, 186, 251
TspRI	CASTG	3 cut(s)	46, 67, 201
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	277
XbaI	TCTAGA	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	89, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.