Rroxscaffold_1G00030370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015720
Physical Location & Seq
Forward (+)
39941790 .. 39966511
24722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030370.1

Sequence Viewer

Length: 435 bp
ATGCCCCAAAAGAGACCGGATGCGCCACTAAAAGCAGTTGCACATGAGCTGCATGCTCCGCCGGACCGACACCAAAATCTGGAGGATCAGTTCCTACCAACCCACATCATGCCATTTAAGTCGGTGAGAAAAACACGCGATGTAAAACAATATAATGTTATCTCCCTGAGAAAACAAGCTGAATTTAAGTGCAAACATTATGATATAATCGTTGAAGAAAAGTTACTCTGTGCTGGAAGATTAATTGATTCAAACAAGAAGCTTTATGTAATCACATCGCTGGTACTTTTTCTAAACTACAATATGTTGGCAGGAGGGCTTCTTGTTGAGGAAGTGCTTGAACAAGAGGGTGTCAAATCTGAGGAGGTGCAAAAGCGTTTGCTACATTTTGGTTTTGACAAACTTCAAGATAAATCCAAGTTTTCAGAACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.78

Weight (kDa)

9.04

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 59
AclI AACGTT 1 cut(s) 430
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 4 cut(s) 215, 252, 341, 407
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 3 cut(s) 49, 179, 262
AluI AGCT 3 cut(s) 49, 179, 262
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 182
AseI ATTAAT 1 cut(s) 242
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 64
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BbvI GCAGC 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 7
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 158, 351
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 138
BsiSI CCGG 2 cut(s) 17, 62
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 7
Bso31I GGTCTC 1 cut(s) 7
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 159, 352
BspFNI CGCG 1 cut(s) 138
BspPI GGATC 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 7
BssMI GATC 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 167, 360
BstF5I GGATG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 56
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 36
BtgZI GCGATG 2 cut(s) 153, 261
BtsCI GGATG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 64
CpoI CGGWCCG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 284
CspI CGGWCCG 1 cut(s) 64
CviAII CATG 3 cut(s) 44, 53, 109
CviJI RGCY 4 cut(s) 49, 179, 262, 319
CviKI_1 RGCY 4 cut(s) 49, 179, 262, 319
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 2 cut(s) 167, 360
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 64
FaeI CATG 3 cut(s) 47, 56, 112
FaiI YATR 8 cut(s) 45, 54, 110, 153, 201, 206, 267, 305
FatI CATG 3 cut(s) 43, 52, 108
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 50
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 101
HapII CCGG 2 cut(s) 17, 62
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 47, 56, 112
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 1 cut(s) 248
HpaII CCGG 2 cut(s) 17, 62
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 361, 427
Hpy188III TCNNGA 2 cut(s) 80, 407
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 4 cut(s) 41, 52, 192, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 2 cut(s) 167, 360
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 3 cut(s) 47, 56, 112
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 7 cut(s) 30, 65, 75, 179, 219, 266, 297
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 10
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 227, 249
MluCI AATT 2 cut(s) 182, 243
MnlI CCTC 6 cut(s) 76, 308, 322, 340, 355, 358
MseI TTAA 4 cut(s) 117, 186, 242, 433
MspI CCGG 2 cut(s) 17, 62
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 1 cut(s) 85
NlaIII CATG 3 cut(s) 47, 56, 112
NspI RCATGY 1 cut(s) 56
PaeI GCATGC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 242
Psp1406I AACGTT 1 cut(s) 430
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
Rsr2I CGGWCCG 1 cut(s) 64
RsrII CGGWCCG 1 cut(s) 64
SaqAI TTAA 4 cut(s) 117, 186, 242, 433
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 64
SetI ASST 5 cut(s) 51, 181, 264, 369, 433
SfaNI GCATC 1 cut(s) 10
SinI GGWCC 1 cut(s) 64
SphI GCATGC 1 cut(s) 56
Sse9I AATT 2 cut(s) 182, 243
SsiI CCGC 1 cut(s) 59
TaiI ACGT 1 cut(s) 433
TaqII GACCGA 1 cut(s) 81
TasI AATT 2 cut(s) 182, 243
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 4 cut(s) 117, 186, 242, 433
Tru9I TTAA 4 cut(s) 117, 186, 242, 433
TseI GCWGC 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 64
VspI ATTAAT 1 cut(s) 242
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.