Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015720

Physical Location & Seq

Genomic Coordinates Reverse (-)

63942345 .. 63943904

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTTGACAAGGCAGTGAACAAGTTTCTTATAAGGGAGTTCAGAGCAGACACCGATATTGAAGTGGTGGGGAAGCTAGAGAGGAACTTTACTGATGGACGCTATCTGGGAGGTACATTGGATATGAATAGACTACGACCGGGTGGCTTTAACATCACCCACAGTGGACGAGTTATTATGGCCACTGAAGTTGGGGTTGTAGACATACCTCTAGAAGATATCTGCAGGAAAGGAAGACTTAACCCTGGAATGATGCTTTTGGTGGATTTTGAGAATCATATAGTGGTAGATGATGAAGCCTTGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

5.31

Isoelectric Point (pI)

20.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	29 - 103	1.1e-23	Glutamine amidotransferases class-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015720)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g26310
rosa_chinensis	RchiOBHm_Chr1g0320251
rosa_laevigata	RLG00000022558 RLG00000035271
rosa_multiflora	Rmu_sc0001104.1_g000011 Rmu_sc0003833.1_g000001 Rmu_sc0006031.1_g000007 Rmu_sc0007663.1_g000008
rosa_roxburghii	Rroxscaffold_1G00030370 Rroxscaffold_5G00367100
rosa_samantha	Rh1BG166400 Rh1BG317900 Rh2BG294000 Rh4BG156000 Rh4CG143100 Rh6AG144200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	62, 304
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	241
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	2 cut(s)	77, 212
BfmI	CTRYAG	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	141, 246
BmrFI	CCNGG	2 cut(s)	141, 246
BmsI	GCATC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	244
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	140
BsnI	GGCC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	164
BstMCI	CGRYCG	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	139, 244
BstSFI	CTRYAG	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 169, 183
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	114
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviJI	RGCY	4 cut(s)	76, 147, 182, 299
CviKI_1	RGCY	4 cut(s)	76, 147, 182, 299
CviQI	GTAC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	220
FaiI	YATR	6 cut(s)	32, 125, 179, 206, 279, 281
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FblI	GTMKAC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	77, 212
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	4 cut(s)	7, 19, 167, 202
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	4 cut(s)	7, 19, 167, 202
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	225
LpnPI	CCDG	5 cut(s)	92, 153, 211, 231, 258
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	77, 212
MboII	GAAGA	2 cut(s)	227, 246
MlsI	TGGCCA	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	182
MnlI	CCTC	3 cut(s)	75, 104, 219
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	2 cut(s)	150, 240
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	141, 246
MvaI	CCWGG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	150, 240
ScrFI	CCNGG	2 cut(s)	141, 246
SetI	ASST	3 cut(s)	78, 115, 211
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	223
SspMI	CTAG	2 cut(s)	77, 212
StyD4I	CCNGG	2 cut(s)	139, 244
TaaI	ACNGT	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	150, 240
Tru9I	TTAA	2 cut(s)	150, 240
TscAI	CASTG	3 cut(s)	21, 169, 190
TspDTI	ATGAA	2 cut(s)	140, 309
TspRI	CASTG	3 cut(s)	21, 169, 190
XbaI	TCTAGA	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	77, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.