Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015720

Physical Location & Seq

Genomic Coordinates Forward (+)

28656239 .. 28673708

Gene Structure 17470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG143100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTGGCAGGAGGGCATCTTGTTGAGGAAGTGCTTGAACAAGAGGGTGTCAAATCTGAGGAGGTGCAAAAGCGTTTGCTGCATTTTGGTTTTGACAAACTTCAAGATAAATCCAAGTTTTCAGATGTGTTTGGAGTGGTAGGGACTTTTCTTGGAGTTGTTCTCTTTCAGTTTGCGACTTGTCTTCTGTATGGGTTATTTGGCTGGAAAGAAATGTTGATTGCAGGGAGGTTGCAGGGAGAGACAGTGGCAGCAGCTAGGAGACGATCTGAGACTACTCCTAAGCTGGACAAGCACAATAACCAGAAGATTGAGCTCAAGGACATAGTTCATTCTGTTCATGTATCTGACAGGGTCCCTCCATCCATAGCTGGAGTTGTTCCTGCATCTACTGATGATGACAACATGGAAAACATGGGATTCCATGGTTTACTAATTTTGGATAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

150

Amino Acids

16.61

Weight (kDa)

5.64

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015720)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g26310
rosa_chinensis	RchiOBHm_Chr1g0320251
rosa_laevigata	RLG00000022558 RLG00000035271
rosa_multiflora	Rmu_sc0001104.1_g000011 Rmu_sc0003833.1_g000001 Rmu_sc0006031.1_g000007 Rmu_sc0007663.1_g000008
rosa_roxburghii	Rroxscaffold_1G00030370 Rroxscaffold_5G00367100
rosa_samantha	Rh1BG166400 Rh1BG317900 Rh2BG294000 Rh4BG156000 Rh4CG143100 Rh6AG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	38, 104
AluBI	AGCT	4 cut(s)	257, 286, 316, 371
AluI	AGCT	4 cut(s)	257, 286, 316, 371
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	3 cut(s)	236, 256, 266
ApeKI	GCWGC	3 cut(s)	79, 251, 254
AspS9I	GGNCC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	66, 263, 266
BccI	CCATC	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	236, 256, 266
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	80, 252, 255
BlsI	GCNGC	3 cut(s)	81, 253, 256
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	356, 357
BmsI	GCATC	2 cut(s)	25, 395
BpiI	GAAGAC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	48, 261
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	66, 263, 266
BsiHKAI	GWGCWC	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	157, 341
BsmAI	GTCTC	3 cut(s)	236, 256, 266
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	157, 341
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	266
Bsp19I	CCATGG	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	49, 262
BspLI	GGNNCC	2 cut(s)	356, 357
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	57, 270, 282
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	362
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	3 cut(s)	236, 256, 266
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 292
BstV1I	GCAGC	3 cut(s)	66, 263, 266
BstV2I	GAAGAC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	355
CviAII	CATG	4 cut(s)	341, 406, 415, 425
CviJI	RGCY	5 cut(s)	204, 257, 286, 316, 371
CviKI_1	RGCY	5 cut(s)	204, 257, 286, 316, 371
DdeI	CTNAG	3 cut(s)	57, 270, 282
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	4 cut(s)	344, 409, 418, 428
FaiI	YATR	7 cut(s)	192, 326, 342, 368, 407, 416, 426
FaqI	GGGAC	2 cut(s)	157, 341
FatI	CATG	4 cut(s)	340, 405, 414, 424
Fnu4HI	GCNGC	3 cut(s)	80, 252, 255
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	80, 252, 255
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	80, 252, 255
GsuI	CTGGAG	1 cut(s)	393
Hin1II	CATG	4 cut(s)	344, 409, 418, 428
HinfI	GANTC	1 cut(s)	420
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	58, 124, 271, 349
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	5 cut(s)	67, 82, 224, 235, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 292
HpyF3I	CTNAG	3 cut(s)	57, 270, 282
Hsp92II	CATG	4 cut(s)	344, 409, 418, 428
KflI	GGGWCCC	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	266
LpnPI	CCDG	8 cut(s)	190, 210, 221, 272, 317, 337, 357, 396
Lsp1109I	GCAGC	3 cut(s)	66, 263, 266
LweI	GCATC	2 cut(s)	25, 395
MaeI	CTAG	1 cut(s)	258
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	176, 319
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	435, 448
MnlI	CCTC	7 cut(s)	5, 19, 37, 52, 55, 222, 369
MseI	TTAA	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	79, 292
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	4 cut(s)	344, 409, 418, 428
NlaIV	GGNNCC	2 cut(s)	356, 357
PfeI	GAWTC	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	81, 253, 256
PpuMI	RGGWCCY	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	356, 357
PspPI	GGNCC	1 cut(s)	355
PspPPI	RGGWCCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	3 cut(s)	80, 252, 255
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	66, 233, 259, 288, 318, 373
SfaNI	GCATC	2 cut(s)	25, 395
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	435, 448
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	2 cut(s)	435, 448
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	3 cut(s)	79, 251, 254
TspDTI	ATGAA	2 cut(s)	320, 329
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	355
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.