Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015720

Physical Location & Seq

Genomic Coordinates Reverse (-)

28112589 .. 28120849

Gene Structure 8261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG156000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTTGGAAATTGCCAGCAGGTAGCACAGCTGCTTGAAAATGAGGAGCTTGTCGAAGTGGGTTCGAGGATAAATCAAGCATGTGGGGACTGGTTTTGGGGGAGTACATGTGATGGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACCGGATACATTTTTTCTTCCCAATGAGTTAAACTTGAAAAACTCTTCTTCTCTAAGCAATTCCAGTTATGATGAGCTTCCTCAAGGCACTCCTTTATGTCTACAGTGCCATCGCACAAGAGAACATAAAGCAGTTACTGATGGACGCTATCTGGGAGCTACATTGGATATGAATAGACTCCGACCGGGTGGCTTTAACGTCACCCACAGTGGACGAGTTATTATGGCCAGTGAAGTTGGGGTTGTAGACGTACCTCCAGAAGATGTCTGCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

142

Amino Acids

15.69

Weight (kDa)

5.44

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	94 - 142	1.9e-13	Glutamine amidotransferases class-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015720)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g26310
rosa_chinensis	RchiOBHm_Chr1g0320251
rosa_laevigata	RLG00000022558 RLG00000035271
rosa_multiflora	Rmu_sc0001104.1_g000011 Rmu_sc0003833.1_g000001 Rmu_sc0006031.1_g000007 Rmu_sc0007663.1_g000008
rosa_roxburghii	Rroxscaffold_1G00030370 Rroxscaffold_5G00367100
rosa_samantha	Rh1BG166400 Rh1BG317900 Rh2BG294000 Rh4BG156000 Rh4CG143100 Rh6AG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
AccI	GTMKAC	2 cut(s)	250, 396
AcoI	YGGCCR	1 cut(s)	375
AfaI	GTAC	2 cut(s)	106, 402
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	38, 187
AluBI	AGCT	4 cut(s)	31, 49, 226, 308
AluI	AGCT	4 cut(s)	31, 49, 226, 308
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	128, 375
ApeKI	GCWGC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	3 cut(s)	107, 267, 284
BciVI	GTATCC	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	2 cut(s)	251, 418
BfuAI	ACCTGC	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	3 cut(s)	95, 213, 378
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseNI	ACTGG	3 cut(s)	95, 213, 378
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	18
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	130, 377
BsiEI	CGRYCG	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	152, 335
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	130, 377
BspANI	GGCC	2 cut(s)	130, 377
BspMAI	CTGCAG	1 cut(s)	422
BspMI	ACCTGC	1 cut(s)	10
BsrI	ACTGG	3 cut(s)	95, 213, 378
Bst4CI	ACNGT	2 cut(s)	255, 359
Bst6I	CTCTTC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	203
BstMAI	GTCTC	1 cut(s)	143
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNSI	RCATGY	2 cut(s)	84, 111
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	2 cut(s)	251, 418
BstV1I	GCAGC	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	130, 377
BtgZI	GCGATG	1 cut(s)	245
BtsIMutI	CAGTG	3 cut(s)	260, 364, 385
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	17
CaiI	CAGNNNCTG	1 cut(s)	287
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	105, 401
CviAII	CATG	2 cut(s)	81, 108
CviJI	RGCY	7 cut(s)	31, 49, 130, 226, 308, 342, 377
CviKI_1	RGCY	7 cut(s)	31, 49, 130, 226, 308, 342, 377
CviQI	GTAC	2 cut(s)	105, 401
DdeI	CTNAG	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	130
FaeI	CATG	2 cut(s)	84, 111
FaiI	YATR	8 cut(s)	82, 109, 123, 219, 247, 276, 320, 374
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	80, 107
FblI	GTMKAC	2 cut(s)	250, 396
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	130, 377
HapII	CCGG	2 cut(s)	152, 335
HgaI	GACGC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	84, 111
HinfI	GANTC	2 cut(s)	136, 327
HpaII	CCGG	2 cut(s)	152, 335
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	251, 362, 397
Hpy188I	TCNGA	1 cut(s)	332
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	3 cut(s)	251, 362, 397
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	2 cut(s)	255, 359
HpyCH4IV	ACGT	2 cut(s)	348, 399
HpyCH4V	TGCA	2 cut(s)	121, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	348, 399
Hsp92II	CATG	2 cut(s)	84, 111
LmnI	GCTCC	2 cut(s)	46, 305
Lsp1109I	GCAGC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	348, 399
MaeIII	GTNAC	2 cut(s)	283, 349
MboII	GAAGA	4 cut(s)	158, 186, 189, 422
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	2 cut(s)	10, 208
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	145, 321
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	4 cut(s)	37, 60, 240, 414
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	179, 345
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	2 cut(s)	152, 335
MspR9I	CCNGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	336
NlaIII	CATG	2 cut(s)	84, 111
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	2 cut(s)	84, 111
PceI	AGGCCT	1 cut(s)	130
PciI	ACATGT	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	2 cut(s)	144, 321
PpsI	GAGTC	2 cut(s)	144, 321
PscI	ACATGT	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	106, 402
RsaNI	GTAC	2 cut(s)	105, 401
SaqAI	TTAA	2 cut(s)	179, 345
SatI	GCNGC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	145, 321
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	24, 33, 51, 228, 310, 351, 402, 406
SfcI	CTRYAG	2 cut(s)	251, 418
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	10, 208
SseBI	AGGCCT	1 cut(s)	130
SspMI	CTAG	1 cut(s)	126
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	255, 359
TaiI	ACGT	2 cut(s)	351, 402
TaqI	TCGA	3 cut(s)	54, 65, 134
TasI	AATT	2 cut(s)	10, 208
TatI	WGTACW	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	179, 345
Tru9I	TTAA	2 cut(s)	179, 345
TscAI	CASTG	3 cut(s)	260, 364, 385
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	335
TspRI	CASTG	3 cut(s)	260, 364, 385
XceI	RCATGY	2 cut(s)	84, 111
XmiI	GTMKAC	2 cut(s)	250, 396
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.