Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015720

Physical Location & Seq

Genomic Coordinates Forward (+)

22425927 .. 22431943

Gene Structure 6017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG144200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTCTTAGACTCCTTTCTTCCTGTGCAGGTGTAAAATTTCTCCTTAAAAGGAGTTCTGGAGGTCTATGGGAAGTTGCTGCACTAAATTGTTTACCTCTGAGCCTTGATGCTCGATGGGATAAATTGTTAATCTCTACATTACAGATTAGCTTGGAGAGAGCTTGGACAACAACTTCAACTTGTTATTTGTTGACTGCAGGGAGGTTGCAGGGAGAGACAGTGGCAGCAGCTAGGAGAAGATCTGAGACTACTCCTGAGCTGGACAAGCACAATAACCAGCTAGGTTGGGTTCTGTTATGTTGTTCAAGTGCTTTTAGGCCTTATGGAGAGTGGCTTAAAAGGCAGAAGATTGAGCTCAAGGACATAGTTCATTCTGTTCATGTATCTGACAGGGTCCCTCCATCCATAGTTGGAGTTGTTCATGCATCTACTGATGATGACAACATGGAAAACATGGGATTCCATGGCACTGAGATACAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

7.69

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015720)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g26310
rosa_chinensis	RchiOBHm_Chr1g0320251
rosa_laevigata	RLG00000022558 RLG00000035271
rosa_multiflora	Rmu_sc0001104.1_g000011 Rmu_sc0003833.1_g000001 Rmu_sc0006031.1_g000007 Rmu_sc0007663.1_g000008
rosa_roxburghii	Rroxscaffold_1G00030370 Rroxscaffold_5G00367100
rosa_samantha	Rh1BG166400 Rh1BG317900 Rh2BG294000 Rh4BG156000 Rh4CG143100 Rh6AG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	180, 309
AluBI	AGCT	6 cut(s)	153, 164, 233, 262, 283, 358
AluI	AGCT	6 cut(s)	153, 164, 233, 262, 283, 358
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	212, 242
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	3 cut(s)	80, 227, 230
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	67, 239, 242
BccI	CCATC	2 cut(s)	111, 412
BcoDI	GTCTC	2 cut(s)	212, 242
BfaI	CTAG	2 cut(s)	234, 284
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	20
BglII	AGATCT	2 cut(s)	242, 483
BisI	GCNGC	3 cut(s)	81, 228, 231
BlsI	GCNGC	3 cut(s)	82, 229, 232
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	398, 399
BmsI	GCATC	2 cut(s)	100, 437
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bse8I	GATNNNNATC	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	1 cut(s)	404
BseJI	GATNNNNATC	1 cut(s)	482
BseMII	CTCAG	4 cut(s)	92, 237, 249, 465
BseXI	GCAGC	3 cut(s)	67, 239, 242
BsgI	GTGCAG	2 cut(s)	48, 66
BshFI	GGCC	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	212, 242
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	242, 483
Bsp19I	CCATGG	1 cut(s)	466
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	4 cut(s)	93, 238, 250, 466
BspLI	GGNNCC	2 cut(s)	398, 399
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	242, 483
BssT1I	CCWWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	223
BstDEI	CTNAG	5 cut(s)	8, 101, 246, 258, 474
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	245, 486
BstMAI	GTCTC	2 cut(s)	212, 242
BstMBI	GATC	2 cut(s)	242, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 343
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	67, 239, 242
BstX2I	RGATCY	2 cut(s)	242, 483
BstYI	RGATCY	2 cut(s)	242, 483
BsuRI	GGCC	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	228, 471
BveI	ACCTGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	397
CviAII	CATG	5 cut(s)	383, 425, 448, 457, 467
DdeI	CTNAG	5 cut(s)	8, 101, 246, 258, 474
DpnI	GATC	2 cut(s)	244, 485
DpnII	GATC	2 cut(s)	242, 483
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	466
Eco147I	AGGCCT	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	466
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	5 cut(s)	386, 428, 451, 460, 470
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	5 cut(s)	382, 424, 447, 456, 466
Fnu4HI	GCNGC	3 cut(s)	81, 228, 231
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	81, 228, 231
FspBI	CTAG	2 cut(s)	234, 284
GluI	GCNGC	3 cut(s)	81, 228, 231
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	322
Hin1II	CATG	5 cut(s)	386, 428, 451, 460, 470
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	12, 462
Hpy166II	GTNNAC	2 cut(s)	95, 195
Hpy188I	TCNGA	3 cut(s)	102, 247, 391
Hpy188III	TCNNGA	2 cut(s)	60, 257
Hpy8I	GTNNAC	2 cut(s)	95, 195
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	29, 83, 200, 211, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 343
HpyF3I	CTNAG	5 cut(s)	8, 101, 246, 258, 474
Hsp92II	CATG	5 cut(s)	386, 428, 451, 460, 470
KflI	GGGWCCC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	242, 483
LpnPI	CCDG	9 cut(s)	15, 37, 45, 186, 197, 248, 270, 293, 379
Lsp1109I	GCAGC	3 cut(s)	67, 239, 242
LweI	GCATC	2 cut(s)	100, 437
MaeI	CTAG	2 cut(s)	234, 284
MalI	GATC	2 cut(s)	244, 485
MboI	GATC	2 cut(s)	242, 483
MboII	GAAGA	3 cut(s)	12, 252, 361
MflI	RGATCY	2 cut(s)	242, 483
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	38, 88, 125
MlyI	GAGTC	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	4 cut(s)	56, 108, 198, 411
Mph1103I	ATGCAT	1 cut(s)	430
MseI	TTAA	3 cut(s)	48, 131, 339
MwoI	GCNNNNNNNGC	2 cut(s)	268, 343
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	2 cut(s)	242, 483
NlaIII	CATG	5 cut(s)	386, 428, 451, 460, 470
NlaIV	GGNNCC	2 cut(s)	398, 399
NsiI	ATGCAT	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	462
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	82, 229, 232
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
PpuMI	RGGWCCY	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	398, 399
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	242, 483
PsyI	GACNNNGTC	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	48, 131, 339
SatI	GCNGC	3 cut(s)	81, 228, 231
Sau3AI	GATC	2 cut(s)	242, 483
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	100, 437
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	38, 88, 125
SseBI	AGGCCT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	234, 284
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	38, 88, 125
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	3 cut(s)	48, 131, 339
Tru9I	TTAA	3 cut(s)	48, 131, 339
TscAI	CASTG	2 cut(s)	228, 478
TseI	GCWGC	3 cut(s)	80, 227, 230
TspDTI	ATGAA	3 cut(s)	362, 371, 413
TspRI	CASTG	2 cut(s)	228, 478
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	2 cut(s)	234, 284
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.