Rroxscaffold_5G00367100

FR47-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
49006594 .. 49008389
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367100.1

Sequence Viewer

Length: 177 bp
ATGGACGACCCACTGAAGCTCCAGGAGTTCCGGATGAGAAATAATATGGTTGACAAGGCAGTGAACAAGTTTCTTATAAGGGAGTTCAGTGCAGACACCGATATTGAAGTGGTGGGGAAGCTAGAGAGGAACTGTGAGCTAGGGTCTAAAAGGGGGTCTCCATTTTCACTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.69

Weight (kDa)

6.17

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 107
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 3 cut(s) 19, 121, 139
AluI AGCT 3 cut(s) 19, 121, 139
Alw26I GTCTC 1 cut(s) 162
Aor13HI TCCGGA 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 2 cut(s) 122, 140
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 30
BsaXI ACNNNNNCTCC 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 30
BseBI CCWGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 30
BspEI TCCGGA 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 134
BstF5I GGATG 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 11, 66, 94
CviAII CATG 1 cut(s) 174
CviJI RGCY 3 cut(s) 19, 121, 139
CviKI_1 RGCY 3 cut(s) 19, 121, 139
Eco31I GGTCTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 177
FaiI YATR 3 cut(s) 47, 77, 175
FatI CATG 1 cut(s) 173
FokI GGATG 1 cut(s) 46
FspBI CTAG 2 cut(s) 122, 140
GsuI CTGGAG 1 cut(s) 5
HapII CCGG 1 cut(s) 31
Hin1II CATG 1 cut(s) 177
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HpaII CCGG 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 52, 64
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 52, 64
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 92
Hsp92II CATG 1 cut(s) 177
Kpn2I TCCGGA 1 cut(s) 30
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 8, 35, 44
MaeI CTAG 2 cut(s) 122, 140
MnlI CCTC 1 cut(s) 120
MroI TCCGGA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 172
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
NlaIII CATG 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 21
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 23
SetI ASST 3 cut(s) 21, 123, 141
SgeI CNNG 7 cut(s) 34, 35, 43, 67, 79, 134, 152
SmiMI CAYNNNNRTG 1 cut(s) 172
SspMI CTAG 2 cut(s) 122, 140
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 134
TscAI CASTG 3 cut(s) 18, 66, 94
TspRI CASTG 3 cut(s) 18, 66, 94
XspI CTAG 2 cut(s) 122, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.