Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015720

Physical Location & Seq

Genomic Coordinates Reverse (-)

33223611 .. 33224244

Gene Structure 634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG294000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAATCTCCAGTACATTTGCTCGGTTCTACAAATTACTGATGGACGCCATCTGGGAGCTACATTGGATATGAATACACTCCGACCGGGTGGCTTTAACGTCACCCACAGTGGACGAGTTATTATGGCCACTGAAGTTAGGGTTGTAGACGTACCTCCAGAAGATGTTTGCAGGAAAGGAAGACTAAACCTTGGAATGATGCTTTTGGTGGATTTTGAGAATCATATAGTGGTAGATGATGAAGCCTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

84

Amino Acids

9.35

Weight (kDa)

5.42

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	9 - 84	1.4e-21	Glutamine amidotransferases class-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015720)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g26310
rosa_chinensis	RchiOBHm_Chr1g0320251
rosa_laevigata	RLG00000022558 RLG00000035271
rosa_multiflora	Rmu_sc0001104.1_g000011 Rmu_sc0003833.1_g000001 Rmu_sc0006031.1_g000007 Rmu_sc0007663.1_g000008
rosa_roxburghii	Rroxscaffold_1G00030370 Rroxscaffold_5G00367100
rosa_samantha	Rh1BG166400 Rh1BG317900 Rh2BG294000 Rh4BG156000 Rh4CG143100 Rh6AG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	46
AfaI	GTAC	2 cut(s)	14, 153
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AoxI	GGCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	187
BccI	CCATC	2 cut(s)	35, 57
BcnI	CCSGG	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	46
BstMCI	CGRYCG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	115, 129
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	13, 152
CviJI	RGCY	4 cut(s)	59, 93, 128, 245
CviKI_1	RGCY	4 cut(s)	59, 93, 128, 245
CviQI	GTAC	2 cut(s)	13, 152
EaeI	YGGCCR	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaiI	YATR	4 cut(s)	71, 125, 225, 227
FblI	GTMKAC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	4, 220
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	113, 148
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	113, 148
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	2 cut(s)	99, 150
HpyCH4V	TGCA	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	99, 150
Hsp92I	GRCGYC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	23, 38, 99, 157, 171
LweI	GCATC	1 cut(s)	189
MaeII	ACGT	2 cut(s)	99, 150
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	173, 192
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	1 cut(s)	33
MluNI	TGGCCA	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	87
NciI	CCSGG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	4, 220
RsaI	GTAC	2 cut(s)	14, 153
RsaNI	GTAC	2 cut(s)	13, 152
SaqAI	TTAA	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	5 cut(s)	61, 102, 153, 157, 192
SfaNI	GCATC	1 cut(s)	189
SgeI	CNNG	9 cut(s)	22, 34, 65, 98, 99, 128, 170, 184, 203
Sse9I	AATT	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	2 cut(s)	102, 153
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	4, 220
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	115, 136
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	17, 86, 255
TspRI	CASTG	2 cut(s)	115, 136
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.