Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018219

Physical Location & Seq

Genomic Coordinates Forward (+)

11992354 .. 11995121

Gene Structure 2768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGGTTGAAGAAGAAGGCATCAGAATAGAGAAGGGGAAGGCAGAAGTGAAGGGTTGGGTAGTAAGTGCAGGACTGCAGACAAATTTGCAATTGTTAGCTGGATGTTACTTGCATAGTAATCAAGCTTATGCCGCATACCATATTTTAATGGGAACACAAGTGGCTCAATCACGCTACTTGTTTGCTATGTCATGCTATCAGATGAATCTTCTGAATGAGGCAGAAGCAGCATTATTCCCCCCTAATGAGCCTAGTGCAGAGGTTCCAAATGGCGCAGCAAGTCATTACCTTCTTGGGCTTATTTATAGGTATACTGATAGAAGGAAAAGTGCCATCCATCACTTTAAACAGGCTTTGACTATGGACCCTTCAATGTGGGCTGCGTATGAAGAGCTGTGCGTGCTAGGTTCTGCTGAAGAAGCAGCTGTGGTTTTTGGGGAAGCAGCTGCTCTCTCCATACAAAAACAGTACCTACATCATGGATTAGCTTCTCAAAGTTTACTCACCGTCAATGATGATTGCAATTTAGTTTCTGGAAGGAACTTTAGCTTTGAAGATGTTAGTCCAAGACAATTGAAACTAATGCAAGGCAGTAATACAAGAGATAGTTCTGGAAATTCTCATGTTATTTTAGGAGGAATTTCTGGTCAGCCTACAAACGGCAGTTCTAACATATCTTTCTATAACACTCCTTCACCAATGCCTATGCAGGCAACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

242

Amino Acids

26.28

Weight (kDa)

5.58

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	28 - 80	9.1e-10	Anaphase-promoting complex, cyclosome, subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018219)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005656 RLG00000006020 RLG00000018533 RLG00000022775 RLG00000029073
rosa_multiflora	Rmu_sc0027398.1_g000001 Rmu_ssc0000114.1_g000064
rosa_roxburghii	Rroxscaffold_1G00014130
rosa_samantha	Rh5CG127000 Rh5DG079800 Rh5DG110500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	1 cut(s)	135
AcsI	RAATTY	3 cut(s)	85, 619, 642
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	4 cut(s)	11, 375, 557, 580
AluBI	AGCT	7 cut(s)	101, 128, 397, 428, 449, 491, 552
AluI	AGCT	7 cut(s)	101, 128, 397, 428, 449, 491, 552
ApeKI	GCWGC	6 cut(s)	230, 278, 383, 425, 446, 449
ApoI	RAATTY	3 cut(s)	85, 619, 642
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	499, 690
AvaII	GGWCC	1 cut(s)	367
BbvI	GCAGC	6 cut(s)	242, 290, 370, 436, 437, 458
BccI	CCATC	2 cut(s)	344, 348
BceAI	ACGGC	1 cut(s)	679
BfaI	CTAG	2 cut(s)	255, 407
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	7 cut(s)	135, 231, 279, 384, 426, 447, 450
BlsI	GCNGC	7 cut(s)	136, 232, 280, 385, 427, 448, 451
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	267, 369
BmsI	GCATC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
BseGI	GGATG	2 cut(s)	110, 336
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseXI	GCAGC	6 cut(s)	242, 290, 370, 436, 437, 458
BsgI	GTGCAG	2 cut(s)	90, 279
BslI	CCNNNNNNNGG	1 cut(s)	662
BspACI	CCGC	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	267, 369
BspMAI	CTGCAG	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	387
BssNAI	GTATAC	1 cut(s)	315
Bst1107I	GTATAC	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	471, 511
Bst6I	CTCTTC	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	404, 714
BstF5I	GGATG	2 cut(s)	110, 336
BstHHI	GCGC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 230, 403, 422
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	6 cut(s)	242, 290, 370, 436, 437, 458
BstZ17I	GTATAC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	110, 336
Cac8I	GCNNGC	2 cut(s)	404, 714
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	3 cut(s)	195, 482, 626
CviQI	GTAC	1 cut(s)	472
DraI	TTTAAA	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	438
FaeI	CATG	3 cut(s)	198, 485, 629
FatI	CATG	3 cut(s)	194, 481, 625
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	7 cut(s)	135, 231, 279, 384, 426, 447, 450
FokI	GGATG	2 cut(s)	117, 323
Fsp4HI	GCNGC	7 cut(s)	135, 231, 279, 384, 426, 447, 450
FspBI	CTAG	2 cut(s)	255, 407
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	7 cut(s)	135, 231, 279, 384, 426, 447, 450
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	198, 485, 629
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	2 cut(s)	499, 690
Hpy166II	GTNNAC	2 cut(s)	315, 503
Hpy188I	TCNGA	3 cut(s)	26, 204, 216
Hpy188III	TCNNGA	2 cut(s)	537, 615
Hpy8I	GTNNAC	2 cut(s)	315, 503
HpyAV	CCTTC	9 cut(s)	11, 28, 34, 46, 302, 318, 381, 534, 705
HpyCH4III	ACNGT	2 cut(s)	471, 511
HpyCH4V	TGCA	8 cut(s)	71, 79, 91, 115, 260, 525, 589, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 230, 403, 422
Hsp92II	CATG	3 cut(s)	198, 485, 629
HspAI	GCGC	1 cut(s)	276
LguI	GCTCTTC	1 cut(s)	387
LpnPI	CCDG	7 cut(s)	57, 87, 338, 522, 600, 633, 698
Lsp1109I	GCAGC	6 cut(s)	242, 290, 370, 436, 437, 458
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	2 cut(s)	255, 407
MaeIII	GTNAC	1 cut(s)	107
MboII	GAAGA	6 cut(s)	23, 26, 203, 404, 431, 569
MfeI	CAATTG	2 cut(s)	92, 575
MluCI	AATT	6 cut(s)	85, 92, 526, 575, 619, 642
MnlI	CCTC	3 cut(s)	214, 256, 632
MseI	TTAA	3 cut(s)	149, 348, 724
MspA1I	CMGCKG	2 cut(s)	428, 449
MunI	CAATTG	2 cut(s)	92, 575
MwoI	GCNNNNNNNGC	4 cut(s)	134, 230, 403, 422
NlaIII	CATG	3 cut(s)	198, 485, 629
NlaIV	GGNNCC	2 cut(s)	267, 369
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	7 cut(s)	136, 232, 280, 385, 427, 448, 451
PspN4I	GGNNCC	2 cut(s)	267, 369
PspPI	GGNCC	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	81
PvuII	CAGCTG	2 cut(s)	428, 449
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	149, 348, 724
SatI	GCNGC	7 cut(s)	135, 231, 279, 384, 426, 447, 450
Sau96I	GGNCC	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	367
Sse9I	AATT	6 cut(s)	85, 92, 526, 575, 619, 642
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	2 cut(s)	255, 407
TaaI	ACNGT	2 cut(s)	471, 511
TasI	AATT	6 cut(s)	85, 92, 526, 575, 619, 642
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	149, 348, 724
Tru9I	TTAA	3 cut(s)	149, 348, 724
TseI	GCWGC	6 cut(s)	230, 278, 383, 425, 446, 449
TspDTI	ATGAA	2 cut(s)	221, 405
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	3 cut(s)	85, 619, 642
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	2 cut(s)	255, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.