Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018219

Physical Location & Seq

Genomic Coordinates Forward (+)

10072336 .. 10074327

Gene Structure 1992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGCATGGAAATCGAGAAGATTGATAGAAAAAGGCGAGATCGTCTAGGGTCGGCCATTGGCACAAATTTGCAATTGTTAGCTGGATGTTACTTGCATAGTAATCAAGCTTATGCCGCATACCATATTTTAAAGGGAACACAAGTGGCTCAATCACGCTACTTGTTTGCTATGTCATGCTATCAGATGAATCTTCTGAATGCGGCAGAAGCAGCATTATGCCCCCCTAATGAGCCTAGTGCAGAGGTTCCAAATGGCGCAGCAGGTCATTACCTTCTTGGGCTTATTTATAGGTATGCTGATAGAAGGAAAAGTGCCATCCATCACTTTAAACAGGCTTTGACTATAGACCCTTCAATGTGGGCTGTGTATGAAGAGCTGTGCGTGCTAGGTTCTGCTGAAGAAGCAGCTGTGGTTTTTGGGGAAGCTGCTGCTCTCTCCATACAAAAACAGTACCTACATCATGGATTAGCTTCTCAAAGTTTACTCACCGTCAATGATGATTGCAATTTAGTTTCTGGAAGGAACTTTAGCTTTGAAGATGTTAGTCCAAGACAATTGAAACTAATGCAAGGCAGTAATACAAGAGATAGTTCTGGAAATTCTCATGTTATTTTAGGAGGAGTTTCTGGTCAGCCTACAAACGGCAGTTCTAACATATCTTTCTATAACACTCCTTCACCAATGCCTATGCAGGTATATATGAAGTTTTTTCTTCATTTATTTTCCGCAGTCTTCTCACATATTGCTGCATCTATTTTCTTTGACACTTCACTCAATATTACTCTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

264

Amino Acids

29.02

Weight (kDa)

6.54

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	23 - 74	2e-08	Anaphase-promoting complex, cyclosome, subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018219)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005656 RLG00000006020 RLG00000018533 RLG00000022775 RLG00000029073
rosa_multiflora	Rmu_sc0027398.1_g000001 Rmu_ssc0000114.1_g000064
rosa_roxburghii	Rroxscaffold_1G00014130
rosa_samantha	Rh5CG127000 Rh5DG079800 Rh5DG110500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	254, 685
AciI	CCGC	3 cut(s)	117, 203, 729
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	67, 601
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	3 cut(s)	357, 539, 562
AluBI	AGCT	7 cut(s)	83, 110, 379, 410, 428, 473, 534
AluI	AGCT	7 cut(s)	83, 110, 379, 410, 428, 473, 534
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	6 cut(s)	212, 260, 407, 428, 431, 749
ApoI	RAATTY	2 cut(s)	67, 601
AspLEI	GCGC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	481, 672
AvaI	CYCGRG	1 cut(s)	788
BbsI	GAAGAC	1 cut(s)	727
BbvI	GCAGC	6 cut(s)	224, 272, 415, 418, 419, 736
BccI	CCATC	2 cut(s)	326, 330
BceAI	ACGGC	1 cut(s)	661
BcgI	CGANNNNNNTGC	1 cut(s)	29
BfaI	CTAG	3 cut(s)	47, 237, 389
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	2 cut(s)	254, 685
BisI	GCNGC	8 cut(s)	117, 204, 213, 261, 408, 429, 432, 750
BlsI	GCNGC	8 cut(s)	118, 205, 214, 262, 409, 430, 433, 751
BmeT110I	CYCGRG	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
BseGI	GGATG	2 cut(s)	92, 318
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	6 cut(s)	224, 272, 415, 418, 419, 736
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	788
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	788
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	3 cut(s)	117, 203, 729
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	249
BspMI	ACCTGC	2 cut(s)	254, 685
BspQI	GCTCTTC	1 cut(s)	369
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	453, 493
Bst6I	CTCTTC	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	92, 318
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 209, 212, 385, 404
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	6 cut(s)	224, 272, 415, 418, 419, 736
BstV2I	GAAGAC	1 cut(s)	727
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	92, 318
BveI	ACCTGC	2 cut(s)	254, 685
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	4 cut(s)	7, 177, 464, 608
CviQI	GTAC	1 cut(s)	454
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraI	TTTAAA	2 cut(s)	132, 331
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	788
FaeI	CATG	4 cut(s)	10, 180, 467, 611
FatI	CATG	4 cut(s)	6, 176, 463, 607
Fnu4HI	GCNGC	8 cut(s)	117, 204, 213, 261, 408, 429, 432, 750
FokI	GGATG	2 cut(s)	99, 305
Fsp4HI	GCNGC	8 cut(s)	117, 204, 213, 261, 408, 429, 432, 750
FspBI	CTAG	3 cut(s)	47, 237, 389
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	8 cut(s)	117, 204, 213, 261, 408, 429, 432, 750
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	4 cut(s)	10, 180, 467, 611
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	190
HphI	GGTGA	2 cut(s)	481, 672
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	2 cut(s)	186, 198
Hpy188III	TCNNGA	4 cut(s)	16, 519, 597, 788
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	5 cut(s)	284, 300, 363, 516, 687
HpyCH4III	ACNGT	2 cut(s)	453, 493
HpyCH4V	TGCA	7 cut(s)	73, 97, 242, 507, 571, 694, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 209, 212, 385, 404
Hsp92II	CATG	4 cut(s)	10, 180, 467, 611
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	40
LguI	GCTCTTC	1 cut(s)	369
LpnPI	CCDG	7 cut(s)	69, 249, 320, 504, 582, 615, 680
Lsp1109I	GCAGC	6 cut(s)	224, 272, 415, 418, 419, 736
LweI	GCATC	1 cut(s)	761
MaeI	CTAG	3 cut(s)	47, 237, 389
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	7 cut(s)	31, 185, 386, 413, 551, 707, 727
MfeI	CAATTG	2 cut(s)	74, 557
MluCI	AATT	5 cut(s)	67, 74, 508, 557, 601
MnlI	CCTC	2 cut(s)	238, 614
MseI	TTAA	2 cut(s)	131, 330
MspA1I	CMGCKG	1 cut(s)	410
MunI	CAATTG	2 cut(s)	74, 557
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	5 cut(s)	116, 209, 212, 385, 404
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	10, 180, 467, 611
NlaIV	GGNNCC	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	788
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	8 cut(s)	118, 205, 214, 262, 409, 430, 433, 751
PspN4I	GGNNCC	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	131, 330
SatI	GCNGC	8 cut(s)	117, 204, 213, 261, 408, 429, 432, 750
Sau3AI	GATC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	1 cut(s)	345
Sfr274I	CTCGAG	1 cut(s)	788
SlaI	CTCGAG	1 cut(s)	788
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	5 cut(s)	67, 74, 508, 557, 601
SsiI	CCGC	3 cut(s)	117, 203, 729
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	3 cut(s)	47, 237, 389
TaaI	ACNGT	2 cut(s)	453, 493
TaqI	TCGA	2 cut(s)	15, 789
TasI	AATT	5 cut(s)	67, 74, 508, 557, 601
TauI	GCSGC	2 cut(s)	119, 206
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	131, 330
Tru9I	TTAA	2 cut(s)	131, 330
TseI	GCWGC	6 cut(s)	212, 260, 407, 428, 431, 749
TspDTI	ATGAA	4 cut(s)	203, 387, 707, 719
XapI	RAATTY	2 cut(s)	67, 601
XhoI	CTCGAG	1 cut(s)	788
XspI	CTAG	3 cut(s)	47, 237, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.