Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027398.1

Orthogroup ID

OG0018219

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2790

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027398.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

acaaatttgcaattgttagctggatgttacttgcatagtaatcaagcttatgccgcataccatattttaaagggaacacaagtggctcaatcacgctacttgtttgctatgtcatgctatcagatgaatcttctgaatgcggcagaagcagcattatgcccccctaatgagcctagtgcagaggttccaaatggcgcagcaggtcattaccttcttgggcttatttataggtatgctgatagaaggaaaagtgccatccatcactttaaacaggctttgactatagacccttcaatgtgggctgtgtatgaagagctgtgcgtgctaggttctgctgaagaagcagctgtggtttttggggaagctgctgctctctccatacaaaaacagtacctacatcatggattagcttctcaaagtttactcaccgtcaatgatgattgcaatttagtttctggaaggaactttagctttgaagatgttagtccaagacaattgaaactaatgcaaggcagtaatacaagagatagttctggaaattctcatgttattttaggaggagtttctggtcagcctacaaacggcagttctaacatatctttctataacactccttcaccaatgcctatgcaggtatatatgaagttttttcttcatttattttccgcagtcttctcacatattgctgcatctattttctttgacacttcactcaatattactctcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

243

Amino Acids

26.58

Weight (kDa)

6.17

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018219)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005656 RLG00000006020 RLG00000018533 RLG00000022775 RLG00000029073
rosa_multiflora	Rmu_sc0027398.1_g000001 Rmu_ssc0000114.1_g000064
rosa_roxburghii	Rroxscaffold_1G00014130
rosa_samantha	Rh5CG127000 Rh5DG079800 Rh5DG110500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	191, 622
AciI	CCGC	3 cut(s)	54, 140, 666
AcsI	RAATTY	2 cut(s)	4, 538
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	294, 476, 499
AluBI	AGCT	7 cut(s)	20, 47, 316, 347, 365, 410, 471
AluI	AGCT	7 cut(s)	20, 47, 316, 347, 365, 410, 471
Ama87I	CYCGRG	1 cut(s)	725
ApeKI	GCWGC	6 cut(s)	149, 197, 344, 365, 368, 686
ApoI	RAATTY	2 cut(s)	4, 538
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	418, 609
AvaI	CYCGRG	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	664
BbvI	GCAGC	6 cut(s)	161, 209, 352, 355, 356, 673
BccI	CCATC	2 cut(s)	263, 267
BceAI	ACGGC	1 cut(s)	598
BfaI	CTAG	2 cut(s)	174, 326
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	2 cut(s)	191, 622
BisI	GCNGC	8 cut(s)	54, 141, 150, 198, 345, 366, 369, 687
BlsI	GCNGC	8 cut(s)	55, 142, 151, 199, 346, 367, 370, 688
BmeT110I	CYCGRG	1 cut(s)	725
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	1 cut(s)	698
BpiI	GAAGAC	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
BseGI	GGATG	2 cut(s)	29, 255
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	6 cut(s)	161, 209, 352, 355, 356, 673
BsgI	GTGCAG	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	725
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	725
BspACI	CCGC	3 cut(s)	54, 140, 666
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	2 cut(s)	191, 622
BspQI	GCTCTTC	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	390, 430
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	29, 255
BstHHI	GCGC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 146, 149, 322, 341
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	6 cut(s)	161, 209, 352, 355, 356, 673
BstV2I	GAAGAC	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	29, 255
BveI	ACCTGC	2 cut(s)	191, 622
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	3 cut(s)	114, 401, 545
CviQI	GTAC	1 cut(s)	391
DraI	TTTAAA	2 cut(s)	69, 268
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	725
FaeI	CATG	3 cut(s)	117, 404, 548
FatI	CATG	3 cut(s)	113, 400, 544
Fnu4HI	GCNGC	8 cut(s)	54, 141, 150, 198, 345, 366, 369, 687
FokI	GGATG	2 cut(s)	36, 242
Fsp4HI	GCNGC	8 cut(s)	54, 141, 150, 198, 345, 366, 369, 687
FspBI	CTAG	2 cut(s)	174, 326
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	8 cut(s)	54, 141, 150, 198, 345, 366, 369, 687
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	117, 404, 548
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	2 cut(s)	418, 609
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	123, 135
Hpy188III	TCNNGA	3 cut(s)	456, 534, 725
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	5 cut(s)	221, 237, 300, 453, 624
HpyCH4III	ACNGT	2 cut(s)	390, 430
HpyCH4V	TGCA	7 cut(s)	10, 34, 179, 444, 508, 631, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 146, 149, 322, 341
Hsp92II	CATG	3 cut(s)	117, 404, 548
HspAI	GCGC	1 cut(s)	195
LguI	GCTCTTC	1 cut(s)	306
LpnPI	CCDG	7 cut(s)	6, 186, 257, 441, 519, 552, 617
Lsp1109I	GCAGC	6 cut(s)	161, 209, 352, 355, 356, 673
LweI	GCATC	1 cut(s)	698
MaeI	CTAG	2 cut(s)	174, 326
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	6 cut(s)	122, 323, 350, 488, 644, 664
MfeI	CAATTG	2 cut(s)	11, 494
MluCI	AATT	5 cut(s)	4, 11, 445, 494, 538
MnlI	CCTC	2 cut(s)	175, 551
MseI	TTAA	2 cut(s)	68, 267
MspA1I	CMGCKG	1 cut(s)	347
MunI	CAATTG	2 cut(s)	11, 494
Mva1269I	GAATGC	1 cut(s)	142
MwoI	GCNNNNNNNGC	5 cut(s)	53, 146, 149, 322, 341
NlaIII	CATG	3 cut(s)	117, 404, 548
NlaIV	GGNNCC	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	306
PctI	GAATGC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	8 cut(s)	55, 142, 151, 199, 346, 367, 370, 688
PspN4I	GGNNCC	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	68, 267
SatI	GCNGC	8 cut(s)	54, 141, 150, 198, 345, 366, 369, 687
SfaNI	GCATC	1 cut(s)	698
SfcI	CTRYAG	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	725
SlaI	CTCGAG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	5 cut(s)	4, 11, 445, 494, 538
SsiI	CCGC	3 cut(s)	54, 140, 666
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	2 cut(s)	174, 326
TaaI	ACNGT	2 cut(s)	390, 430
TaqI	TCGA	1 cut(s)	726
TasI	AATT	5 cut(s)	4, 11, 445, 494, 538
TauI	GCSGC	2 cut(s)	56, 143
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	68, 267
Tru9I	TTAA	2 cut(s)	68, 267
TseI	GCWGC	6 cut(s)	149, 197, 344, 365, 368, 686
TspDTI	ATGAA	4 cut(s)	140, 324, 644, 656
XapI	RAATTY	2 cut(s)	4, 538
XhoI	CTCGAG	1 cut(s)	725
XspI	CTAG	2 cut(s)	174, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.