Rh5CG127000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018219
Physical Location & Seq
Forward (+)
10593773 .. 10594213
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG127000.1

Sequence Viewer

Length: 201 bp
ATGGAGGTGATTCTCGGTGAAGGCGCAGATCCGGCGCCATCGATCGTCGCCGATGTTGGTGGATCGGCGGTCGCAATTCAGAGCAAGTTTTGTGAAGGCGTCGAAGCGGAAGAAGAGAGAGAGGATGGTGAGGGCTCTGTTCCTCGACCGTCAACTACCACCGGCAGACCAAAGAGCATCTTTTCCGGTCGCCGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.81

Weight (kDa)

4.52

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 2 cut(s) 68, 107
AclWI GGATC 2 cut(s) 23, 70
AcyI GRCGYC 2 cut(s) 35, 99
AfiI CCNNNNNNNGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
AlwI GGATC 2 cut(s) 23, 70
AspLEI GCGC 2 cut(s) 26, 37
AsuHPI GGTGA 3 cut(s) 19, 29, 140
BanI GGYRCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 137
BccI CCATC 2 cut(s) 46, 119
BfoI RGCGCY 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 41
BsaHI GRCGYC 2 cut(s) 35, 99
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 41
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 192
Bsh1285I CGRYCG 4 cut(s) 45, 72, 149, 190
BshNI GGYRCC 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 41
BsiEI CGRYCG 4 cut(s) 45, 72, 149, 190
BsiSI CCGG 4 cut(s) 32, 162, 186, 193
BslI CCNNNNNNNGG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 28, 42, 62
BspACI CCGC 2 cut(s) 68, 107
BspDI ATCGAT 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 2 cut(s) 23, 70
BspT107I GGYRCC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssMI GATC 3 cut(s) 28, 42, 62
BssNI GRCGYC 2 cut(s) 35, 99
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 2 cut(s) 35, 99
BstF5I GGATG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 2 cut(s) 26, 37
BstKTI GATC 3 cut(s) 31, 45, 65
BstMBI GATC 3 cut(s) 28, 42, 62
BstMCI CGRYCG 4 cut(s) 45, 72, 149, 190
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 41
BtsCI GGATG 1 cut(s) 130
CfoI GCGC 2 cut(s) 26, 37
Cfr10I RCCGGY 1 cut(s) 161
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 1 cut(s) 88
CviJI RGCY 2 cut(s) 135, 198
CviKI_1 RGCY 2 cut(s) 135, 198
DinI GGCGCC 1 cut(s) 36
DpnI GATC 3 cut(s) 30, 44, 64
DpnII GATC 3 cut(s) 28, 42, 62
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 137
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 137
GlaI GCGC 2 cut(s) 25, 36
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 4 cut(s) 32, 162, 186, 193
HgaI GACGC 1 cut(s) 88
HhaI GCGC 2 cut(s) 26, 37
Hin1I GRCGYC 2 cut(s) 35, 99
Hin6I GCGC 2 cut(s) 24, 35
HinP1I GCGC 2 cut(s) 24, 35
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 1 cut(s) 10
HpaII CCGG 4 cut(s) 32, 162, 186, 193
HphI GGTGA 3 cut(s) 19, 29, 140
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 153
Hpy99I CGWCG 2 cut(s) 50, 104
HpyAV CCTTC 2 cut(s) 14, 89
HpyCH4III ACNGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92I GRCGYC 2 cut(s) 35, 99
HspAI GCGC 2 cut(s) 24, 35
KasI GGCGCC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 28, 42, 62
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 2 cut(s) 45, 175
LweI GCATC 1 cut(s) 186
MalI GATC 3 cut(s) 30, 44, 64
MboI GATC 3 cut(s) 28, 42, 62
MboII GAAGA 2 cut(s) 122, 125
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 1 cut(s) 75
Mly113I GGCGCC 1 cut(s) 35
MnlI CCTC 3 cut(s) 115, 124, 153
MspI CCGG 4 cut(s) 32, 162, 186, 193
MwoI GCNNNNNNNGC 1 cut(s) 32
NarI GGCGCC 1 cut(s) 35
NdeII GATC 3 cut(s) 28, 42, 62
NlaIV GGNNCC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 10
Ple19I CGATCG 1 cut(s) 45
PluTI GGCGCC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 28
PvuI CGATCG 1 cut(s) 45
Sau3AI GATC 3 cut(s) 28, 42, 62
SduI GDGCHC 1 cut(s) 137
SetI ASST 2 cut(s) 9, 200
SfaNI GCATC 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 36
SgeI CNNG 5 cut(s) 26, 44, 97, 156, 174
Sse9I AATT 1 cut(s) 75
SsiI CCGC 2 cut(s) 68, 107
SspDI GGCGCC 1 cut(s) 34
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 41, 102, 145
TasI AATT 1 cut(s) 75
TfiI GAWTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.