Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0018219

Physical Location & Seq

Genomic Coordinates Forward (+)

337372 .. 342341

Gene Structure 4970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000064.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggaggtgattctcggtgaaggcgcagatccggagccatcgatcgtcgcagatgttggtggatcggctgtcgcacttcatagcaagttttgtgaaagcgtcgaagcggaagaagagagagaggatgaaggttacggtcccgtctccagcggagttttctgggcccgagttgttgagcaagctggaatcggcatctgggcatgtaaattggctgtgaaaggacagagctggctaagctgcaaaaggaagaagacgactagaacagttttcaagcttatcaacttgtcatttaaaacgacgccgttatggctgcttgttcttcttcaacttacaaatttgcaattgttagctggatgttacttgcatagtaatcaagcttatgccgcataccatattttaaagggaacacaagtggctcaatcacgctacttgtttgctatgtcatgctatcagatgaatcttctgaatgcggcagaagcagcattatgcccccctaatgagcctagtgcagaggttccaaatggcgcagcaggtcattaccttcttgggcttatttataggtatgctgatagaaggaaaagtgccatccatcactttaaacaggctttgactatagacccttcaatgtgggctgtgtatgaagagctgtgcgtgctaggttctgctgaagaagcagctgtggtttttggggaagctgctgctctctccatacaaaaacagtacctacatcatggattagcttctcaaagtttactcaccgtcaatgatgattgcaatttagtttctggaaggaactttagctttgaagatgttagtccaagacaattgaaactaatgcaaggcagtaatacaagagatagttctggaaattctcatgttattttaggaggagtttctggtcagcctacaaacggcagttctaacatatctttctataacactccttcaccaatgcctatgcaggagccatttgtgctggtgtatgatttgatttgctttgaggtggtggatcaaagtaaaaccagatgcagggagatggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

347

Amino Acids

37.98

Weight (kDa)

5.74

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018219)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005656 RLG00000006020 RLG00000018533 RLG00000022775 RLG00000029073
rosa_multiflora	Rmu_sc0027398.1_g000001 Rmu_ssc0000114.1_g000064
rosa_roxburghii	Rroxscaffold_1G00014130
rosa_samantha	Rh5CG127000 Rh5DG079800 Rh5DG110500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	4 cut(s)	107, 150, 384, 470
AclWI	GGATC	3 cut(s)	23, 70, 1017
AcsI	RAATTY	2 cut(s)	334, 868
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	911, 1029
AgsI	TTSAA	5 cut(s)	271, 326, 624, 806, 829
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	23, 70, 1017
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	1 cut(s)	162
ApaI	GGGCCC	1 cut(s)	166
ApeKI	GCWGC	7 cut(s)	237, 310, 479, 527, 674, 695, 698
ApoI	RAATTY	2 cut(s)	334, 868
AspLEI	GCGC	2 cut(s)	26, 527
AspS9I	GGNCC	3 cut(s)	137, 162, 163
AsuHPI	GGTGA	4 cut(s)	19, 29, 748, 939
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
BccI	CCATC	4 cut(s)	46, 593, 597, 1030
BceAI	ACGGC	2 cut(s)	286, 928
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	3 cut(s)	258, 504, 656
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	521
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	9 cut(s)	239, 312, 385, 472, 481, 529, 676, 697, 700
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	137, 162, 163
BmiI	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
BmsI	GCATC	2 cut(s)	201, 1016
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	911, 1029
BseAI	TCCGGA	1 cut(s)	31
BseCI	ATCGAT	1 cut(s)	41
BseGI	GGATG	3 cut(s)	130, 359, 585
BseLI	CCNNNNNNNGG	2 cut(s)	911, 1029
BseRI	GAGGAG	1 cut(s)	903
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
BsgI	GTGCAG	1 cut(s)	528
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	911, 1029
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	165
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	28, 42, 62, 1009
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	4 cut(s)	107, 150, 384, 470
BspANI	GGCC	1 cut(s)	164
BspDI	ATCGAT	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	23, 70, 1017
BspQI	GCTCTTC	1 cut(s)	636
BssMI	GATC	4 cut(s)	28, 42, 62, 1009
BssNI	GRCGYC	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	137, 265, 720, 760
Bst6I	CTCTTC	2 cut(s)	108, 636
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	180, 230, 653
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	130, 359, 585
BstHHI	GCGC	2 cut(s)	26, 527
BstKTI	GATC	4 cut(s)	31, 45, 65, 1012
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	4 cut(s)	28, 42, 62, 1009
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	8 cut(s)	234, 307, 383, 476, 479, 652, 671, 973
BstNSI	RCATGY	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	164
BsuTUI	ATCGAT	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	130, 359, 585
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	180, 230, 653
CfoI	GCGC	2 cut(s)	26, 527
Cfr13I	GGNCC	3 cut(s)	137, 162, 163
ClaI	ATCGAT	1 cut(s)	41
CseI	GACGC	2 cut(s)	88, 307
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	4 cut(s)	201, 444, 731, 875
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	4 cut(s)	30, 44, 64, 1011
DpnII	GATC	4 cut(s)	28, 42, 62, 1009
DraI	TTTAAA	3 cut(s)	292, 399, 598
Eam1104I	CTCTTC	2 cut(s)	108, 636
EarI	CTCTTC	2 cut(s)	108, 636
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	4 cut(s)	204, 447, 734, 878
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	200, 443, 730, 874
Fnu4HI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
FokI	GGATG	3 cut(s)	137, 366, 572
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
FspBI	CTAG	3 cut(s)	258, 504, 656
GlaI	GCGC	2 cut(s)	25, 526
GluI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	2 cut(s)	88, 307
HhaI	GCGC	2 cut(s)	26, 527
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	204, 447, 734, 878
Hin6I	GCGC	2 cut(s)	24, 525
HinP1I	GCGC	2 cut(s)	24, 525
HindIII	AAGCTT	2 cut(s)	272, 375
HinfI	GANTC	3 cut(s)	10, 186, 457
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	4 cut(s)	19, 29, 748, 939
Hpy166II	GTNNAC	1 cut(s)	752
Hpy188I	TCNGA	2 cut(s)	453, 465
Hpy188III	TCNNGA	3 cut(s)	32, 786, 864
Hpy8I	GTNNAC	1 cut(s)	752
Hpy99I	CGWCG	3 cut(s)	50, 104, 301
HpyAV	CCTTC	7 cut(s)	14, 122, 551, 567, 630, 783, 954
HpyCH4III	ACNGT	4 cut(s)	137, 265, 720, 760
HpyCH4V	TGCA	8 cut(s)	240, 340, 364, 509, 774, 838, 961, 1029
HpyF10VI	GCNNNNNNNGC	8 cut(s)	234, 307, 383, 476, 479, 652, 671, 973
HpyF3I	CTNAG	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	204, 447, 734, 878
HspAI	GCGC	2 cut(s)	24, 525
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	28, 42, 62, 1009
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	2 cut(s)	34, 964
Lsp1109I	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
LweI	GCATC	2 cut(s)	201, 1016
MaeI	CTAG	3 cut(s)	258, 504, 656
MaeIII	GTNAC	2 cut(s)	131, 356
MalI	GATC	4 cut(s)	30, 44, 64, 1011
MboI	GATC	4 cut(s)	28, 42, 62, 1009
MfeI	CAATTG	2 cut(s)	341, 824
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	6 cut(s)	206, 334, 341, 775, 824, 868
MnlI	CCTC	4 cut(s)	115, 505, 881, 994
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	4 cut(s)	291, 398, 597, 1042
MspA1I	CMGCKG	2 cut(s)	150, 677
MspI	CCGG	1 cut(s)	32
MunI	CAATTG	2 cut(s)	341, 824
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	8 cut(s)	234, 307, 383, 476, 479, 652, 671, 973
NdeII	GATC	4 cut(s)	28, 42, 62, 1009
NlaIII	CATG	4 cut(s)	204, 447, 734, 878
NlaIV	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
NspI	RCATGY	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	10, 186, 457
PkrI	GCNGC	9 cut(s)	239, 312, 385, 472, 481, 529, 676, 697, 700
Ple19I	CGATCG	1 cut(s)	45
PspN4I	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	137, 162, 163
PsuI	RGATCY	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	291, 398, 597, 1042
SatI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
Sau3AI	GATC	4 cut(s)	28, 42, 62, 1009
Sau96I	GGNCC	3 cut(s)	137, 162, 163
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	201, 1016
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	137
Sse9I	AATT	6 cut(s)	206, 334, 341, 775, 824, 868
SsiI	CCGC	4 cut(s)	107, 150, 384, 470
SspMI	CTAG	3 cut(s)	258, 504, 656
TaaI	ACNGT	4 cut(s)	137, 265, 720, 760
TaqI	TCGA	2 cut(s)	41, 102
TasI	AATT	6 cut(s)	206, 334, 341, 775, 824, 868
TauI	GCSGC	2 cut(s)	386, 473
TfiI	GAWTC	3 cut(s)	10, 186, 457
Tru1I	TTAA	4 cut(s)	291, 398, 597, 1042
Tru9I	TTAA	4 cut(s)	291, 398, 597, 1042
TseI	GCWGC	7 cut(s)	237, 310, 479, 527, 674, 695, 698
TspDTI	ATGAA	4 cut(s)	68, 141, 470, 654
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	334, 868
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	3 cut(s)	258, 504, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.