Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018219

Physical Location & Seq

Genomic Coordinates Reverse (-)

6972535 .. 6977632

Gene Structure 5098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACATTAATTCAAGGAGGGGGCGTAAATGGAGTCCATCGACATCGTGCAAAGAAGAGTAATGTTTTTCAAGTCTACGTTGCTAAGAAAGTGGTGGAGGTGGTTCAACAGATTGGAAACCCCTCCTCTGCTAATCCTAATGCATCATCTGGGATTTCACGGATAGTACATACTGACATGGTCAAGACTTCACAGGCCCTCGCAAATGAGTTTGAGACTGATAGCAAGGGAGAGACCACAGAGATACAATCTAGGGATGATGTGCAACGTGGAGCGGATGTTAGCATTGAAGAAGATACTATTTCCAAAACTCCTTCCCCTAAGGAGTTACCTAAAGATATGGCTCAGTCCGAATCTGATACAAATTTGCAATTGTTAGCTGGATGTTACTTGCATAGTAATCAAGCTTATGCCGCATACCATATTTTAAAGGGAACACAAGTGGCTCAATCACGCTACTTGTTTGCTATGTCATGCTATCAGATGAATCTTCTGAATGCGGCAGAAGCAGCATTATGCCCCCCTAATGAGCCTAGTGCAGAGGTTCCAAATGGCGCAGCAGGTCATTACCTTCTTGGGCTTATTTATAGGTATGCTGATAGAAGGAAAAGTGCCATCCATCACTTTAAACAGGCTTTGACTATAGACCCTTCAATGTGGGCTGTGTATGAAGAGCTGTGCGTGCTAGGTTCTGCTGAAGAAGCAGCTGTGGTTTTTGGGGAAGCTGCTGCTCTCTCCATACAAAAACAGTACCTACATCATGGATTAGCTTCTCAAAGTTTACTCACCGTCAATGATGATTGCAATTTAGTTTCTGGAAGGAACTTTAGCTTTGAAGATGTTAGTCCAAGACAATTGAAACTAATGCAAGGCAGTAATACAAGAGATAGTTCTGGAAATTCTCATGTTATTTTAGGAGGAGTTTCTGGTCAGCCTACAAACGGCAGTTCTAACATATCTTTCTATAACACTCCTTCACCAATGCCTATGCAGGAGCCATTTGTGCTGGTGTATGATTTGATTTGCTTTGAGGTGGTGGATCAAAGTAAAACCAGATGCAGGGAGATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

357

Amino Acids

38.94

Weight (kDa)

5.77

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	115 - 173	3.9e-10	Anaphase-promoting complex, cyclosome, subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018219)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005656 RLG00000006020 RLG00000018533 RLG00000022775 RLG00000029073
rosa_multiflora	Rmu_sc0027398.1_g000001 Rmu_ssc0000114.1_g000064
rosa_roxburghii	Rroxscaffold_1G00014130
rosa_samantha	Rh5CG127000 Rh5DG079800 Rh5DG110500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	3 cut(s)	275, 414, 500
AclWI	GGATC	1 cut(s)	1047
AcsI	RAATTY	2 cut(s)	364, 898
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	168, 752
AfiI	CCNNNNNNNGG	2 cut(s)	941, 1059
AgsI	TTSAA	7 cut(s)	14, 71, 107, 290, 654, 836, 859
AluBI	AGCT	7 cut(s)	380, 407, 676, 707, 725, 770, 831
AluI	AGCT	7 cut(s)	380, 407, 676, 707, 725, 770, 831
Alw26I	GTCTC	2 cut(s)	209, 227
AlwI	GGATC	1 cut(s)	1047
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	5 cut(s)	509, 557, 704, 725, 728
ApoI	RAATTY	2 cut(s)	364, 898
AseI	ATTAAT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	778, 969
AxyI	CCTNAGG	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	521, 569, 712, 715, 716
BccI	CCATC	4 cut(s)	45, 623, 627, 1060
BceAI	ACGGC	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	209, 227
BfaI	CTAG	3 cut(s)	252, 534, 686
BfmI	CTRYAG	1 cut(s)	642
BfuAI	ACCTGC	1 cut(s)	551
BisI	GCNGC	7 cut(s)	414, 501, 510, 558, 705, 726, 729
BlsI	GCNGC	7 cut(s)	415, 502, 511, 559, 706, 727, 730
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	546, 996
BmsI	GCATC	2 cut(s)	152, 1046
BsaI	GGTCTC	1 cut(s)	227
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	941, 1059
Bse21I	CCTNAGG	1 cut(s)	321
BseGI	GGATG	4 cut(s)	262, 283, 389, 615
BseLI	CCNNNNNNNGG	2 cut(s)	941, 1059
BseMII	CTCAG	1 cut(s)	359
BseRI	GAGGAG	2 cut(s)	115, 933
BseXI	GCAGC	5 cut(s)	521, 569, 712, 715, 716
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	941, 1059
BsmAI	GTCTC	2 cut(s)	209, 227
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	1039
BspACI	CCGC	3 cut(s)	275, 414, 500
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	546, 996
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	1 cut(s)	1047
BspQI	GCTCTTC	1 cut(s)	666
BspTNI	GGTCTC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	275
BssMI	GATC	1 cut(s)	1039
Bst4CI	ACNGT	2 cut(s)	750, 790
Bst6I	CTCTTC	2 cut(s)	50, 666
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	3 cut(s)	84, 321, 345
BstF5I	GGATG	4 cut(s)	262, 283, 389, 615
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	1 cut(s)	1042
BstMAI	GTCTC	2 cut(s)	209, 227
BstMBI	GATC	1 cut(s)	1039
BstMWI	GCNNNNNNNGC	6 cut(s)	413, 506, 509, 682, 701, 1003
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	5 cut(s)	521, 569, 712, 715, 716
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	4 cut(s)	262, 283, 389, 615
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	683
CfoI	GCGC	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	167, 751
CviAII	CATG	4 cut(s)	178, 474, 761, 905
CviQI	GTAC	2 cut(s)	167, 751
DdeI	CTNAG	3 cut(s)	84, 321, 345
DpnI	GATC	1 cut(s)	1041
DpnII	GATC	1 cut(s)	1039
DraI	TTTAAA	2 cut(s)	429, 628
Eam1104I	CTCTTC	2 cut(s)	50, 666
EarI	CTCTTC	2 cut(s)	50, 666
Eco31I	GGTCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	717
Eco81I	CCTNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	145
FaeI	CATG	4 cut(s)	181, 477, 764, 908
FatI	CATG	4 cut(s)	177, 473, 760, 904
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	7 cut(s)	414, 501, 510, 558, 705, 726, 729
FokI	GGATG	4 cut(s)	269, 290, 396, 602
Fsp4HI	GCNGC	7 cut(s)	414, 501, 510, 558, 705, 726, 729
FspBI	CTAG	3 cut(s)	252, 534, 686
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	7 cut(s)	414, 501, 510, 558, 705, 726, 729
HaeIII	GGCC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	181, 477, 764, 908
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	3 cut(s)	33, 353, 487
HphI	GGTGA	2 cut(s)	778, 969
Hpy166II	GTNNAC	2 cut(s)	76, 782
Hpy188I	TCNGA	4 cut(s)	352, 358, 483, 495
Hpy188III	TCNNGA	3 cut(s)	184, 816, 894
Hpy8I	GTNNAC	2 cut(s)	76, 782
HpyAV	CCTTC	6 cut(s)	324, 581, 597, 660, 813, 984
HpyCH4III	ACNGT	2 cut(s)	750, 790
HpyCH4IV	ACGT	2 cut(s)	78, 268
HpyF10VI	GCNNNNNNNGC	6 cut(s)	413, 506, 509, 682, 701, 1003
HpyF3I	CTNAG	3 cut(s)	84, 321, 345
HpySE526I	ACGT	2 cut(s)	78, 268
Hsp92II	CATG	4 cut(s)	181, 477, 764, 908
HspAI	GCGC	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	1039
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	272, 994
Lsp1109I	GCAGC	5 cut(s)	521, 569, 712, 715, 716
LweI	GCATC	2 cut(s)	152, 1046
MaeI	CTAG	3 cut(s)	252, 534, 686
MaeII	ACGT	2 cut(s)	78, 268
MaeIII	GTNAC	2 cut(s)	327, 386
MalI	GATC	1 cut(s)	1041
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	1 cut(s)	1039
MboII	GAAGA	7 cut(s)	67, 302, 305, 482, 683, 710, 848
MfeI	CAATTG	2 cut(s)	371, 854
MluCI	AATT	6 cut(s)	9, 364, 371, 805, 854, 898
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	11, 91, 133, 136, 209, 535, 911, 1024
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	4 cut(s)	8, 428, 627, 1072
MspA1I	CMGCKG	1 cut(s)	707
MunI	CAATTG	2 cut(s)	371, 854
Mva1269I	GAATGC	1 cut(s)	502
MwoI	GCNNNNNNNGC	6 cut(s)	413, 506, 509, 682, 701, 1003
NdeII	GATC	1 cut(s)	1039
NlaIII	CATG	4 cut(s)	181, 477, 764, 908
NlaIV	GGNNCC	2 cut(s)	546, 996
NsiI	ATGCAT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	666
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	353, 487
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	7 cut(s)	415, 502, 511, 559, 706, 727, 730
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PshBI	ATTAAT	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	546, 996
PspPI	GGNCC	1 cut(s)	196
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	2 cut(s)	168, 752
RsaNI	GTAC	2 cut(s)	167, 751
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	8, 428, 627, 1072
SatI	GCNGC	7 cut(s)	414, 501, 510, 558, 705, 726, 729
Sau3AI	GATC	1 cut(s)	1039
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	152, 1046
SfcI	CTRYAG	1 cut(s)	642
Sse9I	AATT	6 cut(s)	9, 364, 371, 805, 854, 898
SsiI	CCGC	3 cut(s)	275, 414, 500
SspMI	CTAG	3 cut(s)	252, 534, 686
TaaI	ACNGT	2 cut(s)	750, 790
TaiI	ACGT	2 cut(s)	81, 271
TaqI	TCGA	1 cut(s)	40
TasI	AATT	6 cut(s)	9, 364, 371, 805, 854, 898
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	2 cut(s)	416, 503
TfiI	GAWTC	2 cut(s)	353, 487
Tru1I	TTAA	4 cut(s)	8, 428, 627, 1072
Tru9I	TTAA	4 cut(s)	8, 428, 627, 1072
TseI	GCWGC	5 cut(s)	509, 557, 704, 725, 728
TspDTI	ATGAA	2 cut(s)	500, 684
TspGWI	ACGGA	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	2 cut(s)	364, 898
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	3 cut(s)	252, 534, 686
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.