Rroxscaffold_1G00014130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018219
Physical Location & Seq
Reverse (-)
17472949 .. 17478744
5796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014130.1

Sequence Viewer

Length: 333 bp
ATGTCGGTGAGATGCGGATCCATGGCCTTCACGGTGTTAGTTAGGTTAGTTAGCGAACTAACGTGCCACGGCTCCCGACAGCATTATCGGATTGGAAATTCATCATTTTGCTCTAGCATTTGCTTCTGGTCTTATCTGCGGCAAGTCTTCCACTCTTCCAGGGGTATTCCAATTGTATCCTATCTCTCGCTAGTGCGCAGATCCGGCACCATCGAACATCGTCAATCTTGGTGGATCAACGGTCATAATTCGAGCGAGTTTCGTGACGGCGTCGAAGCGAAAGAAGAGAGAAAGGATGTTGACGGCTCTGTCCCTCGACCGTCGGCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.52

Weight (kDa)

9.43

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
Acc16I TGCGCA 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 15, 139
AclWI GGATC 4 cut(s) 12, 25, 195, 242
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 270
AjnI CCWGG 1 cut(s) 158
AlwI GGATC 4 cut(s) 12, 25, 195, 242
AoxI GGCC 2 cut(s) 24, 324
ApoI RAATTY 1 cut(s) 97
AspLEI GCGC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 19
BamHI GGATCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 139
BccI CCATC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 85, 283, 319
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 1 cut(s) 187
BfaI CTAG 2 cut(s) 114, 191
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 19, 73, 208
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 2
BpiI GAAGAC 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 21, 67, 159
Bse8I GATNNNNATC 1 cut(s) 16
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 21, 67, 159
BseGI GGATG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 2 cut(s) 26, 326
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 26, 326
Bsp143I GATC 3 cut(s) 17, 200, 234
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 15, 139
BspANI GGCC 2 cut(s) 26, 326
BspLI GGNNCC 3 cut(s) 19, 73, 208
BspPI GGATC 4 cut(s) 12, 25, 195, 242
BspT107I GGYRCC 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 21, 67, 159
BssMI GATC 3 cut(s) 17, 200, 234
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 34, 242, 321
Bst6I CTCTTC 2 cut(s) 160, 279
BstACI GRCGYC 1 cut(s) 270
BstDSI CCRYGG 2 cut(s) 21, 67
BstF5I GGATG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 3 cut(s) 20, 203, 237
BstMBI GATC 3 cut(s) 17, 200, 234
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 17, 200
BstYI RGATCY 2 cut(s) 17, 200
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 26, 326
BtgI CCRYGG 2 cut(s) 21, 67
BtsCI GGATG 1 cut(s) 301
CfoI GCGC 1 cut(s) 198
CseI GACGC 1 cut(s) 259
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviAII CATG 1 cut(s) 22
CviJI RGCY 4 cut(s) 26, 72, 306, 326
CviKI_1 RGCY 4 cut(s) 26, 72, 306, 326
DpnI GATC 3 cut(s) 19, 202, 236
DpnII GATC 3 cut(s) 17, 200, 234
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 160, 279
EarI CTCTTC 2 cut(s) 160, 279
Eco130I CCWWGG 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 246, 329, 331
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 114, 191
FspI TGCGCA 1 cut(s) 197
GlaI GCGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 26, 326
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 75, 263
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 275, 325
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 3 cut(s) 34, 242, 321
HpyCH4IV ACGT 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 3 cut(s) 17, 200, 234
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 4 cut(s) 112, 145, 172, 217
LweI GCATC 1 cut(s) 2
MaeI CTAG 2 cut(s) 114, 191
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 19, 202, 236
MboI GATC 3 cut(s) 17, 200, 234
MboII GAAGA 3 cut(s) 139, 147, 296
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 2 cut(s) 17, 200
MluCI AATT 3 cut(s) 97, 171, 247
MnlI CCTC 1 cut(s) 324
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 204
NcoI CCATGG 1 cut(s) 21
NdeII GATC 3 cut(s) 17, 200, 234
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 3 cut(s) 19, 73, 208
NmuCI GTSAC 1 cut(s) 263
NsbI TGCGCA 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 19, 73, 208
PsuI RGATCY 2 cut(s) 17, 200
PsyI GACNNNGTC 1 cut(s) 269
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 3 cut(s) 17, 200, 234
ScrFI CCNGG 1 cut(s) 160
SetI ASST 2 cut(s) 47, 65
SfaNI GCATC 1 cut(s) 2
Sse9I AATT 3 cut(s) 97, 171, 247
SsiI CCGC 2 cut(s) 15, 139
SspMI CTAG 2 cut(s) 114, 191
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 34, 242, 321
TaiI ACGT 1 cut(s) 65
TaqI TCGA 4 cut(s) 213, 251, 273, 316
TasI AATT 3 cut(s) 97, 171, 247
TauI GCSGC 1 cut(s) 142
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 90
Tth111I GACNNNGTC 1 cut(s) 269
XapI RAATTY 1 cut(s) 97
XspI CTAG 2 cut(s) 114, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.