Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018219

Physical Location & Seq

Genomic Coordinates Forward (+)

32351345 .. 32354005

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCGAAACAAGACAAATTTGCAATTGTTAGCTGGATGTTACTTGCATAGTAATCAAGCTTATGCCGCATACCATATTTTAAAGGGAACACAAGTGGCTCAATCACGCTACTTGTTTGCTATGTCATGCTATCAGATGAATCTTCTGAATGAGGCAGAAGCAGCATTATGCCCCCCTAATGAGCCTAGTGCAGAGGTTCCAAATGGCGCAGCAGGTCATTACCTTCTTGGGCTTATTTATAGGTATACTGATAGAAGGAAAAGTGCCATCCATCACTTTAAACAGGCTTTGACTATAGACCCTTCAATGTGGGCTGCGTATGAAGAGCTGTGCGTGCTAGGTTCTGCTGAAGAAGCAGCTGTGGTTTTTGGGGAAGCTGCTGCTCTCTCCATACAAAAACAGTACCTACATCATGGATTAGCTTCTCAAAGTTTACTCACCGTCAATGATGATTGCAATTTAGTTTCTGGAAGGAACTTTAGCTTTGAAGATGTTAGTCCAAGACAATTGAAACTAATGCAAGGCAGTAATACAAGAGATAGTTCTGGAAATTCTCATGTTATTTTAGGAGGAGTTTCTAGTCAGCCTACAAACGGCAGTTCTAACATATCTTTCTATAACACTCCTTCACCAATGCCTATGCAGGTCATCAGCCAATACTCAGGGTTTAGAAAGGATTGGAAGGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

231

Amino Acids

25.29

Weight (kDa)

6.7

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	3 - 57	1.8e-10	Anaphase-promoting complex, cyclosome, subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018219)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005656 RLG00000006020 RLG00000018533 RLG00000022775 RLG00000029073
rosa_multiflora	Rmu_sc0027398.1_g000001 Rmu_ssc0000114.1_g000064
rosa_roxburghii	Rroxscaffold_1G00014130
rosa_samantha	Rh5CG127000 Rh5DG079800 Rh5DG110500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	203, 634
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	16, 550
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	3 cut(s)	306, 488, 511
AluBI	AGCT	7 cut(s)	32, 59, 328, 359, 377, 422, 483
AluI	AGCT	7 cut(s)	32, 59, 328, 359, 377, 422, 483
ApeKI	GCWGC	6 cut(s)	161, 209, 314, 356, 377, 380
ApoI	RAATTY	2 cut(s)	16, 550
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	430, 621
BbvI	GCAGC	6 cut(s)	173, 221, 301, 364, 367, 368
BccI	CCATC	2 cut(s)	275, 279
BceAI	ACGGC	1 cut(s)	610
BfaI	CTAG	3 cut(s)	186, 338, 579
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	2 cut(s)	203, 634
BisI	GCNGC	7 cut(s)	66, 162, 210, 315, 357, 378, 381
BlsI	GCNGC	7 cut(s)	67, 163, 211, 316, 358, 379, 382
BmiI	GGNNCC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
BseGI	GGATG	2 cut(s)	41, 267
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMII	CTCAG	1 cut(s)	675
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	6 cut(s)	173, 221, 301, 364, 367, 368
BsgI	GTGCAG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	593
BspACI	CCGC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	674
BspLI	GGNNCC	1 cut(s)	198
BspMI	ACCTGC	2 cut(s)	203, 634
BspQI	GCTCTTC	1 cut(s)	318
BssNAI	GTATAC	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	402, 442
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	661
BstF5I	GGATG	2 cut(s)	41, 267
BstHHI	GCGC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 161, 334, 353
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	6 cut(s)	173, 221, 301, 364, 367, 368
BstZ17I	GTATAC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	41, 267
BveI	ACCTGC	2 cut(s)	203, 634
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	3 cut(s)	126, 413, 557
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	661
DraI	TTTAAA	2 cut(s)	81, 280
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	369
FaeI	CATG	3 cut(s)	129, 416, 560
FatI	CATG	3 cut(s)	125, 412, 556
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	7 cut(s)	66, 162, 210, 315, 357, 378, 381
FokI	GGATG	2 cut(s)	48, 254
Fsp4HI	GCNGC	7 cut(s)	66, 162, 210, 315, 357, 378, 381
FspBI	CTAG	3 cut(s)	186, 338, 579
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	7 cut(s)	66, 162, 210, 315, 357, 378, 381
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	129, 416, 560
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	2 cut(s)	430, 621
Hpy166II	GTNNAC	2 cut(s)	246, 434
Hpy188I	TCNGA	2 cut(s)	135, 147
Hpy188III	TCNNGA	2 cut(s)	468, 546
Hpy8I	GTNNAC	2 cut(s)	246, 434
HpyAV	CCTTC	7 cut(s)	233, 249, 312, 465, 636, 676, 680
HpyCH4III	ACNGT	2 cut(s)	402, 442
HpyCH4V	TGCA	6 cut(s)	22, 46, 191, 456, 520, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 161, 334, 353
HpyF3I	CTNAG	1 cut(s)	661
Hsp92II	CATG	3 cut(s)	129, 416, 560
HspAI	GCGC	1 cut(s)	207
LguI	GCTCTTC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	18, 198, 269, 453, 531, 629, 648
Lsp1109I	GCAGC	6 cut(s)	173, 221, 301, 364, 367, 368
MaeI	CTAG	3 cut(s)	186, 338, 579
MaeIII	GTNAC	1 cut(s)	38
MboII	GAAGA	4 cut(s)	134, 335, 362, 500
MfeI	CAATTG	2 cut(s)	23, 506
MluCI	AATT	5 cut(s)	16, 23, 457, 506, 550
MnlI	CCTC	3 cut(s)	145, 187, 563
MseI	TTAA	2 cut(s)	80, 279
MspA1I	CMGCKG	1 cut(s)	359
MunI	CAATTG	2 cut(s)	23, 506
MwoI	GCNNNNNNNGC	4 cut(s)	65, 161, 334, 353
NlaIII	CATG	3 cut(s)	129, 416, 560
NlaIV	GGNNCC	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	7 cut(s)	67, 163, 211, 316, 358, 379, 382
PspN4I	GGNNCC	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	80, 279
SatI	GCNGC	7 cut(s)	66, 162, 210, 315, 357, 378, 381
SfcI	CTRYAG	1 cut(s)	294
Sse9I	AATT	5 cut(s)	16, 23, 457, 506, 550
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	3 cut(s)	186, 338, 579
TaaI	ACNGT	2 cut(s)	402, 442
TasI	AATT	5 cut(s)	16, 23, 457, 506, 550
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	80, 279
Tru9I	TTAA	2 cut(s)	80, 279
TseI	GCWGC	6 cut(s)	161, 209, 314, 356, 377, 380
TspDTI	ATGAA	2 cut(s)	152, 336
XapI	RAATTY	2 cut(s)	16, 550
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	3 cut(s)	186, 338, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.