RLG00000022937

Exopolygalacturonase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
15449881 .. 15451329
1449 bp
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UTR
Exon/CDS
Intron
RLM00000022937

Sequence Viewer

Length: 1449 bp
ATGGGTCTGAAATTGATGAACATCTTGGCAATACTTTTGCTCTCATTGTTAGCATCCACCGCTGTAGCTCATCAATCAAATGTCTTCGATGTGACAAGCTCAAAATATGGTGGAAAGCCCAACTCGGATATTTCAAAGGCATTGACAATGGCGTGGACAGATGCCTGTGCATCAATGTCGATGAGTACTGTCCTTGTTCCGAAGGGAACATATGAGCTATTACAACAAGCAACAGTTGAAGGTCCTTGCAAGGCACCAATTCAGTTTCAGCTCCAAGGAACATTGCAGGCTCCAAAAGACCGCAGCCAACTCGATGACTCTTGGGTTCAGTTTAGGAACATCGACATGCTCACCTTGTCCGGCGGTGGAACTTTTGACGGACAAGGAGCGCTTTCTTGGAAGGAGCACCATGACTCTACTCCCGTCGATATTAAGTTCAAAACCGTCAGCAATTCCATAATTAGCGACATAACTTTCATGGACAGTGCAAAGTTCCACATTTGTGTTCATGACTCCAACAACGTTACATTCCAACGGGTCACCATCACAGCACCCGAAGATAGTCCTAACACCGACGGAATCCACATCTCCAGTTCGGCCAAGATCACAGTCTCCGACTCCTACATTGCAACAGGTGACGATTGTGTTTCAATTGGCGATGGTTCCAACCAAATCGTAGTGTCCAACATTAATTGCGGACCAGGTCATGGAATAAGCATAGGCAGTCTAGGAAAGTACCCGGACGAACAGCCGGTGGTCGGTATCACGGTCAAAAACTGCACGCTTACCGGCACAACCAACGGCGCGAGAATCAAGACATGGCCCGATTCTCCGGGAACAAGCGTTGCTTCGGACATACTCTTCCAAGACATGATCATGGTCAATGTGAAGAACCCTATCGTCATCGACCAGAACTACTGCGACAAGGGCAAGTCATGTAAGTTAAAGATTCCATCCAAAGTCCAGATCACTGATGTGAGTTTCAAGAATATCAGGGGCTCGTCTTCATCTCCGGTGGCCGTCAAGCTCGACTGTAGTCACAGCGCACCGTGTCGGAATGTGGAGCTGTCTGATATTGATCTCACGTACAGTGGAGACGAAAAAGACAAAATTACATCCGAGTGTAATAATGTCATGCCGAGAATTACTGGCGTGACTGAGGCTCTTGCTTGTGCCAATCTAGGTGACATACCGCGGGTGGTAGACACACCTCCCCTTCCGCCGGTGGTGGACACACCTCCTCTTCCTCCTCCCCCTACGGTACCATCAGATGATTCGTCTCCACCGATAGTAATGGTATATGGGTATCCATATCCTCTGCCTCGTACTGATGGTGGTTTTGGACCAACATTCTCCGCCGGCGGCACTATTTTGGGGCAAAACCCGACAGTCAGAGTGATGGTGCTTAGTTCAGCCCTGGCCTTCTGGTTGTTGCACGGCTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

51.29

Weight (kDa)

5.25

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 56 - 379 1.1e-95 Glycosyl hydrolases family 28
Beta_helix PF13229 147 - 268 1.1e-06 Right handed beta helix region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1261
AccB1I GGYRCC 2 cut(s) 253, 1261
AccB7I CCANNNNNTGG 1 cut(s) 707
AccI GTMKAC 1 cut(s) 1203
AccII CGCG 2 cut(s) 806, 1195
AciI CCGC 9 cut(s) 60, 301, 363, 696, 1193, 1195, 1220, 1356, 1362
AclI AACGTT 1 cut(s) 522
AcoI YGGCCR 2 cut(s) 597, 1017
AfaI GTAC 5 cut(s) 187, 737, 1088, 1263, 1327
AfeI AGCGCT 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 707, 758, 1222
AgsI TTSAA 5 cut(s) 135, 239, 439, 651, 985
AjnI CCWGG 2 cut(s) 700, 1416
AleI CACNNNNGTG 2 cut(s) 501, 974
AluBI AGCT 6 cut(s) 68, 99, 217, 271, 1027, 1066
AluI AGCT 6 cut(s) 68, 99, 217, 271, 1027, 1066
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 616, 1089, 1284
Aor51HI AGCGCT 1 cut(s) 390
AoxI GGCC 4 cut(s) 597, 821, 1017, 1419
ApeKI GCWGC 1 cut(s) 303
AseI ATTAAT 1 cut(s) 690
Asp718I GGTACC 1 cut(s) 1261
AspLEI GCGC 3 cut(s) 391, 806, 1046
AspS9I GGNCC 4 cut(s) 242, 698, 822, 1343
AsuC2I CCSGG 2 cut(s) 740, 834
AsuHPI GGTGA 4 cut(s) 343, 532, 647, 1196
AvaII GGWCC 3 cut(s) 242, 698, 1343
BanI GGYRCC 2 cut(s) 253, 1261
BanII GRGCYC 1 cut(s) 1001
BbsI GAAGAC 2 cut(s) 76, 996
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 315
BccI CCATC 6 cut(s) 551, 653, 961, 1273, 1325, 1393
BceAI ACGGC 2 cut(s) 817, 1004
BcgI CGANNNNNNTGC 4 cut(s) 159, 193, 292, 326
BciT130I CCWGG 2 cut(s) 702, 1418
BciVI GTATCC 1 cut(s) 1317
BclI TGATCA 1 cut(s) 873
BcnI CCSGG 2 cut(s) 740, 834
BcoDI GTCTC 3 cut(s) 616, 1089, 1284
BfaI CTAG 2 cut(s) 728, 1181
BfmI CTRYAG 2 cut(s) 63, 1033
BfoI RGCGCY 1 cut(s) 392
BfuI GTATCC 1 cut(s) 1317
BisI GCNGC 2 cut(s) 304, 1363
BlsI GCNGC 2 cut(s) 305, 1364
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 4 cut(s) 702, 740, 834, 1418
Bme18I GGWCC 3 cut(s) 242, 698, 1343
BmgT120I GGNCC 4 cut(s) 242, 698, 822, 1343
BmiI GGNNCC 4 cut(s) 255, 291, 664, 1263
BmrFI CCNGG 4 cut(s) 702, 740, 834, 1418
BmsI GCATC 3 cut(s) 62, 151, 179
BoxI GACNNNNGTC 1 cut(s) 1035
BpiI GAAGAC 2 cut(s) 76, 996
BpmI CTGGAG 1 cut(s) 574
BpuMI CCSGG 2 cut(s) 740, 834
BsaAI YACGTR 1 cut(s) 1086
BsaBI GATNNNNATC 2 cut(s) 20, 1077
BsaJI CCNNGG 3 cut(s) 274, 1193, 1416
BsaWI WCCGGW 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 3 cut(s) 707, 758, 1222
Bse118I RCCGGY 4 cut(s) 751, 788, 1222, 1358
Bse1I ACTGG 2 cut(s) 591, 1153
Bse3DI GCAATG 2 cut(s) 281, 624
Bse8I GATNNNNATC 2 cut(s) 20, 1077
BseBI CCWGG 2 cut(s) 702, 1418
BseDI CCNNGG 3 cut(s) 274, 1193, 1416
BseGI GGATG 3 cut(s) 53, 953, 1115
BseJI GATNNNNATC 2 cut(s) 20, 1077
BseLI CCNNNNNNNGG 3 cut(s) 707, 758, 1222
BseMI GCAATG 2 cut(s) 281, 624
BseMII CTCAG 1 cut(s) 1149
BseNI ACTGG 2 cut(s) 591, 1153
BseRI GAGGAG 2 cut(s) 1230, 1239
BseXI GCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 763
Bsh1236I CGCG 2 cut(s) 806, 1195
BshFI GGCC 4 cut(s) 599, 823, 1019, 1421
BshNI GGYRCC 2 cut(s) 253, 1261
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 8 cut(s) 360, 740, 752, 789, 833, 1013, 1223, 1359
BslI CCNNNNNNNGG 3 cut(s) 707, 758, 1222
BsmAI GTCTC 3 cut(s) 616, 1089, 1284
BsmBI CGTCTC 2 cut(s) 1089, 1284
BsnI GGCC 4 cut(s) 599, 823, 1019, 1421
Bsp1286I GDGCHC 2 cut(s) 408, 1001
Bsp143I GATC 4 cut(s) 603, 873, 966, 1078
BspACI CCGC 9 cut(s) 60, 301, 363, 696, 1193, 1195, 1220, 1356, 1362
BspANI GGCC 4 cut(s) 599, 823, 1019, 1421
BspCNI CTCAG 1 cut(s) 1150
BspFNI CGCG 2 cut(s) 806, 1195
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 4 cut(s) 255, 291, 664, 1263
BspT107I GGYRCC 2 cut(s) 253, 1261
BsrDI GCAATG 2 cut(s) 281, 624
BsrFI RCCGGY 4 cut(s) 751, 788, 1222, 1358
BsrI ACTGG 2 cut(s) 591, 1153
BssAI RCCGGY 4 cut(s) 751, 788, 1222, 1358
BssECI CCNNGG 3 cut(s) 274, 1193, 1416
BssMI GATC 4 cut(s) 603, 873, 966, 1078
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 702, 1418
Bst6I CTCTTC 2 cut(s) 866, 1248
BstBAI YACGTR 1 cut(s) 1086
BstC8I GCNNGC 3 cut(s) 288, 782, 1360
BstDEI CTNAG 2 cut(s) 1158, 1406
BstDSI CCRYGG 1 cut(s) 1193
BstEII GGTNACC 1 cut(s) 538
BstF5I GGATG 3 cut(s) 53, 953, 1115
BstFNI CGCG 2 cut(s) 806, 1195
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 3 cut(s) 391, 806, 1046
BstKTI GATC 4 cut(s) 606, 876, 969, 1081
BstMAI GTCTC 3 cut(s) 616, 1089, 1284
BstMBI GATC 4 cut(s) 603, 873, 966, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 59, 927
BstNI CCWGG 2 cut(s) 702, 1418
BstNSI RCATGY 1 cut(s) 349
BstPAI GACNNNNGTC 1 cut(s) 1035
BstPI GGTNACC 1 cut(s) 538
BstSCI CCNGG 4 cut(s) 700, 738, 832, 1416
BstSFI CTRYAG 2 cut(s) 63, 1033
BstUI CGCG 2 cut(s) 806, 1195
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 2 cut(s) 76, 996
BsuI GTATCC 1 cut(s) 1317
BsuRI GGCC 4 cut(s) 599, 823, 1019, 1421
BtgI CCRYGG 1 cut(s) 1193
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 3 cut(s) 53, 953, 1115
BtsIMutI CAGTG 3 cut(s) 490, 969, 1096
Cac8I GCNNGC 3 cut(s) 288, 782, 1360
CciI TCATGA 1 cut(s) 508
CfoI GCGC 3 cut(s) 391, 806, 1046
Cfr10I RCCGGY 4 cut(s) 751, 788, 1222, 1358
Cfr13I GGNCC 4 cut(s) 242, 698, 822, 1343
Cfr42I CCGCGG 1 cut(s) 1196
CsiI ACCWGGT 1 cut(s) 700
Csp6I GTAC 5 cut(s) 186, 736, 1087, 1262, 1326
CviQI GTAC 5 cut(s) 186, 736, 1087, 1262, 1326
DdeI CTNAG 2 cut(s) 1158, 1406
DpnI GATC 4 cut(s) 605, 875, 968, 1080
DpnII GATC 4 cut(s) 603, 873, 966, 1078
EaeI YGGCCR 2 cut(s) 597, 1017
Eam1104I CTCTTC 2 cut(s) 866, 1248
EarI CTCTTC 2 cut(s) 866, 1248
EciI GGCGGA 2 cut(s) 1209, 1345
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 1001
Eco47I GGWCC 3 cut(s) 242, 698, 1343
Eco47III AGCGCT 1 cut(s) 390
Eco91I GGTNACC 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 700, 1416
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 1001
ErhI CCWWGG 1 cut(s) 274
Esp3I CGTCTC 2 cut(s) 1089, 1284
FalI AAGNNNNNCTT 4 cut(s) 375, 407, 832, 864
FauI CCCGC 1 cut(s) 1188
FauNDI CATATG 1 cut(s) 211
FbaI TGATCA 1 cut(s) 873
FblI GTMKAC 1 cut(s) 1203
Fnu4HI GCNGC 2 cut(s) 304, 1363
FokI GGATG 3 cut(s) 40, 940, 1102
FriOI GRGCYC 1 cut(s) 1001
Fsp4HI GCNGC 2 cut(s) 304, 1363
FspBI CTAG 2 cut(s) 728, 1181
GlaI GCGC 3 cut(s) 390, 805, 1045
GluI GCNGC 2 cut(s) 304, 1363
GsuI CTGGAG 1 cut(s) 574
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 599, 823, 1019, 1421
HapII CCGG 8 cut(s) 360, 740, 752, 789, 833, 1013, 1223, 1359
HhaI GCGC 3 cut(s) 391, 806, 1046
Hin6I GCGC 3 cut(s) 389, 804, 1044
HinP1I GCGC 3 cut(s) 389, 804, 1044
HinfI GANTC 9 cut(s) 317, 413, 512, 579, 617, 810, 827, 949, 1274
HpaII CCGG 8 cut(s) 360, 740, 752, 789, 833, 1013, 1223, 1359
HphI GGTGA 4 cut(s) 343, 532, 647, 1196
Hpy166II GTNNAC 3 cut(s) 156, 1204, 1231
Hpy188III TCNNGA 4 cut(s) 509, 814, 964, 985
Hpy8I GTNNAC 3 cut(s) 156, 1204, 1231
Hpy99I CGWCG 2 cut(s) 428, 578
HpyAV CCTTC 5 cut(s) 196, 233, 394, 1226, 1432
HpyCH4IV ACGT 2 cut(s) 522, 1085
HpyCH4V TGCA 7 cut(s) 170, 249, 286, 488, 629, 780, 1435
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 927
HpyF3I CTNAG 2 cut(s) 1158, 1406
HpySE526I ACGT 2 cut(s) 522, 1085
HspAI GCGC 3 cut(s) 389, 804, 1044
KpnI GGTACC 1 cut(s) 1265
KroI GCCGGC 1 cut(s) 1358
KroNI GCCGGC 1 cut(s) 1360
Ksp22I TGATCA 1 cut(s) 873
KspI CCGCGG 1 cut(s) 1196
Kzo9I GATC 4 cut(s) 603, 873, 966, 1078
LmnI GCTCC 5 cut(s) 276, 295, 386, 403, 1063
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 3 cut(s) 62, 151, 179
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 2 cut(s) 728, 1181
MaeII ACGT 2 cut(s) 522, 1085
MaeIII GTNAC 7 cut(s) 91, 523, 538, 635, 1037, 1153, 1184
MalI GATC 4 cut(s) 605, 875, 968, 1080
MboI GATC 4 cut(s) 603, 873, 966, 1078
MboII GAAGA 6 cut(s) 76, 569, 853, 901, 996, 1235
MfeI CAATTG 1 cut(s) 651
MhlI GDGCHC 2 cut(s) 408, 1001
MluCI AATT 8 cut(s) 11, 258, 451, 459, 651, 691, 1110, 1143
MlyI GAGTC 4 cut(s) 311, 407, 506, 611
MmeI TCCRAC 6 cut(s) 540, 556, 639, 690, 708, 1034
MnlI CCTC 8 cut(s) 1153, 1221, 1248, 1251, 1257, 1260, 1326, 1332
MreI CGCCGGCG 1 cut(s) 1358
MroNI GCCGGC 1 cut(s) 1358
MseI TTAA 3 cut(s) 432, 690, 944
MslI CAYNNNNRTG 5 cut(s) 344, 501, 875, 974, 1120
MspA1I CMGCKG 2 cut(s) 62, 1195
MspI CCGG 8 cut(s) 360, 740, 752, 789, 833, 1013, 1223, 1359
MspR9I CCNGG 4 cut(s) 702, 740, 834, 1418
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 2 cut(s) 702, 1418
MvnI CGCG 2 cut(s) 806, 1195
MwoI GCNNNNNNNGC 2 cut(s) 59, 927
NaeI GCCGGC 1 cut(s) 1360
NciI CCSGG 2 cut(s) 740, 834
NdeI CATATG 1 cut(s) 211
NdeII GATC 4 cut(s) 603, 873, 966, 1078
NgoMIV GCCGGC 1 cut(s) 1358
NlaIV GGNNCC 4 cut(s) 255, 291, 664, 1263
NmeAIII GCCGAG 1 cut(s) 1164
NmuCI GTSAC 6 cut(s) 91, 538, 635, 1037, 1153, 1184
NspI RCATGY 1 cut(s) 349
OliI CACNNNNGTG 2 cut(s) 501, 974
PagI TCATGA 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 1283
PdiI GCCGGC 1 cut(s) 1360
PfeI GAWTC 5 cut(s) 579, 810, 827, 949, 1274
PflFI GACNNNGTC 1 cut(s) 702
PflMI CCANNNNNTGG 1 cut(s) 707
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 2 cut(s) 305, 1364
PleI GAGTC 4 cut(s) 311, 407, 506, 611
PpsI GAGTC 4 cut(s) 311, 407, 506, 611
Ppu21I YACGTR 1 cut(s) 1086
PpuMI RGGWCCY 1 cut(s) 242
PshAI GACNNNNGTC 1 cut(s) 1035
PshBI ATTAAT 1 cut(s) 690
Psp1406I AACGTT 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 700, 1416
PspEI GGTNACC 1 cut(s) 538
PspGI CCWGG 2 cut(s) 700, 1416
PspN4I GGNNCC 4 cut(s) 255, 291, 664, 1263
PspPI GGNCC 4 cut(s) 242, 698, 822, 1343
PspPPI RGGWCCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 702
RsaI GTAC 5 cut(s) 187, 737, 1088, 1263, 1327
RsaNI GTAC 5 cut(s) 186, 736, 1087, 1262, 1326
RseI CAYNNNNRTG 5 cut(s) 344, 501, 875, 974, 1120
SacII CCGCGG 1 cut(s) 1196
SaqAI TTAA 3 cut(s) 432, 690, 944
SatI GCNGC 2 cut(s) 304, 1363
Sau3AI GATC 4 cut(s) 603, 873, 966, 1078
Sau96I GGNCC 4 cut(s) 242, 698, 822, 1343
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 4 cut(s) 311, 407, 506, 611
ScrFI CCNGG 4 cut(s) 702, 740, 834, 1418
SduI GDGCHC 2 cut(s) 408, 1001
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 3 cut(s) 62, 151, 179
SfcI CTRYAG 2 cut(s) 63, 1033
Sfr303I CCGCGG 1 cut(s) 1196
SgrAI CRCCGGYG 2 cut(s) 1222, 1358
SgrBI CCGCGG 1 cut(s) 1196
SinI GGWCC 3 cut(s) 242, 698, 1343
SmiMI CAYNNNNRTG 5 cut(s) 344, 501, 875, 974, 1120
Sse9I AATT 8 cut(s) 11, 258, 451, 459, 651, 691, 1110, 1143
SsiI CCGC 9 cut(s) 60, 301, 363, 696, 1193, 1195, 1220, 1356, 1362
SspMI CTAG 2 cut(s) 728, 1181
StyD4I CCNGG 4 cut(s) 700, 738, 832, 1416
StyI CCWWGG 1 cut(s) 274
TaiI ACGT 2 cut(s) 525, 1088
TaqI TCGA 7 cut(s) 87, 179, 312, 342, 426, 906, 1029
TasI AATT 8 cut(s) 11, 258, 451, 459, 651, 691, 1110, 1143
TatI WGTACW 1 cut(s) 185
TauI GCSGC 1 cut(s) 1365
TfiI GAWTC 5 cut(s) 579, 810, 827, 949, 1274
Tru1I TTAA 3 cut(s) 432, 690, 944
Tru9I TTAA 3 cut(s) 432, 690, 944
TscAI CASTG 3 cut(s) 490, 976, 1096
TseFI GTSAC 6 cut(s) 91, 538, 635, 1037, 1153, 1184
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 6 cut(s) 91, 538, 635, 1037, 1153, 1184
TspDTI ATGAA 4 cut(s) 32, 466, 497, 996
TspGWI ACGGA 2 cut(s) 393, 591
TspRI CASTG 3 cut(s) 490, 976, 1096
Tth111I GACNNNGTC 1 cut(s) 702
Van91I CCANNNNNTGG 1 cut(s) 707
VpaK11BI GGWCC 3 cut(s) 242, 698, 1343
VspI ATTAAT 1 cut(s) 690
XceI RCATGY 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 1203
XspI CTAG 2 cut(s) 728, 1181
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.