Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001354.1

Orthogroup ID

OG0011526

Physical Location & Seq

Genomic Coordinates Reverse (-)

117278 .. 118420

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001354.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgggtctgaaatcgatgaacattttggcaatacttttgctctcatttttagcatccaccgctgtagctgatcaatccaatgtcttcgatgtgacaagctcaaaatatggtggaaagcccaactcggatatttcaaaggcattgacaatggcatggacagatgcgtgtgcatcaacgtcaacgagtactgtccttgttccgaggggaacatgcaagtttttacaagcaaaatttgaaggtccttgcaaggctcctattcagtttcagctccaaggaacattgcaggctccgaaagaccggagccaattcgatgactcttggatttcctttaacaacatcgacatgctcaccttgtccggcggtggaactatcgacagacaaggagccctttcttggaaggagaatcatgactctactcccgttgatatttggttccaatctgtcaacaattccacaattagcgacatagcttcaatcgacagcgcaaagttccacattagtgttcatggctgcaacaacgttacgttccaacggctcaccatcacagcacccgaagacagtcctaacaccgacggaatccacatctctagttcgaccaagatcacagtctccgactcctacattgcaaccggtgacgattgtgtttcaattggcgatggctccaaccaaatcctagtgtccaacattacttgcggaccaggtcatggaataagcataggcagtctaggaaagtatccagacgaacagccggtggtcggcgtcacggtcaagaactgcacgcttaccggcacaagcaacggcgcgagaatcaagacatggcccgattctccggcaacaagcgttgcttgtaatatactcttccaagacatggtcatggtgaatgtgaagaaccctatccttatcgaccagaactactgtgacaaaggcaagtcgtgtaagcaaataattccatccaaagtccagatcagtaacgtgacgttcaaggatatcaggggctcgtcttcgtctccggttgcagtcaagctcgactgtagtcacagcgcgccgtgccggaatgtggagctgtccgatattgatctcacgtacagtggagacaaaaaagacgaaatcacgtctgagtgtaataatgtcaaacctgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

380

Amino Acids

40.61

Weight (kDa)

5.51

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24670
rosa_chinensis	RchiOBHm_Chr6g0292511 RchiOBHm_Chr7g0185321
rosa_laevigata	RLG00000004922 RLG00000012018 RLG00000022937
rosa_multiflora	Rmu_sc0001354.1_g000029 Rmu_sc0008496.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269040 Rroxscaffold_7G00175000
rosa_rugosa	Rorug06G0227300 Rorug06G0468000
rosa_samantha	Rh3DG321700 Rh6AG340500 Rh6DG340600 Rh7BG072500 Rh7CG073600
rosa_wichuraiana	Rw3G025550 Rw6G029650 Rw7G006070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	704, 868
AccII	CGCG	2 cut(s)	803, 1043
AciI	CCGC	3 cut(s)	60, 360, 693
AclI	AACGTT	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	759
AfaI	GTAC	2 cut(s)	187, 1085
AfiI	CCNNNNNNNGG	5 cut(s)	393, 704, 755, 868, 1057
AgeI	ACCGGT	1 cut(s)	629
AgsI	TTSAA	5 cut(s)	135, 236, 474, 648, 982
AjiI	CACGTC	1 cut(s)	1113
AjnI	CCWGG	1 cut(s)	697
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	6 cut(s)	68, 99, 268, 470, 1024, 1063
AluI	AGCT	6 cut(s)	68, 99, 268, 470, 1024, 1063
Alw26I	GTCTC	3 cut(s)	613, 1011, 1086
AoxI	GGCC	1 cut(s)	818
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	230
AsiGI	ACCGGT	1 cut(s)	629
AspLEI	GCGC	4 cut(s)	485, 803, 1043, 1045
AspS9I	GGNCC	3 cut(s)	239, 695, 819
AsuHPI	GGTGA	4 cut(s)	340, 529, 644, 889
AvaII	GGWCC	2 cut(s)	239, 695
BanII	GRGCYC	2 cut(s)	388, 998
BbsI	GAAGAC	3 cut(s)	76, 561, 993
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	3 cut(s)	548, 650, 958
BceAI	ACGGC	3 cut(s)	548, 814, 1030
BciT130I	CCWGG	1 cut(s)	699
BciVI	GTATCC	1 cut(s)	744
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	613, 1011, 1086
BfaI	CTAG	3 cut(s)	588, 674, 725
BfmI	CTRYAG	2 cut(s)	63, 1030
BfuI	GTATCC	1 cut(s)	744
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	699
Bme18I	GGWCC	2 cut(s)	239, 695
BmgBI	CACGTC	1 cut(s)	1113
BmgT120I	GGNCC	3 cut(s)	239, 695, 819
BmiI	GGNNCC	6 cut(s)	252, 288, 302, 385, 434, 661
BmrFI	CCNGG	1 cut(s)	699
BmsI	GCATC	3 cut(s)	62, 151, 179
BoxI	GACNNNNGTC	1 cut(s)	1032
BpiI	GAAGAC	3 cut(s)	76, 561, 993
Bsa29I	ATCGAT	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	1083
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaHI	GRCGYC	1 cut(s)	759
BsaJI	CCNNGG	2 cut(s)	200, 271
BsaWI	WCCGGW	3 cut(s)	297, 629, 1009
Bsc4I	CCNNNNNNNGG	5 cut(s)	393, 704, 755, 868, 1057
Bse118I	RCCGGY	3 cut(s)	629, 748, 785
Bse3DI	GCAATG	2 cut(s)	278, 621
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	1 cut(s)	699
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	200, 271
BseGI	GGATG	2 cut(s)	53, 950
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	5 cut(s)	393, 704, 755, 868, 1057
BseMI	GCAATG	2 cut(s)	278, 621
BseMII	CTCAG	1 cut(s)	1107
BsePI	GCGCGC	1 cut(s)	1041
BseXI	GCAGC	1 cut(s)	497
BsgI	GTGCAG	1 cut(s)	760
Bsh1236I	CGCG	2 cut(s)	803, 1043
BshFI	GGCC	1 cut(s)	820
BshTI	ACCGGT	1 cut(s)	629
BshVI	ATCGAT	1 cut(s)	14
BsiSI	CCGG	8 cut(s)	298, 357, 630, 749, 786, 830, 1010, 1051
BslI	CCNNNNNNNGG	5 cut(s)	393, 704, 755, 868, 1057
BsmAI	GTCTC	3 cut(s)	613, 1011, 1086
BsmBI	CGTCTC	1 cut(s)	1011
BsnI	GGCC	1 cut(s)	820
Bsp1286I	GDGCHC	2 cut(s)	388, 998
Bsp143I	GATC	4 cut(s)	70, 600, 963, 1075
BspACI	CCGC	3 cut(s)	60, 360, 693
BspANI	GGCC	1 cut(s)	820
BspCNI	CTCAG	1 cut(s)	1108
BspDI	ATCGAT	1 cut(s)	14
BspFNI	CGCG	2 cut(s)	803, 1043
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	6 cut(s)	252, 288, 302, 385, 434, 661
BsrDI	GCAATG	2 cut(s)	278, 621
BsrFI	RCCGGY	3 cut(s)	629, 748, 785
BssAI	RCCGGY	3 cut(s)	629, 748, 785
BssECI	CCNNGG	2 cut(s)	200, 271
BssHII	GCGCGC	1 cut(s)	1041
BssMI	GATC	4 cut(s)	70, 600, 963, 1075
BssNI	GRCGYC	1 cut(s)	759
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	7 cut(s)	190, 560, 607, 766, 917, 1031, 1088
Bst6I	CTCTTC	1 cut(s)	863
BstACI	GRCGYC	1 cut(s)	759
BstBAI	YACGTR	1 cut(s)	1083
BstC8I	GCNNGC	3 cut(s)	285, 779, 1043
BstDEI	CTNAG	1 cut(s)	1116
BstF5I	GGATG	2 cut(s)	53, 950
BstFNI	CGCG	2 cut(s)	803, 1043
BstHHI	GCGC	4 cut(s)	485, 803, 1043, 1045
BstKTI	GATC	4 cut(s)	73, 603, 966, 1078
BstMAI	GTCTC	3 cut(s)	613, 1011, 1086
BstMBI	GATC	4 cut(s)	70, 600, 963, 1075
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 1047
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	2 cut(s)	213, 346
BstPAI	GACNNNNGTC	1 cut(s)	1032
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	2 cut(s)	63, 1030
BstUI	CGCG	2 cut(s)	803, 1043
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	3 cut(s)	76, 561, 993
Bsu15I	ATCGAT	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	744
BsuRI	GGCC	1 cut(s)	820
BsuTUI	ATCGAT	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	1113
BtsCI	GGATG	2 cut(s)	53, 950
BtsIMutI	CAGTG	1 cut(s)	1093
Cac8I	GCNNGC	3 cut(s)	285, 779, 1043
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	4 cut(s)	485, 803, 1043, 1045
Cfr10I	RCCGGY	3 cut(s)	629, 748, 785
Cfr13I	GGNCC	3 cut(s)	239, 695, 819
ClaI	ATCGAT	1 cut(s)	14
CseI	GACGC	1 cut(s)	748
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	186, 1084
CspAI	ACCGGT	1 cut(s)	629
CviAII	CATG	9 cut(s)	153, 210, 343, 407, 506, 704, 816, 868, 874
CviQI	GTAC	2 cut(s)	186, 1084
DdeI	CTNAG	1 cut(s)	1116
DpnI	GATC	4 cut(s)	72, 602, 965, 1077
DpnII	GATC	4 cut(s)	70, 600, 963, 1075
Eam1104I	CTCTTC	1 cut(s)	863
EarI	CTCTTC	1 cut(s)	863
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	388, 998
Eco32I	GATATC	1 cut(s)	988
Eco47I	GGWCC	2 cut(s)	239, 695
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	697
EcoRV	GATATC	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	388, 998
ErhI	CCWWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	1011
FaeI	CATG	9 cut(s)	156, 213, 346, 410, 509, 707, 819, 871, 877
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 829, 861
FatI	CATG	9 cut(s)	152, 209, 342, 406, 505, 703, 815, 867, 873
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	2 cut(s)	40, 937
FriOI	GRGCYC	2 cut(s)	388, 998
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	3 cut(s)	588, 674, 725
GlaI	GCGC	4 cut(s)	484, 802, 1042, 1044
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	820
HapII	CCGG	8 cut(s)	298, 357, 630, 749, 786, 830, 1010, 1051
HgaI	GACGC	1 cut(s)	748
HhaI	GCGC	4 cut(s)	485, 803, 1043, 1045
Hin1I	GRCGYC	1 cut(s)	759
Hin1II	CATG	9 cut(s)	156, 213, 346, 410, 509, 707, 819, 871, 877
Hin6I	GCGC	4 cut(s)	483, 801, 1041, 1043
HinP1I	GCGC	4 cut(s)	483, 801, 1041, 1043
HincII	GTYRAC	2 cut(s)	180, 445
HindII	GTYRAC	2 cut(s)	180, 445
HinfI	GANTC	7 cut(s)	314, 403, 410, 576, 614, 807, 824
HpaII	CCGG	8 cut(s)	298, 357, 630, 749, 786, 830, 1010, 1051
HphI	GGTGA	4 cut(s)	340, 529, 644, 889
Hpy166II	GTNNAC	2 cut(s)	180, 445
Hpy188I	TCNGA	7 cut(s)	9, 127, 201, 291, 613, 1069, 1117
Hpy188III	TCNNGA	5 cut(s)	407, 737, 769, 811, 961
Hpy8I	GTNNAC	2 cut(s)	180, 445
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	2 cut(s)	230, 391
HpyCH4III	ACNGT	7 cut(s)	190, 560, 607, 766, 917, 1031, 1088
HpyCH4IV	ACGT	7 cut(s)	176, 519, 524, 972, 977, 1082, 1112
HpyCH4V	TGCA	8 cut(s)	170, 213, 246, 283, 513, 626, 777, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 1047
HpyF3I	CTNAG	1 cut(s)	1116
HpySE526I	ACGT	7 cut(s)	176, 519, 524, 972, 977, 1082, 1112
Hsp92I	GRCGYC	1 cut(s)	759
Hsp92II	CATG	9 cut(s)	156, 213, 346, 410, 509, 707, 819, 871, 877
HspAI	GCGC	4 cut(s)	483, 801, 1041, 1043
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	70, 600, 963, 1075
LmnI	GCTCC	7 cut(s)	256, 273, 292, 300, 383, 665, 1060
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	3 cut(s)	62, 151, 179
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	3 cut(s)	588, 674, 725
MaeII	ACGT	7 cut(s)	176, 519, 524, 972, 977, 1082, 1112
MaeIII	GTNAC	8 cut(s)	91, 520, 632, 760, 917, 968, 973, 1034
MalI	GATC	4 cut(s)	72, 602, 965, 1077
MboI	GATC	4 cut(s)	70, 600, 963, 1075
MboII	GAAGA	5 cut(s)	76, 566, 850, 898, 993
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	2 cut(s)	388, 998
MluCI	AATT	6 cut(s)	230, 305, 448, 456, 648, 945
MlyI	GAGTC	3 cut(s)	308, 404, 608
MmeI	TCCRAC	4 cut(s)	553, 636, 687, 705
MnlI	CCTC	1 cut(s)	195
MseI	TTAA	2 cut(s)	330, 1141
MslI	CAYNNNNRTG	3 cut(s)	341, 498, 872
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	8 cut(s)	298, 357, 630, 749, 786, 830, 1010, 1051
MspR9I	CCNGG	1 cut(s)	699
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	2 cut(s)	803, 1043
MwoI	GCNNNNNNNGC	2 cut(s)	59, 1047
NdeII	GATC	4 cut(s)	70, 600, 963, 1075
NlaIII	CATG	9 cut(s)	156, 213, 346, 410, 509, 707, 819, 871, 877
NlaIV	GGNNCC	6 cut(s)	252, 288, 302, 385, 434, 661
NmuCI	GTSAC	6 cut(s)	91, 632, 760, 917, 973, 1034
NspI	RCATGY	2 cut(s)	213, 346
OliI	CACNNNNGTG	1 cut(s)	498
PagI	TCATGA	1 cut(s)	406
PauI	GCGCGC	1 cut(s)	1041
PfeI	GAWTC	4 cut(s)	403, 576, 807, 824
PflFI	GACNNNGTC	2 cut(s)	699, 869
PflMI	CCANNNNNTGG	2 cut(s)	704, 868
PinAI	ACCGGT	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	3 cut(s)	308, 404, 608
PpsI	GAGTC	3 cut(s)	308, 404, 608
Ppu21I	YACGTR	1 cut(s)	1083
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	1032
Psp1406I	AACGTT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	6 cut(s)	252, 288, 302, 385, 434, 661
PspPI	GGNCC	3 cut(s)	239, 695, 819
PspPPI	RGGWCCY	1 cut(s)	239
PsyI	GACNNNGTC	2 cut(s)	699, 869
PteI	GCGCGC	1 cut(s)	1041
RsaI	GTAC	2 cut(s)	187, 1085
RsaNI	GTAC	2 cut(s)	186, 1084
RseI	CAYNNNNRTG	3 cut(s)	341, 498, 872
SaqAI	TTAA	2 cut(s)	330, 1141
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	4 cut(s)	70, 600, 963, 1075
Sau96I	GGNCC	3 cut(s)	239, 695, 819
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	3 cut(s)	308, 404, 608
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	2 cut(s)	388, 998
SexAI	ACCWGGT	1 cut(s)	697
SfaNI	GCATC	3 cut(s)	62, 151, 179
SfcI	CTRYAG	2 cut(s)	63, 1030
SinI	GGWCC	2 cut(s)	239, 695
SmiMI	CAYNNNNRTG	3 cut(s)	341, 498, 872
Sse9I	AATT	6 cut(s)	230, 305, 448, 456, 648, 945
SsiI	CCGC	3 cut(s)	60, 360, 693
SspMI	CTAG	3 cut(s)	588, 674, 725
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	7 cut(s)	190, 560, 607, 766, 917, 1031, 1088
TaiI	ACGT	7 cut(s)	179, 522, 527, 975, 980, 1085, 1115
TaqI	TCGA	9 cut(s)	14, 87, 309, 339, 372, 477, 593, 903, 1026
TasI	AATT	6 cut(s)	230, 305, 448, 456, 648, 945
TatI	WGTACW	1 cut(s)	185
TfiI	GAWTC	4 cut(s)	403, 576, 807, 824
Tru1I	TTAA	2 cut(s)	330, 1141
Tru9I	TTAA	2 cut(s)	330, 1141
TscAI	CASTG	1 cut(s)	1093
TseFI	GTSAC	6 cut(s)	91, 632, 760, 917, 973, 1034
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	6 cut(s)	91, 632, 760, 917, 973, 1034
TspDTI	ATGAA	2 cut(s)	32, 494
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	1093
Tth111I	GACNNNGTC	2 cut(s)	699, 869
Van91I	CCANNNNNTGG	2 cut(s)	704, 868
VpaK11BI	GGWCC	2 cut(s)	239, 695
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	2 cut(s)	213, 346
XspI	CTAG	3 cut(s)	588, 674, 725
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.