RLG00000024950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010632
Physical Location & Seq
Forward (+)
40674199 .. 40680375
6177 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024950

Sequence Viewer

Length: 558 bp
ATGGCATCGGATATCAGGCACAGAAGAGGAAAAAGATTGTTGGAACAAAATGATAGTGAAGATTTCAACCGTGATGCAGAGATAGAAACAAGAAACAATAGTGAGAATTTTTATACCATGAGAGCCCAAACTGATACTGGGGGTTTTGGTACAGAGGCAATGCATCAAAGAAGATCAAGAAGGCCAAGACGTGTTCCTGAACCTGCAATAACAGAGAAAAATTACACCTCTGAACACTTGAATAGAATATCAAGAAGGCGAAGACGTGTTGCTGAACCTGTAATAACAGAGATAAATGACACCTCTGAACACTTGAATATAAGAGTTCAACCTGCTGAACAAAACAACAGTCTGTCATTGGATCAAACTTCTGTTAACAGTGAAGATGCGCATGTTGGTCATACAGTACAAGAGCCTCAGCAAATTGATTACTGGCTCTCCCAAGGAGAGAGATCCCAAGTTTTGCGCTCCTCTTATAAGGATAGAGAAACTGATCTTCGCTCATCAATGACAATTAGAAGCTTCCCAATCCCAACTGGTAAATGGTCTGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.61

Weight (kDa)

7.04

Isoelectric Point (pI)

87.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
Acc16I TGCGCA 1 cut(s) 390
Acc36I ACCTGC 2 cut(s) 211, 340
AclWI GGATC 2 cut(s) 369, 447
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 2 cut(s) 151, 408
AflIII ACRYGT 2 cut(s) 190, 265
AgsI TTSAA 4 cut(s) 67, 241, 316, 329
AjiI CACGTC 2 cut(s) 191, 266
AluBI AGCT 1 cut(s) 522
AluI AGCT 1 cut(s) 522
AlwI GGATC 2 cut(s) 369, 447
AoxI GGCC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 106
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspLEI GCGC 2 cut(s) 391, 468
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 417
BfuAI ACCTGC 2 cut(s) 211, 340
BmgBI CACGTC 2 cut(s) 191, 266
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 4 cut(s) 14, 64, 172, 376
BmuI ACTGGG 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bse1I ACTGG 3 cut(s) 142, 437, 541
Bse3DI GCAATG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 3 cut(s) 142, 437, 541
BseRI GAGGAG 1 cut(s) 460
BshFI GGCC 1 cut(s) 184
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 4 cut(s) 173, 361, 452, 493
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 430
BspMI ACCTGC 2 cut(s) 211, 340
BspPI GGATC 2 cut(s) 369, 447
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 3 cut(s) 142, 437, 541
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 4 cut(s) 173, 361, 452, 493
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 4 cut(s) 71, 350, 380, 406
Bst6I CTCTTC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 417, 555
BstHHI GCGC 2 cut(s) 391, 468
BstKTI GATC 4 cut(s) 176, 364, 455, 496
BstMBI GATC 4 cut(s) 173, 361, 452, 493
BstNSI RCATGY 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 1 cut(s) 184
BtrI CACGTC 2 cut(s) 191, 266
BtsIMutI CAGTG 1 cut(s) 385
BveI ACCTGC 2 cut(s) 211, 340
CfoI GCGC 2 cut(s) 391, 468
Csp6I GTAC 2 cut(s) 150, 407
CviAII CATG 2 cut(s) 118, 392
CviJI RGCY 5 cut(s) 125, 184, 415, 436, 522
CviKI_1 RGCY 5 cut(s) 125, 184, 415, 436, 522
CviQI GTAC 2 cut(s) 150, 407
DdeI CTNAG 2 cut(s) 417, 555
DpnI GATC 4 cut(s) 175, 363, 454, 495
DpnII GATC 4 cut(s) 173, 361, 452, 493
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 13
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 2 cut(s) 121, 395
FaiI YATR 6 cut(s) 114, 119, 320, 393, 402, 477
FatI CATG 2 cut(s) 117, 391
FriOI GRGCYC 1 cut(s) 127
FspAI RTGCGCAY 1 cut(s) 390
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 2 cut(s) 390, 467
HaeIII GGCC 1 cut(s) 184
HhaI GCGC 2 cut(s) 391, 468
Hin1II CATG 2 cut(s) 121, 395
Hin6I GCGC 2 cut(s) 389, 466
HinP1I GCGC 2 cut(s) 389, 466
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 520
HpaI GTTAAC 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 4 cut(s) 10, 232, 307, 550
Hpy188III TCNNGA 3 cut(s) 177, 197, 252
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 174, 249
HpyCH4III ACNGT 4 cut(s) 71, 350, 380, 406
HpyCH4IV ACGT 2 cut(s) 190, 265
HpyCH4V TGCA 3 cut(s) 77, 163, 206
HpyF3I CTNAG 2 cut(s) 417, 555
HpySE526I ACGT 2 cut(s) 190, 265
Hsp92II CATG 2 cut(s) 121, 395
HspAI GCGC 2 cut(s) 389, 466
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 4 cut(s) 173, 361, 452, 493
LmnI GCTCC 1 cut(s) 473
LpnPI CCDG 7 cut(s) 123, 210, 216, 291, 345, 418, 522
LweI GCATC 4 cut(s) 14, 64, 172, 376
MaeII ACGT 2 cut(s) 190, 265
MalI GATC 4 cut(s) 175, 363, 454, 495
MboI GATC 4 cut(s) 173, 361, 452, 493
MboII GAAGA 6 cut(s) 36, 71, 183, 273, 395, 488
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 4 cut(s) 106, 220, 423, 513
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 6 cut(s) 20, 148, 238, 313, 426, 481
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 1 cut(s) 375
NdeII GATC 4 cut(s) 173, 361, 452, 493
NlaIII CATG 2 cut(s) 121, 395
NsbI TGCGCA 1 cut(s) 390
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 1 cut(s) 395
PsiI TTATAA 1 cut(s) 477
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 2 cut(s) 151, 408
RsaNI GTAC 2 cut(s) 150, 407
SaqAI TTAA 1 cut(s) 375
Sau3AI GATC 4 cut(s) 173, 361, 452, 493
SduI GDGCHC 1 cut(s) 127
SetI ASST 8 cut(s) 193, 205, 230, 268, 280, 305, 334, 524
SfaNI GCATC 4 cut(s) 14, 64, 172, 376
Sse9I AATT 4 cut(s) 106, 220, 423, 513
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 4 cut(s) 71, 350, 380, 406
TaiI ACGT 2 cut(s) 193, 268
TasI AATT 4 cut(s) 106, 220, 423, 513
TatI WGTACW 1 cut(s) 406
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 385
TspRI CASTG 1 cut(s) 385
XapI RAATTY 1 cut(s) 106
XceI RCATGY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 2 cut(s) 134, 540
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.