Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010632

Physical Location & Seq

Genomic Coordinates Forward (+)

15017741 .. 15044773

Gene Structure 27033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGGTGATAATCTGCGGAGCTGGTTTAGCGGTGACATTTTGGGAGCTGTGTGATTCTGTTAAGCAAGTGAAGGACCAGATACTGATGTTCAAACCCCAACTCGGGGATATCAAGTCCACTCTCGACTCTTTGCAGCCACTGATCAAGGAGATGGCAGAGTGTGAGAAGGAACTGGATGGTCCAGAGGAGGAACTAGAGAATCTTAGAGTGGAAATGGAGGAAGGAGTGGAGCTTATTCGCAAGTGCTCGGAAGCGAGCAGATTCAAGAAGTATAAGTATGGCAGCAGACTTGTTGAATTGAGCAAGTCACTTCAGAGGCTGTTGGGGATATTGAAAGTGCAGGGCATAAGGGATATGAAGAAGGCATTGGTTTCGGTGAGGAACGTTGAGAATGTGGTGCACAGAATTGAAGGGAGTTGTGTGAAACAGAACAATCAGTCTGAAAAAGTTGAAGGGTGGTGTGCTGTGCCTGAGACTCCAACAATTACGGTTGGATTGGATTTGCCTTTGAGGGAATTGAAGATGAAGCTCTTTAAAGACGGAGTGTCGATGGTGATACTTACTGCTCCAGGTGGATGTGGGAAAACTACACTGGCAACAAAATTGTGTCATGATGCAGAAGTAAAAGATAAATTCAAAAGCAATGTCTTCTTTGTTACTGTTTCAAAGAAGCCCAACTTGTACCTAATTGTAAAAGAGCTATATCATCGAACGGGTGCCCAGGTCCCCAATTTCCAAAGTGAAGGAACTGCAGTTAGCTGGCTGCAGCAATTTCTGAAGCAAACAGGACAAAATCCTATGTTGTTGGTCCTGGATGATGTTTGGGCTGGATCAGAATTCATTCTTGAGAAGTTCGATGAATTAAAAATGACAAATTACAAGATATTGGTGACATCAAGGTCTGCTTTTCCAAGATTTGGTTCTCCATATTATTTGGAATGTTTGAACCGCGAAGATGCAATGGCACTTTTTCACCATGCAGCATCCTTAGGTGATAGGAGCTCTTATATTTCAGAAGATCTTCCGAGAAAGATAGTAGAACGTTGTATGGGATATCCACTTGCAATTACAGTTGTCGGAAGATCACTTTGCCGGCAGCCAATAGAGATTTGGCAAAAAAGAGTGTTGGAATGGTCTAGAGGTTCTTCTGTTCTTGAGTCTGAACATGATTTGCTTGATTGCCTCCAAAGAAGCTTAGATGCTTTGGATGAAGAGAAGTCTCTCATCAGGGAATGCTTCAAAGACCTTGGTTTATTTCCTGAAGATAAAAGAATCTCAGCTACTGTCCTCATTGATATGTGGGCAGAGGTATATGGCATAAATGAGGACATTTCGTCCATTGTGAACCTCTATGAACTTGCCTCTCGGAGTTTGGCTAATCTGGTAGTCACAAGGAATGACAAGGATGGCGATGGCTATTACACTGAACACTTTGTTACACAGCATGACATGCTTAGGGAGTTGGCTATCCAACAGATTAGTCGGGAACCACTACAACAGAGAATGAGACTTATGATTGACATAAGTGGAGACAACTTTCCTATGTGGTGGAAAGAACAAAAGTATCAATCCCTCATAGCTCGCTTTGTATCTATCTCAACAGACGAAGAGTTCTCATCTAAATGGCAAAACTTGCCACTGCCGAAAGCTGAGGTTCTGGTTTTGAATTTTCAGACAAAGAACTATGCCTTTCCCAAATTCAGGAAGATGTCGAAGTCGTTGAAGGTTCTAATAGTCACAAATTATGGTGTCATGCCAGCTGAAGTGAGTAACTTTACATCATTGGGTTCCTTATCTGAGCTGAAGAGGATAAGATTAGAGCGCATTTCAGTTCCTTCCATTACCAAGAACTCCATACAGTTGAATAGTCTACAAAAGATATCTTTATTCATGTGTAACATCGGGCTAGCTTTTAGCAACGGTTCCTTCAAATTTTTCAAGGCATTCCCAAGCCTTAAAGAAATCAACATTGACTATTGCAGTGATATGGTGGTATTGCCTGCTGACATCTGTCTTCTAATCCATCTAAAGACGCTCAGTATCACCAACTGTCATAAGCTATCTACCTTGCCTGCAATGATTGGAGAGCTAGTCAATTTAGAAGTTTTGAGGTTAAGGTCCTGCACAGCCTTGTCAGATTTGCCAAGTTCAGTTAGGAAACTCGAAAAACTAAAGGTTCTTGACATATCCAATTGCTACAGCATTAAGGAGTTGCCTGAACACATTGGCGAAATGTGCTGCTTAGAAAAGCTCAACATGAGGCAGTGCTCGAGATTGCAAGAGCTGCCTGAATCAATTTTGGATCTTCAAACGTTAACTGATGTGATATGTGATGGGGATACAAAAGGGTTATGGGAACCTTACTTGCCCCGTCTCAGCAACCACATAAAGATAAGGGTGGTCGAAGAGGAAATCAACCTAGATTGGCTTCAAATGGTTCGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

815

Amino Acids

92.96

Weight (kDa)

6.39

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	3 - 130	6.7e-24	Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC	PF00931	170 - 326	3.6e-16	NB-ARC domain
AAA_22	PF13401	183 - 279	9.4e-07	AAA domain
LRR_14	PF23598	646 - 731	3.7e-10	Leucine-rich repeat region
LRR_14	PF23598	724 - 782	3.2e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010632)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000024950
rosa_roxburghii	Rroxscaffold_3G00266600 Rroxscaffold_7G00204960
rosa_rugosa	Rorug01G0063400 Rorug01G0139500.1 Rorug01G0139900.1 Rorug02G0167400 Rorug05G0092000 Rorug06G0396400
rosa_samantha	Rh1AG316400 Rh2BG022500 Rh4CG269800 Rh4CG293500 Rh5DG263100 Rh6BG293200 Rh6DG138300 Rh7BG053800 Rh7BG379300 Rh7CG247400 Rh7DG403400
rosa_wichuraiana	Rw1G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	898
AccB1I	GGYRCC	1 cut(s)	716
AccB7I	CCANNNNNTGG	1 cut(s)	917
AccI	GTMKAC	1 cut(s)	1870
AccII	CGCG	1 cut(s)	951
AciI	CCGC	3 cut(s)	15, 29, 949
AclI	AACGTT	3 cut(s)	384, 1042, 2312
AclWI	GGATC	2 cut(s)	838, 2310
AcsI	RAATTY	5 cut(s)	632, 836, 1666, 1697, 1931
AcuI	CTGAAG	5 cut(s)	296, 797, 1281, 1782, 1823
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	5 cut(s)	101, 102, 103, 917, 1701
AhdI	GACNNNNNGTC	2 cut(s)	544, 1333
AjnI	CCWGG	3 cut(s)	568, 720, 810
AjuI	GAANNNNNNNTTGG	4 cut(s)	350, 382, 904, 936
Alw21I	GWGCWC	4 cut(s)	248, 402, 1004, 2270
Alw26I	GTCTC	5 cut(s)	467, 1224, 1501, 1524, 2378
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	838, 2310
AlwNI	CAGNNNCTG	4 cut(s)	82, 139, 319, 1283
Ama87I	CYCGRG	2 cut(s)	101, 2269
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	8 cut(s)	133, 282, 763, 766, 980, 1096, 2238, 2284
ApoI	RAATTY	5 cut(s)	632, 836, 1666, 1697, 1931
ArsI	GACNNNNNNTTYG	2 cut(s)	630, 662
Asp700I	GAANNNNTTC	2 cut(s)	840, 1020
AspLEI	GCGC	1 cut(s)	1824
AspS9I	GGNCC	5 cut(s)	73, 179, 724, 808, 2118
AsuHPI	GGTGA	8 cut(s)	16, 43, 388, 565, 901, 965, 1004, 2035
AsuNHI	GCTAGC	1 cut(s)	1906
AvaI	CYCGRG	2 cut(s)	101, 2269
AvaII	GGWCC	5 cut(s)	73, 179, 724, 808, 2118
AxyI	CCTNAGG	1 cut(s)	988
BaeGI	GKGCMC	2 cut(s)	402, 721
BaeI	ACNNNNGTAYC	4 cut(s)	71, 104, 1547, 1580
BanI	GGYRCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	1004
BbsI	GAAGAC	2 cut(s)	640, 2006
Bbv12I	GWGCWC	4 cut(s)	248, 402, 1004, 2270
BbvCI	CCTCAGC	1 cut(s)	1650
BbvI	GCAGC	8 cut(s)	145, 294, 750, 778, 992, 1108, 2225, 2271
BccI	CCATC	7 cut(s)	145, 170, 544, 1400, 1406, 2031, 2327
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BciT130I	CCWGG	3 cut(s)	570, 722, 812
BciVI	GTATCC	1 cut(s)	2332
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	5 cut(s)	467, 1224, 1501, 1524, 2378
BfaI	CTAG	5 cut(s)	194, 1137, 1907, 2090, 2420
BfmI	CTRYAG	3 cut(s)	750, 764, 2197
BfuI	GTATCC	1 cut(s)	2332
BglII	AGATCT	1 cut(s)	1018
BisI	GCNGC	8 cut(s)	134, 283, 764, 767, 981, 1097, 2239, 2285
BlsI	GCNGC	8 cut(s)	135, 284, 765, 768, 982, 1098, 2240, 2286
Bme1390I	CCNGG	3 cut(s)	570, 722, 812
Bme18I	GGWCC	5 cut(s)	73, 179, 724, 808, 2118
BmeRI	GACNNNNNGTC	2 cut(s)	544, 1333
BmeT110I	CYCGRG	2 cut(s)	101, 2269
BmgT120I	GGNCC	5 cut(s)	73, 179, 724, 808, 2118
BmiI	GGNNCC	6 cut(s)	718, 726, 1488, 1789, 1924, 2358
BmrFI	CCNGG	3 cut(s)	570, 722, 812
BmsI	GCATC	4 cut(s)	604, 946, 992, 1189
BmtI	GCTAGC	1 cut(s)	1910
BoxI	GACNNNNGTC	1 cut(s)	2010
BpiI	GAAGAC	2 cut(s)	640, 2006
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	2 cut(s)	1454, 1650
BpuEI	CTTGAG	2 cut(s)	866, 1175
BsaJI	CCNNGG	2 cut(s)	720, 1246
BsaXI	ACNNNNNCTCC	2 cut(s)	2076, 2106
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 102, 103, 917, 1701
Bse118I	RCCGGY	1 cut(s)	1092
Bse1I	ACTGG	2 cut(s)	177, 597
Bse21I	CCTNAGG	1 cut(s)	988
Bse3DI	GCAATG	3 cut(s)	649, 966, 2082
BseBI	CCWGG	3 cut(s)	570, 722, 812
BseDI	CCNNGG	2 cut(s)	720, 1246
BseGI	GGATG	6 cut(s)	181, 581, 820, 983, 1213, 1411
BseLI	CCNNNNNNNGG	5 cut(s)	101, 102, 103, 917, 1701
BseMI	GCAATG	3 cut(s)	649, 966, 2082
BseMII	CTCAG	6 cut(s)	462, 1290, 1641, 1788, 2050, 2389
BseNI	ACTGG	2 cut(s)	177, 597
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	402, 721
BseXI	GCAGC	8 cut(s)	145, 294, 750, 778, 992, 1108, 2225, 2271
BsgI	GTGCAG	2 cut(s)	359, 2107
Bsh1236I	CGCG	1 cut(s)	951
BshNI	GGYRCC	1 cut(s)	716
BsiHKAI	GWGCWC	4 cut(s)	248, 402, 1004, 2270
BsiHKCI	CYCGRG	2 cut(s)	101, 2269
BsiSI	CCGG	1 cut(s)	1093
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	5 cut(s)	101, 102, 103, 917, 1701
BsmAI	GTCTC	5 cut(s)	467, 1224, 1501, 1524, 2378
BsmBI	CGTCTC	1 cut(s)	2378
BsmFI	GGGAC	1 cut(s)	710
BsmI	GAATGC	2 cut(s)	1238, 1943
BsoBI	CYCGRG	2 cut(s)	101, 2269
Bsp1286I	GDGCHC	5 cut(s)	248, 402, 721, 1004, 2270
Bsp143I	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
BspACI	CCGC	3 cut(s)	15, 29, 949
BspCNI	CTCAG	6 cut(s)	463, 1289, 1642, 1789, 2049, 2388
BspFNI	CGCG	1 cut(s)	951
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	6 cut(s)	718, 726, 1488, 1789, 1924, 2358
BspMAI	CTGCAG	2 cut(s)	754, 768
BspOI	GCTAGC	1 cut(s)	1910
BspPI	GGATC	2 cut(s)	838, 2310
BspT107I	GGYRCC	1 cut(s)	716
BsrDI	GCAATG	3 cut(s)	649, 966, 2082
BsrFI	RCCGGY	1 cut(s)	1092
BsrI	ACTGG	2 cut(s)	177, 597
BssAI	RCCGGY	1 cut(s)	1092
BssECI	CCNNGG	2 cut(s)	720, 1246
BssMI	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
BssT1I	CCWWGG	1 cut(s)	1246
Bst2UI	CCWGG	3 cut(s)	570, 722, 812
Bst4CI	ACNGT	7 cut(s)	490, 661, 1072, 1285, 1860, 1922, 2051
Bst6I	CTCTTC	4 cut(s)	1206, 1602, 1799, 2400
BstAPI	GCANNNNNTGC	3 cut(s)	1450, 1633, 2284
BstC8I	GCNNGC	8 cut(s)	256, 761, 1094, 1582, 1758, 1908, 2001, 2073
BstF5I	GGATG	6 cut(s)	181, 581, 820, 983, 1213, 1411
BstFNI	CGCG	1 cut(s)	951
BstHHI	GCGC	1 cut(s)	1824
BstKTI	GATC	5 cut(s)	144, 833, 1021, 1085, 2305
BstMAI	GTCTC	5 cut(s)	467, 1224, 1501, 1524, 2378
BstMBI	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 1450, 1633, 2235, 2284
BstNI	CCWGG	3 cut(s)	570, 722, 812
BstNSI	RCATGY	1 cut(s)	1453
BstPAI	GACNNNNGTC	1 cut(s)	2010
BstSCI	CCNGG	3 cut(s)	568, 720, 810
BstSFI	CTRYAG	3 cut(s)	750, 764, 2197
BstSLI	GKGCMC	2 cut(s)	402, 721
BstUI	CGCG	1 cut(s)	951
BstV1I	GCAGC	8 cut(s)	145, 294, 750, 778, 992, 1108, 2225, 2271
BstV2I	GAAGAC	2 cut(s)	640, 2006
BstX2I	RGATCY	2 cut(s)	1018, 2302
BstYI	RGATCY	2 cut(s)	1018, 2302
Bsu36I	CCTNAGG	1 cut(s)	988
BsuI	GTATCC	1 cut(s)	2332
BtgZI	GCGATG	1 cut(s)	1425
BtsCI	GGATG	6 cut(s)	181, 581, 820, 983, 1213, 1411
BtsI	GCAGTG	3 cut(s)	1637, 1987, 2270
BtsIMutI	CAGTG	6 cut(s)	137, 590, 1422, 1637, 1987, 2270
Cac8I	GCNNGC	8 cut(s)	256, 761, 1094, 1582, 1758, 1908, 2001, 2073
CaiI	CAGNNNCTG	4 cut(s)	82, 139, 319, 1283
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	1 cut(s)	1824
Cfr10I	RCCGGY	1 cut(s)	1092
Cfr13I	GGNCC	5 cut(s)	73, 179, 724, 808, 2118
CseI	GACGC	1 cut(s)	2041
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	8 cut(s)	611, 977, 1166, 1445, 1450, 1753, 1891, 2257
CviQI	GTAC	1 cut(s)	682
DpnI	GATC	5 cut(s)	143, 832, 1020, 1084, 2304
DpnII	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
DraI	TTTAAA	1 cut(s)	535
DrdI	GACNNNNNNGTC	1 cut(s)	898
DriI	GACNNNNNGTC	2 cut(s)	544, 1333
DseDI	GACNNNNNNGTC	1 cut(s)	898
Eam1104I	CTCTTC	4 cut(s)	1206, 1602, 1799, 2400
Eam1105I	GACNNNNNGTC	2 cut(s)	544, 1333
EarI	CTCTTC	4 cut(s)	1206, 1602, 1799, 2400
Ecl136II	GAGCTC	1 cut(s)	1002
Eco130I	CCWWGG	1 cut(s)	1246
Eco24I	GRGCYC	1 cut(s)	1004
Eco32I	GATATC	3 cut(s)	109, 1055, 1881
Eco47I	GGWCC	5 cut(s)	73, 179, 724, 808, 2118
Eco53kI	GAGCTC	1 cut(s)	1002
Eco57I	CTGAAG	5 cut(s)	296, 797, 1281, 1782, 1823
Eco81I	CCTNAGG	1 cut(s)	988
Eco88I	CYCGRG	2 cut(s)	101, 2269
EcoICRI	GAGCTC	1 cut(s)	1002
EcoO109I	RGGNCCY	2 cut(s)	724, 2118
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	3 cut(s)	568, 720, 810
EcoRV	GATATC	3 cut(s)	109, 1055, 1881
EcoT14I	CCWWGG	1 cut(s)	1246
EcoT38I	GRGCYC	1 cut(s)	1004
ErhI	CCWWGG	1 cut(s)	1246
Esp3I	CGTCTC	1 cut(s)	2378
FaeI	CATG	8 cut(s)	614, 980, 1169, 1448, 1453, 1756, 1894, 2260
FalI	AAGNNNNNCTT	4 cut(s)	662, 694, 889, 921
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	8 cut(s)	610, 976, 1165, 1444, 1449, 1752, 1890, 2256
FbaI	TGATCA	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	1870
Fnu4HI	GCNGC	8 cut(s)	134, 283, 764, 767, 981, 1097, 2239, 2285
FokI	GGATG	6 cut(s)	188, 588, 827, 970, 1220, 1418
FriOI	GRGCYC	1 cut(s)	1004
Fsp4HI	GCNGC	8 cut(s)	134, 283, 764, 767, 981, 1097, 2239, 2285
FspBI	CTAG	5 cut(s)	194, 1137, 1907, 2090, 2420
GlaI	GCGC	1 cut(s)	1823
GluI	GCNGC	8 cut(s)	134, 283, 764, 767, 981, 1097, 2239, 2285
GsuI	CTGGAG	1 cut(s)	552
HapII	CCGG	1 cut(s)	1093
HgaI	GACGC	1 cut(s)	2041
HhaI	GCGC	1 cut(s)	1824
Hin1II	CATG	8 cut(s)	614, 980, 1169, 1448, 1453, 1756, 1894, 2260
Hin6I	GCGC	1 cut(s)	1822
HinP1I	GCGC	1 cut(s)	1822
HincII	GTYRAC	1 cut(s)	2316
HindII	GTYRAC	1 cut(s)	2316
HindIII	AAGCTT	1 cut(s)	1192
HinfI	GANTC	8 cut(s)	53, 125, 199, 261, 475, 1157, 1272, 2291
HpaI	GTTAAC	1 cut(s)	2316
HpaII	CCGG	1 cut(s)	1093
HphI	GGTGA	8 cut(s)	16, 43, 388, 565, 901, 965, 1004, 2035
Hpy166II	GTNNAC	5 cut(s)	117, 400, 1345, 1871, 2316
Hpy8I	GTNNAC	5 cut(s)	117, 400, 1345, 1871, 2316
HpyCH4III	ACNGT	7 cut(s)	490, 661, 1072, 1285, 1860, 1922, 2051
HpyCH4IV	ACGT	3 cut(s)	384, 1042, 2312
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 1450, 1633, 2235, 2284
HpySE526I	ACGT	3 cut(s)	384, 1042, 2312
Hsp92II	CATG	8 cut(s)	614, 980, 1169, 1448, 1453, 1756, 1894, 2260
HspAI	GCGC	1 cut(s)	1822
KroI	GCCGGC	1 cut(s)	1092
KroNI	GCCGGC	1 cut(s)	1094
Ksp22I	TGATCA	1 cut(s)	141
KspAI	GTTAAC	1 cut(s)	2316
Kzo9I	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
LmnI	GCTCC	5 cut(s)	17, 43, 229, 571, 999
Lsp1109I	GCAGC	8 cut(s)	145, 294, 750, 778, 992, 1108, 2225, 2271
LweI	GCATC	4 cut(s)	604, 946, 992, 1189
MaeI	CTAG	5 cut(s)	194, 1137, 1907, 2090, 2420
MaeII	ACGT	3 cut(s)	384, 1042, 2312
MaeIII	GTNAC	9 cut(s)	31, 306, 655, 889, 1387, 1435, 1735, 1769, 1895
MalI	GATC	5 cut(s)	143, 832, 1020, 1084, 2304
MboI	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
MfeI	CAATTG	1 cut(s)	2191
MflI	RGATCY	2 cut(s)	1018, 2302
MhlI	GDGCHC	5 cut(s)	248, 402, 721, 1004, 2270
MlyI	GAGTC	3 cut(s)	119, 469, 1166
MmeI	TCCRAC	5 cut(s)	472, 503, 1057, 1107, 1495
MroNI	GCCGGC	1 cut(s)	1092
MroXI	GAANNNNTTC	2 cut(s)	840, 1020
MseI	TTAA	7 cut(s)	60, 534, 863, 1956, 2114, 2205, 2315
MslI	CAYNNNNRTG	2 cut(s)	1295, 1621
MspA1I	CMGCKG	1 cut(s)	1760
MspI	CCGG	1 cut(s)	1093
MspR9I	CCNGG	3 cut(s)	570, 722, 812
MunI	CAATTG	1 cut(s)	2191
Mva1269I	GAATGC	2 cut(s)	1238, 1943
MvaI	CCWGG	3 cut(s)	570, 722, 812
MvnI	CGCG	1 cut(s)	951
MwoI	GCNNNNNNNGC	5 cut(s)	26, 1450, 1633, 2235, 2284
NaeI	GCCGGC	1 cut(s)	1094
NdeII	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
NgoMIV	GCCGGC	1 cut(s)	1092
NheI	GCTAGC	1 cut(s)	1906
NlaIII	CATG	8 cut(s)	614, 980, 1169, 1448, 1453, 1756, 1894, 2260
NlaIV	GGNNCC	6 cut(s)	718, 726, 1488, 1789, 1924, 2358
NmuCI	GTSAC	5 cut(s)	31, 306, 889, 1387, 1735
NspI	RCATGY	1 cut(s)	1453
PaeR7I	CTCGAG	1 cut(s)	2269
PagI	TCATGA	1 cut(s)	610
PctI	GAATGC	2 cut(s)	1238, 1943
PdiI	GCCGGC	1 cut(s)	1094
PdmI	GAANNNNTTC	2 cut(s)	840, 1020
PfeI	GAWTC	5 cut(s)	53, 199, 261, 1272, 2291
PflMI	CCANNNNNTGG	1 cut(s)	917
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	8 cut(s)	135, 284, 765, 768, 982, 1098, 2240, 2286
PleI	GAGTC	3 cut(s)	119, 469, 1165
PpsI	GAGTC	3 cut(s)	119, 469, 1165
PpuMI	RGGWCCY	2 cut(s)	724, 2118
PshAI	GACNNNNGTC	1 cut(s)	2010
Psp124BI	GAGCTC	1 cut(s)	1004
Psp1406I	AACGTT	3 cut(s)	384, 1042, 2312
Psp5II	RGGWCCY	2 cut(s)	724, 2118
Psp6I	CCWGG	3 cut(s)	568, 720, 810
PspGI	CCWGG	3 cut(s)	568, 720, 810
PspN4I	GGNNCC	6 cut(s)	718, 726, 1488, 1789, 1924, 2358
PspPI	GGNCC	5 cut(s)	73, 179, 724, 808, 2118
PspPPI	RGGWCCY	2 cut(s)	724, 2118
PstI	CTGCAG	2 cut(s)	754, 768
PstNI	CAGNNNCTG	4 cut(s)	82, 139, 319, 1283
PsuI	RGATCY	2 cut(s)	1018, 2302
PvuII	CAGCTG	1 cut(s)	1760
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	2 cut(s)	1295, 1621
SacI	GAGCTC	1 cut(s)	1004
SaqAI	TTAA	7 cut(s)	60, 534, 863, 1956, 2114, 2205, 2315
SatI	GCNGC	8 cut(s)	134, 283, 764, 767, 981, 1097, 2239, 2285
Sau3AI	GATC	5 cut(s)	141, 830, 1018, 1082, 2302
Sau96I	GGNCC	5 cut(s)	73, 179, 724, 808, 2118
SchI	GAGTC	3 cut(s)	119, 469, 1166
ScrFI	CCNGG	3 cut(s)	570, 722, 812
SduI	GDGCHC	5 cut(s)	248, 402, 721, 1004, 2270
SfaNI	GCATC	4 cut(s)	604, 946, 992, 1189
SfcI	CTRYAG	3 cut(s)	750, 764, 2197
Sfr274I	CTCGAG	1 cut(s)	2269
SinI	GGWCC	5 cut(s)	73, 179, 724, 808, 2118
SlaI	CTCGAG	1 cut(s)	2269
SmiMI	CAYNNNNRTG	2 cut(s)	1295, 1621
SmlI	CTYRAG	3 cut(s)	845, 1154, 2269
SmoI	CTYRAG	3 cut(s)	845, 1154, 2269
SsiI	CCGC	3 cut(s)	15, 29, 949
SspMI	CTAG	5 cut(s)	194, 1137, 1907, 2090, 2420
SstI	GAGCTC	1 cut(s)	1004
StyD4I	CCNGG	3 cut(s)	568, 720, 810
StyI	CCWWGG	1 cut(s)	1246
TaaI	ACNGT	7 cut(s)	490, 661, 1072, 1285, 1860, 1922, 2051
TaiI	ACGT	3 cut(s)	387, 1045, 2315
TaqI	TCGA	8 cut(s)	123, 548, 709, 855, 1712, 2163, 2270, 2403
TfiI	GAWTC	5 cut(s)	53, 199, 261, 1272, 2291
Tru1I	TTAA	7 cut(s)	60, 534, 863, 1956, 2114, 2205, 2315
Tru9I	TTAA	7 cut(s)	60, 534, 863, 1956, 2114, 2205, 2315
TscAI	CASTG	6 cut(s)	144, 597, 1429, 1644, 1987, 2270
TseFI	GTSAC	5 cut(s)	31, 306, 889, 1387, 1735
TseI	GCWGC	8 cut(s)	133, 282, 763, 766, 980, 1096, 2238, 2284
Tsp45I	GTSAC	5 cut(s)	31, 306, 889, 1387, 1735
TspDTI	ATGAA	7 cut(s)	371, 539, 829, 873, 1224, 1368, 1879
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	6 cut(s)	144, 597, 1429, 1644, 1987, 2270
Van91I	CCANNNNNTGG	1 cut(s)	917
VneI	GTGCAC	1 cut(s)	398
VpaK11BI	GGWCC	5 cut(s)	73, 179, 724, 808, 2118
XapI	RAATTY	5 cut(s)	632, 836, 1666, 1697, 1931
XbaI	TCTAGA	1 cut(s)	1136
XceI	RCATGY	1 cut(s)	1453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1107
XhoI	CTCGAG	1 cut(s)	2269
XmiI	GTMKAC	1 cut(s)	1870
XmnI	GAANNNNTTC	2 cut(s)	840, 1020
XspI	CTAG	5 cut(s)	194, 1137, 1907, 2090, 2420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.