Rh7CG247400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010632
Physical Location & Seq
Reverse (-)
23257864 .. 23262559
4696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG247400.1

Sequence Viewer

Length: 753 bp
ATGCTCCATAGCAGTATCGGGTTTCCGGCAGTCGAGATAGGTCTGGAAGATGAGGTTGTGGGTGACGATGTTGGGGGCGACGCCGGCCTGGGTGATGAAGCGGTGGAGGGAGAGGAGGTCGGAGTACTTGGACTGGCGGAGCTGGGCGGCGAGGACGGAGTTGACGGTGTAGATGGTGGGGCGGCAGTTGGAGTAGATGGAGTGGCGGGTGTAGAGGGCGGCTTCTTCGAGGTCGTTGCGGCGGATAAGGTTTCCATGATTTTTGTGCTGAACTCCGAAGAGCTTTGGGACAGTGTGCACTCAGTTATGGCATCGGATATCAGGCACAGAAGAGGAAAAAGATTGTTGGAACAAAATGATAGTGAAGATCTCAACTGTGATGCAGAGATAGAAACAAGAAACAGCAGTGAGAATTTTTATACCAAGAGAGCCCAAACTGATACTGGGGGTTTTGGTACAGAGGGAATGCATCAAAGAAGATCAAGAAGGCCAACACGTGTTCCTGAACCTGCAATAACAGAGAAAAATTACACCTCTGAACACTTGAATAGAAGATCAAGAAGGCGAAGACGTGTTGCTGAACCTGCAATAACAGAGATAAATGACACCTCTGAACACTTGAATATAAGAGTTCAACCTGCTGAACAAAACAACAGTGTGTTGTTGAATCAAACTTCTGTTAACAGTGAAGATTCGCATGTTGGTCATACAGGTATAATGGATGAGTTTGCATCAGTTTTTAAAAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.12

Weight (kDa)

4.62

Isoelectric Point (pI)

67.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 517, 592, 646
AciI CCGC 8 cut(s) 101, 137, 147, 182, 206, 219, 239, 242
AcsI RAATTY 1 cut(s) 412
AcvI CACGTG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 126, 457
AflIII ACRYGT 3 cut(s) 494, 496, 571
AgsI TTSAA 4 cut(s) 547, 622, 635, 667
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 142, 283
AluI AGCT 2 cut(s) 142, 283
Alw21I GWGCWC 1 cut(s) 300
Alw44I GTGCAC 1 cut(s) 296
AoxI GGCC 2 cut(s) 85, 488
ApaLI GTGCAC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 74, 104
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 433
BbrPI CACGTG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 2 cut(s) 167, 191
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 89
BfuAI ACCTGC 3 cut(s) 517, 592, 646
BglII AGATCT 1 cut(s) 367
BisI GCNGC 4 cut(s) 148, 183, 220, 240
BlsI GCNGC 4 cut(s) 149, 184, 221, 241
BmcAI AGTACT 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 4 cut(s) 320, 370, 478, 740
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 574
BsaAI YACGTR 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 138, 448
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 727
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 138, 448
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 87, 490
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 2 cut(s) 26, 84
BslFI GGGAC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 2 cut(s) 87, 490
Bsp1286I GDGCHC 2 cut(s) 300, 433
Bsp143I GATC 3 cut(s) 367, 479, 554
BspACI CCGC 8 cut(s) 101, 137, 147, 182, 206, 219, 239, 242
BspANI GGCC 2 cut(s) 87, 490
BspCNI CTCAG 1 cut(s) 314
BspMI ACCTGC 3 cut(s) 517, 592, 646
BspQI GCTCTTC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 138, 448
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 367, 479, 554
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 5 cut(s) 167, 293, 377, 656, 686
Bst6I CTCTTC 2 cut(s) 273, 325
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 727
BstKTI GATC 3 cut(s) 370, 482, 557
BstMBI GATC 3 cut(s) 367, 479, 554
BstMWI GCNNNNNNNGC 2 cut(s) 84, 584
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 2 cut(s) 87, 490
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 1 cut(s) 727
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 4 cut(s) 298, 412, 661, 691
BveI ACCTGC 3 cut(s) 517, 592, 646
Cac8I GCNNGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 83
CseI GACGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 125, 456
CviAII CATG 2 cut(s) 256, 698
CviJI RGCY 6 cut(s) 87, 142, 222, 283, 431, 490
CviKI_1 RGCY 6 cut(s) 87, 142, 222, 283, 431, 490
CviQI GTAC 2 cut(s) 125, 456
DdeI CTNAG 1 cut(s) 301
DpnI GATC 3 cut(s) 369, 481, 556
DpnII GATC 3 cut(s) 367, 479, 554
DraI TTTAAA 1 cut(s) 742
Eam1104I CTCTTC 2 cut(s) 273, 325
EarI CTCTTC 2 cut(s) 273, 325
EciI GGCGGA 2 cut(s) 152, 257
Eco24I GRGCYC 1 cut(s) 433
Eco32I GATATC 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 2 cut(s) 259, 701
FaiI YATR 8 cut(s) 9, 257, 308, 420, 626, 699, 708, 716
FaqI GGGAC 1 cut(s) 302
FatI CATG 2 cut(s) 255, 697
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 148, 183, 220, 240
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 148, 183, 220, 240
GluI GCNGC 4 cut(s) 148, 183, 220, 240
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 87, 490
HapII CCGG 2 cut(s) 26, 84
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 259, 701
HincII GTYRAC 2 cut(s) 163, 682
HindII GTYRAC 2 cut(s) 163, 682
HinfI GANTC 2 cut(s) 667, 692
HpaI GTTAAC 1 cut(s) 682
HpaII CCGG 2 cut(s) 26, 84
HphI GGTGA 2 cut(s) 74, 104
Hpy166II GTNNAC 3 cut(s) 163, 298, 682
Hpy188I TCNGA 5 cut(s) 122, 277, 316, 538, 613
Hpy188III TCNNGA 5 cut(s) 34, 44, 483, 503, 558
Hpy8I GTNNAC 3 cut(s) 163, 298, 682
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 480, 555
HpyCH4III ACNGT 5 cut(s) 167, 293, 377, 656, 686
HpyCH4IV ACGT 2 cut(s) 496, 571
HpyCH4V TGCA 6 cut(s) 298, 383, 469, 512, 587, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 584
HpyF3I CTNAG 1 cut(s) 301
HpySE526I ACGT 2 cut(s) 496, 571
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 259, 701
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 682
Kzo9I GATC 3 cut(s) 367, 479, 554
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 9, 139
LweI GCATC 4 cut(s) 320, 370, 478, 740
MaeII ACGT 2 cut(s) 496, 571
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 369, 481, 556
MboI GATC 3 cut(s) 367, 479, 554
MboII GAAGA 9 cut(s) 59, 217, 290, 342, 377, 489, 564, 579, 701
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 300, 433
MluCI AATT 2 cut(s) 412, 526
MmeI TCCRAC 3 cut(s) 100, 169, 327
Mph1103I ATGCAT 1 cut(s) 471
MroNI GCCGGC 1 cut(s) 83
MseI TTAA 2 cut(s) 681, 741
MspI CCGG 2 cut(s) 26, 84
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 84, 584
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 3 cut(s) 367, 479, 554
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 259, 701
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 1 cut(s) 701
PciSI GCTCTTC 1 cut(s) 273
PctI GAATGC 1 cut(s) 471
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 667, 692
PkrI GCNGC 4 cut(s) 149, 184, 221, 241
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
Ppu21I YACGTR 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 87
PspCI CACGTG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 126, 457
RsaNI GTAC 2 cut(s) 125, 456
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 681, 741
SatI GCNGC 4 cut(s) 148, 183, 220, 240
Sau3AI GATC 3 cut(s) 367, 479, 554
ScaI AGTACT 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 300, 433
SfaNI GCATC 4 cut(s) 320, 370, 478, 740
Sse9I AATT 2 cut(s) 412, 526
SsiI CCGC 8 cut(s) 101, 137, 147, 182, 206, 219, 239, 242
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 5 cut(s) 167, 293, 377, 656, 686
TaiI ACGT 2 cut(s) 499, 574
TaqI TCGA 2 cut(s) 33, 228
TasI AATT 2 cut(s) 412, 526
TatI WGTACW 1 cut(s) 124
TauI GCSGC 4 cut(s) 150, 185, 222, 242
TfiI GAWTC 2 cut(s) 667, 692
Tru1I TTAA 2 cut(s) 681, 741
Tru9I TTAA 2 cut(s) 681, 741
TscAI CASTG 4 cut(s) 298, 412, 661, 691
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 4 cut(s) 298, 412, 661, 691
VneI GTGCAC 1 cut(s) 296
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
ZrmI AGTACT 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.