Rh6BG293200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010632
Physical Location & Seq
Reverse (-)
51993888 .. 52025664
31777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG293200.1

Sequence Viewer

Length: 456 bp
ATGGCATGCTCCTTACAAGCAGGTCGACCTCGTATCATGTCCCAACCGTTAGAAGAAATTTTATCACGTTATGGAAGAAGCACCGGTCGAATAGACTTTGCCCAAGTGCGATATGAGAAATTATACGAGAAGAAATTTGGAAAGGCGTTCAGACGAGCATCAAAAATTGACGGGGTAAATAATGTTCCTAAACCTGCAATAACAGAGAAAAATTACACCTCTGAACACTTGAATAGAAGATCAAGAAGGCGAAGACGTGTTGCTGAACCTGCAATAACAGAGATAAATGACACCTCTGAACACTTGAATATAAGAGTTCAACCTGCTAAACAAAACAACAGTCTGTTGTTGAATCAAACTTCTGTTAACAGTGAAGATTCGCATGTTGGTCATGCAGCTGAACTGCTGCAAAGATTTTGGTCTCCAATGGAAGCCCTTGGAGATCATCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.36

Weight (kDa)

9.99

Isoelectric Point (pI)

74.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 11, 202, 277, 331
AccI GTMKAC 1 cut(s) 25
AcsI RAATTY 2 cut(s) 57, 134
AflIII ACRYGT 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 4 cut(s) 232, 307, 320, 352
AjiI CACGTC 1 cut(s) 257
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 395, 406
ApoI RAATTY 2 cut(s) 57, 134
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AsiGI ACCGGT 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 393, 407
BcoDI GTCTC 1 cut(s) 426
BfuAI ACCTGC 4 cut(s) 11, 202, 277, 331
BisI GCNGC 2 cut(s) 396, 407
BlsI GCNGC 2 cut(s) 397, 408
BmgBI CACGTC 1 cut(s) 257
BmsI GCATC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 436
BsaWI WCCGGW 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 436
BseJI GATNNNNATC 1 cut(s) 447
BseXI GCAGC 2 cut(s) 393, 407
Bsh1285I CGRYCG 1 cut(s) 88
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 426
Bsp143I GATC 2 cut(s) 239, 442
BspMI ACCTGC 4 cut(s) 11, 202, 277, 331
BspTNI GGTCTC 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 2 cut(s) 239, 442
BssT1I CCWWGG 1 cut(s) 436
Bst4CI ACNGT 3 cut(s) 48, 341, 371
BstC8I GCNNGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 242, 445
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 2 cut(s) 239, 442
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNSI RCATGY 2 cut(s) 9, 386
BstV1I GCAGC 2 cut(s) 393, 407
BstV2I GAAGAC 1 cut(s) 259
BtrI CACGTC 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 376
BveI ACCTGC 4 cut(s) 11, 202, 277, 331
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 83
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 4 cut(s) 6, 37, 383, 392
CviJI RGCY 2 cut(s) 398, 434
CviKI_1 RGCY 2 cut(s) 398, 434
DpnI GATC 2 cut(s) 241, 444
DpnII GATC 2 cut(s) 239, 442
Eco130I CCWWGG 1 cut(s) 436
Eco31I GGTCTC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 436
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 4 cut(s) 9, 40, 386, 395
FaiI YATR 8 cut(s) 7, 38, 72, 114, 124, 311, 384, 393
FaqI GGGAC 1 cut(s) 25
FatI CATG 4 cut(s) 5, 36, 382, 391
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 396, 407
Fsp4HI GCNGC 2 cut(s) 396, 407
GluI GCNGC 2 cut(s) 396, 407
HapII CCGG 1 cut(s) 84
Hin1II CATG 4 cut(s) 9, 40, 386, 395
HincII GTYRAC 2 cut(s) 26, 367
HindII GTYRAC 2 cut(s) 26, 367
HinfI GANTC 2 cut(s) 352, 377
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 26, 367
Hpy188I TCNGA 3 cut(s) 152, 223, 298
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 2 cut(s) 26, 367
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 3 cut(s) 48, 341, 371
HpyCH4IV ACGT 2 cut(s) 67, 256
HpyCH4V TGCA 4 cut(s) 197, 272, 395, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpySE526I ACGT 2 cut(s) 67, 256
Hsp92II CATG 4 cut(s) 9, 40, 386, 395
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 239, 442
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 5 cut(s) 6, 97, 207, 282, 336
Lsp1109I GCAGC 2 cut(s) 393, 407
LweI GCATC 1 cut(s) 167
MaeII ACGT 2 cut(s) 67, 256
MalI GATC 2 cut(s) 241, 444
MboI GATC 2 cut(s) 239, 442
MboII GAAGA 6 cut(s) 65, 87, 142, 249, 264, 386
MluCI AATT 5 cut(s) 57, 119, 134, 165, 211
MnlI CCTC 3 cut(s) 39, 229, 304
MseI TTAA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 2 cut(s) 239, 442
NlaIII CATG 4 cut(s) 9, 40, 386, 395
NspI RCATGY 2 cut(s) 9, 386
PaeI GCATGC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 352, 377
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 2 cut(s) 397, 408
PsrI GAACNNNNNNTAC 2 cut(s) 168, 200
PvuII CAGCTG 1 cut(s) 398
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 396, 407
Sau3AI GATC 2 cut(s) 239, 442
SfaNI GCATC 1 cut(s) 167
SphI GCATGC 1 cut(s) 9
Sse9I AATT 5 cut(s) 57, 119, 134, 165, 211
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 3 cut(s) 48, 341, 371
TaiI ACGT 2 cut(s) 70, 259
TaqI TCGA 2 cut(s) 25, 88
TasI AATT 5 cut(s) 57, 119, 134, 165, 211
TfiI GAWTC 2 cut(s) 352, 377
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 376
TseI GCWGC 2 cut(s) 395, 406
TspRI CASTG 1 cut(s) 376
XapI RAATTY 2 cut(s) 57, 134
XceI RCATGY 2 cut(s) 9, 386
XmiI GTMKAC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.