Rh1AG316400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010632
Physical Location & Seq
Reverse (-)
54902363 .. 54921638
19276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG316400.1

Sequence Viewer

Length: 723 bp
ATGAAATTAATTTTTGAGGAATTAAAATGTTTAATAACAAGCGAGTTGACTGTTGTAGAGCGCGGAGTTTTCGAGTGCATGGATTTAGGGTTGAGAGTAATTGTTGACATATATAAATTAATGAGGTCCAACGTTATGGCATCTGATATGAGGCACAGAAGAGGAAAAAGGTTGTTGCAACAAAATGATAGTGAAGGTCTTCGTCGTGACGCAGAGATACAAACAAGAAACAATAGTGAGAATTTTTATACCATCAGAGCCCAAACTGATAGAGGGGGTTTTGGTACAGAGGGAATGCATCAAAGAAGATCAAGAAGGCCAAGACGTGTTCCTGAACCTCCAATAACAGAGAAAAATTACACCTCTGAACACTTGAATAGAAGAGCTAAACCTGCTGAAGAAAACAACACTCTGTTGTTGAATCAAACTTCTGTTAACAGTGAAGATTCGCATGATAGAGAGACTGATCTTCGCTCATCAATGACAATTACAAGCTTCCCAATCCCAACTGGTAAATGGTCTGATACTTGGTCAGGAAAAAAGAGAACACGAGAAGAGCCCCTCCCTTCAAAGGTTTCAATGAGAGTTTCAAATAGGATTGTGCCTTGCAAAAGCCTCGGAGCTTTCCTGATCGCTGCTGACCTTCAGTCAGGTTATATGAAAGTCCGAGATAGAAGATGCAGAGGAATGCTAGAAACTGTTTTCTATGGACGAGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.7

Weight (kDa)

9.87

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 63
AclI AACGTT 1 cut(s) 132
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 2 cut(s) 417, 629
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 5 cut(s) 376, 421, 570, 579, 591
AhdI GACNNNNNGTC 1 cut(s) 646
AjiI CACGTC 1 cut(s) 326
AluBI AGCT 3 cut(s) 386, 495, 623
AluI AGCT 3 cut(s) 386, 495, 623
Alw26I GTCTC 1 cut(s) 455
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 1 cut(s) 241
AseI ATTAAT 2 cut(s) 8, 119
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 126
AvaII GGWCC 1 cut(s) 126
BanII GRGCYC 2 cut(s) 262, 561
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 622
BccI CCATC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
Bme18I GGWCC 1 cut(s) 126
BmeRI GACNNNNNGTC 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 126
BmsI GCATC 3 cut(s) 149, 307, 668
BpiI GAAGAC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 616
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 514
BseDI CCNNGG 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 571
BseNI ACTGG 1 cut(s) 514
BseXI GCAGC 1 cut(s) 622
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 455
BsmI GAATGC 2 cut(s) 300, 693
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 262, 561
Bsp143I GATC 3 cut(s) 308, 466, 630
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 319
BspFNI CGCG 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 400
BspQI GCTCTTC 2 cut(s) 376, 549
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 3 cut(s) 308, 466, 630
BssSI CACGAG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 52, 440, 700
Bst6I CTCTTC 3 cut(s) 154, 376, 549
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 3 cut(s) 311, 469, 633
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 3 cut(s) 308, 466, 630
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 1 cut(s) 319
BtrI CACGTC 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 445
BveI ACCTGC 1 cut(s) 400
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 126
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 285
CviAII CATG 2 cut(s) 79, 452
CviJI RGCY 8 cut(s) 260, 319, 386, 495, 559, 615, 623, 720
CviKI_1 RGCY 8 cut(s) 260, 319, 386, 495, 559, 615, 623, 720
CviQI GTAC 1 cut(s) 285
DpnI GATC 3 cut(s) 310, 468, 632
DpnII GATC 3 cut(s) 308, 466, 630
DriI GACNNNNNGTC 1 cut(s) 646
Eam1104I CTCTTC 3 cut(s) 154, 376, 549
Eam1105I GACNNNNNGTC 1 cut(s) 646
EarI CTCTTC 3 cut(s) 154, 376, 549
Eco24I GRGCYC 2 cut(s) 262, 561
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 417, 629
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 262, 561
FaeI CATG 2 cut(s) 82, 455
FatI CATG 2 cut(s) 78, 451
Fnu4HI GCNGC 1 cut(s) 636
FriOI GRGCYC 2 cut(s) 262, 561
Fsp4HI GCNGC 1 cut(s) 636
FspBI CTAG 1 cut(s) 692
GlaI GCGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 636
HaeIII GGCC 1 cut(s) 319
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 63
Hin1II CATG 2 cut(s) 82, 455
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 3 cut(s) 48, 106, 436
HindII GTYRAC 3 cut(s) 48, 106, 436
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 2 cut(s) 421, 446
HpaI GTTAAC 1 cut(s) 436
Hpy166II GTNNAC 3 cut(s) 48, 106, 436
Hpy188I TCNGA 6 cut(s) 145, 257, 367, 523, 620, 668
Hpy188III TCNNGA 5 cut(s) 206, 312, 332, 534, 628
Hpy8I GTNNAC 3 cut(s) 48, 106, 436
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 4 cut(s) 188, 309, 576, 653
HpyCH4III ACNGT 3 cut(s) 52, 440, 700
HpyCH4IV ACGT 2 cut(s) 132, 325
HpyCH4V TGCA 5 cut(s) 78, 178, 298, 609, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpySE526I ACGT 2 cut(s) 132, 325
Hsp92II CATG 2 cut(s) 82, 455
HspAI GCGC 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 3 cut(s) 308, 466, 630
LguI GCTCTTC 2 cut(s) 376, 549
LmnI GCTCC 1 cut(s) 620
LpnPI CCDG 6 cut(s) 345, 405, 495, 519, 636, 641
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 3 cut(s) 149, 307, 668
MaeI CTAG 1 cut(s) 692
MaeII ACGT 2 cut(s) 132, 325
MaeIII GTNAC 1 cut(s) 206
MalI GATC 3 cut(s) 310, 468, 632
MboI GATC 3 cut(s) 308, 466, 630
MboII GAAGA 9 cut(s) 171, 191, 318, 393, 410, 455, 461, 566, 687
MhlI GDGCHC 2 cut(s) 262, 561
MluCI AATT 8 cut(s) 5, 9, 20, 99, 116, 241, 355, 486
MmeI TCCRAC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 5 cut(s) 8, 23, 32, 119, 435
Mva1269I GAATGC 2 cut(s) 300, 693
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeII GATC 3 cut(s) 308, 466, 630
NlaIII CATG 2 cut(s) 82, 455
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 300
PciSI GCTCTTC 2 cut(s) 376, 549
PctI GAATGC 2 cut(s) 300, 693
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 421, 446
PkrI GCNGC 1 cut(s) 637
PshBI ATTAAT 2 cut(s) 8, 119
Psp1406I AACGTT 1 cut(s) 132
PspPI GGNCC 1 cut(s) 126
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SapI GCTCTTC 2 cut(s) 376, 549
SaqAI TTAA 5 cut(s) 8, 23, 32, 119, 435
SatI GCNGC 1 cut(s) 636
Sau3AI GATC 3 cut(s) 308, 466, 630
Sau96I GGNCC 1 cut(s) 126
SduI GDGCHC 2 cut(s) 262, 561
SfaNI GCATC 3 cut(s) 149, 307, 668
SinI GGWCC 1 cut(s) 126
Sse9I AATT 8 cut(s) 5, 9, 20, 99, 116, 241, 355, 486
SsiI CCGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 692
TaaI ACNGT 3 cut(s) 52, 440, 700
TaiI ACGT 2 cut(s) 135, 328
TaqI TCGA 1 cut(s) 72
TasI AATT 8 cut(s) 5, 9, 20, 99, 116, 241, 355, 486
TfiI GAWTC 2 cut(s) 421, 446
Tru1I TTAA 5 cut(s) 8, 23, 32, 119, 435
Tru9I TTAA 5 cut(s) 8, 23, 32, 119, 435
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 17, 674
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 126
VspI ATTAAT 2 cut(s) 8, 119
XapI RAATTY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.