Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010632

Physical Location & Seq

Genomic Coordinates Reverse (-)

40824114 .. 40846608

Gene Structure 22495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG379300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAAGGCAAAGTTTTCAAGGACTATTACCTGCGAAGAAGTTTTGCCCCTGAGATGGATATATCGCATCCTGCCGTTGATTCCTCCTTCTACAGTCTTATCAAGAAGGATCCGGAGAGATCGAGAGACTGTGAGAGAGACGCCAGCTATGGCATAAACAACGAAGATGCTTACTTTATTATGATGGCATCTTCGAGTAGGACGAAGCGAGTGGAAAGATTGTTTGGAGGGACTAAATGTAATCGTATTTTTTTGCGTGGAGATGAATTGGATCAAGTTGATTCAAAGAGATGGAAAAGAATGTTTGAGCAACAAGTTCCTGAAAGGTCAAATGCCGTTGCGAATGAAGATTCATTTGTTACCCTAGAAGATCAGCATTTCCAGATGCATAAAAAGGAAAGCCGAAGCTTTCACTCTCCCCATGGATGCTTTTATCCAAAGCAGGGTTCAAACCTCCGACCTATTACCAGTATCGAAGCAGCGGTCGCCCTGTTTAGAGGCCCATTGCATTGCCATCCGAGCCACACCACATGGATATTGATTATTCCTTTTAGAATCATCCCATCAGATGTCAATGAAGTTTGCAGCAAAGAGCAAAAAACAACAATAGCACCTGAACATGTGCTCAAGGCTTTACAGACTCTTATCTTTGAAGAAGATACAAGGAAGACACCTTCACCATTACCAAATATCAAGCATCTCAAGGTAGAGTTAAGCACTGATACAACAGCAGTAACACATACTGAATTGATACACTCCTTGCGTTGGATGGCACCCCCATCTATGAAGTTTCTATCAGTAAAACAAAATTCAGGGCTTCTCTTTGAATTTAAACAGAAGGATTGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

283

Amino Acids

32.69

Weight (kDa)

8.45

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010632)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000024950
rosa_roxburghii	Rroxscaffold_3G00266600 Rroxscaffold_7G00204960
rosa_rugosa	Rorug01G0063400 Rorug01G0139500.1 Rorug01G0139900.1 Rorug02G0167400 Rorug05G0092000 Rorug06G0396400
rosa_samantha	Rh1AG316400 Rh2BG022500 Rh4CG269800 Rh4CG293500 Rh5DG263100 Rh6BG293200 Rh6DG138300 Rh7BG053800 Rh7BG379300 Rh7CG247400 Rh7DG403400
rosa_wichuraiana	Rw1G002800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	772
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	3 cut(s)	104, 117, 279
AcsI	RAATTY	2 cut(s)	808, 827
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	55, 443, 765
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	5 cut(s)	19, 285, 450, 653, 827
AjuI	GAANNNNNNNTTGG	4 cut(s)	207, 239, 430, 462
AluBI	AGCT	2 cut(s)	147, 408
AluI	AGCT	2 cut(s)	147, 408
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	120, 132
AlwI	GGATC	3 cut(s)	104, 117, 279
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	2 cut(s)	479, 585
ApoI	RAATTY	2 cut(s)	808, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	468, 500
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	669
BamHI	GGATCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	491, 597
BccI	CCATC	7 cut(s)	49, 178, 285, 522, 571, 763, 787
BceAI	ACGGC	2 cut(s)	59, 320
BcoDI	GTCTC	2 cut(s)	120, 132
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	2 cut(s)	480, 586
BlsI	GCNGC	2 cut(s)	481, 587
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	111, 774
BmsI	GCATC	6 cut(s)	76, 157, 197, 375, 416, 706
BpiI	GAAGAC	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	611, 686
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 443, 765
Bse1I	ACTGG	1 cut(s)	468
Bse3DI	GCAATG	2 cut(s)	503, 508
BseAI	TCCGGA	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	5 cut(s)	67, 431, 514, 558, 774
BseLI	CCNNNNNNNGG	3 cut(s)	55, 443, 765
BseMI	GCAATG	2 cut(s)	503, 508
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	491, 597
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	501
BshNI	GGYRCC	1 cut(s)	772
BsiEI	CGRYCG	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	55, 443, 765
BsmAI	GTCTC	2 cut(s)	120, 132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	109, 119, 271, 370
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	111, 774
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	104, 117, 279
BspT107I	GGYRCC	1 cut(s)	772
BsrDI	GCAATG	2 cut(s)	503, 508
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	4 cut(s)	109, 119, 271, 370
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	95, 131
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	5 cut(s)	67, 431, 514, 558, 774
BstKTI	GATC	4 cut(s)	112, 122, 274, 373
BstMAI	GTCTC	2 cut(s)	120, 132
BstMBI	GATC	4 cut(s)	109, 119, 271, 370
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 519
BstNSI	RCATGY	1 cut(s)	623
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	491, 597
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	5 cut(s)	67, 431, 514, 558, 774
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	500
CseI	GACGC	1 cut(s)	149
CviAII	CATG	3 cut(s)	422, 531, 620
CviJI	RGCY	7 cut(s)	147, 402, 408, 501, 522, 632, 817
CviKI_1	RGCY	7 cut(s)	147, 402, 408, 501, 522, 632, 817
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	4 cut(s)	111, 121, 273, 372
DpnII	GATC	4 cut(s)	109, 119, 271, 370
DraI	TTTAAA	1 cut(s)	832
Eco130I	CCWWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	3 cut(s)	425, 534, 623
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	3 cut(s)	421, 530, 619
Fnu4HI	GCNGC	2 cut(s)	480, 586
FokI	GGATG	5 cut(s)	54, 438, 501, 545, 781
Fsp4HI	GCNGC	2 cut(s)	480, 586
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	480, 586
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	425, 534, 623
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	5 cut(s)	80, 281, 350, 555, 640
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	669
Hpy188I	TCNGA	3 cut(s)	458, 519, 568
Hpy188III	TCNNGA	5 cut(s)	103, 113, 123, 320, 382
HpyAV	CCTTC	4 cut(s)	97, 100, 684, 832
HpyCH4III	ACNGT	2 cut(s)	95, 131
HpyCH4V	TGCA	3 cut(s)	388, 508, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 519
HpyF3I	CTNAG	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	425, 534, 623
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	109, 119, 271, 370
Lsp1109I	GCAGC	2 cut(s)	491, 597
LweI	GCATC	6 cut(s)	76, 157, 197, 375, 416, 706
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	358, 733
MalI	GATC	4 cut(s)	111, 121, 273, 372
MboI	GATC	4 cut(s)	109, 119, 271, 370
MboII	GAAGA	8 cut(s)	48, 176, 183, 359, 380, 665, 668, 679
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	4 cut(s)	266, 746, 808, 827
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	2 cut(s)	481, 746
MnlI	CCTC	4 cut(s)	94, 221, 464, 491
Mph1103I	ATGCAT	1 cut(s)	390
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	3 cut(s)	713, 831, 850
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	485, 519
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	4 cut(s)	109, 119, 271, 370
NlaIII	CATG	3 cut(s)	425, 534, 623
NlaIV	GGNNCC	2 cut(s)	111, 774
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	1 cut(s)	623
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	80, 281, 350, 555
PkrI	GCNGC	2 cut(s)	481, 587
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
PscI	ACATGT	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	111, 774
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	713, 831, 850
SatI	GCNGC	2 cut(s)	480, 586
Sau3AI	GATC	4 cut(s)	109, 119, 271, 370
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	634
SduI	GDGCHC	1 cut(s)	627
SetI	ASST	9 cut(s)	33, 149, 329, 410, 456, 463, 616, 676, 708
SfaNI	GCATC	6 cut(s)	76, 157, 197, 375, 416, 706
SfcI	CTRYAG	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	626, 701
SmoI	CTYRAG	2 cut(s)	626, 701
Sse9I	AATT	4 cut(s)	266, 746, 808, 827
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	95, 131
TaqI	TCGA	3 cut(s)	122, 194, 474
TasI	AATT	4 cut(s)	266, 746, 808, 827
TfiI	GAWTC	4 cut(s)	80, 281, 350, 555
Tru1I	TTAA	3 cut(s)	713, 831, 850
Tru9I	TTAA	3 cut(s)	713, 831, 850
TscAI	CASTG	1 cut(s)	724
TseI	GCWGC	2 cut(s)	479, 585
TspDTI	ATGAA	5 cut(s)	279, 342, 360, 591, 800
TspRI	CASTG	1 cut(s)	724
XapI	RAATTY	2 cut(s)	808, 827
XceI	RCATGY	1 cut(s)	623
XspI	CTAG	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.