Rh7BG053800

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010632
Physical Location & Seq
Reverse (-)
3556019 .. 3576353
20335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG053800.1

Sequence Viewer

Length: 579 bp
ATGGCGTCTAATATGAGATACAAAAGAGGAAAAAGATTGTTACAACGAAATGATGGTGAAAGTCTTAATCATGAAGCACAGATACAAGAGGCAAACAATGGTGAAATTTTTTGTGCCATGACAGCCCAAACTGATAGTGGTGGTATTAGTACAGACGCAATGCATCAAAGAAGATCAAAAAGGGCAAGACGTGTGCCTGAGGCTGCAGTAACAGAGAAAAACTACAGTTCTGAACACTTGAATAGAAGATTTCAAACTGCTGAACAAAACAACACTCTGCTGCTGAATGAAAGTTCAGTTCACTATGAAAATCTAGATGTCAATAATACAGCCAAAGATGGATCTTCAACAACGTATATGATCGAAGTGGTATATTTCCAGGTTGAGGTGGATGAGAAAGGAGCAAGTTCAAGTAATAAAGGAAGCAGCAATTGGAATTGTGCTTCGTCGGTGACTAGTGATGAAGGAGGTGGGTATAGAGCCCCTGGGGTAGTTGCTAGATTAATGGGTCTGGATTCGTTGCCAATTTCAACGGTTACTGATTCATCTTCTACCTTATCAATCGCCTTTCCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 VARLMGL

Protein Analysis

192

Amino Acids

21.07

Weight (kDa)

5.83

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 149 - 178 2.8e-14 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 5 cut(s) 241, 254, 348, 411, 531
AhlI ACTAGT 1 cut(s) 455
AjiI CACGTC 1 cut(s) 191
AjnI CCWGG 2 cut(s) 378, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AlwI GGATC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 203, 280, 426
ApoI RAATTY 1 cut(s) 105
AseI ATTAAT 1 cut(s) 503
AsuHPI GGTGA 3 cut(s) 68, 113, 463
AxyI CCTNAGG 1 cut(s) 198
BanII GRGCYC 1 cut(s) 484
BarI GAAGNNNNNNTAC 2 cut(s) 66, 98
BbvI GCAGC 3 cut(s) 190, 267, 438
BccI CCATC 2 cut(s) 47, 332
BciT130I CCWGG 2 cut(s) 380, 486
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 4 cut(s) 314, 456, 498, 577
BfmI CTRYAG 2 cut(s) 204, 223
BisI GCNGC 3 cut(s) 204, 281, 427
BlsI GCNGC 3 cut(s) 205, 282, 428
Bme1390I CCNGG 2 cut(s) 380, 486
BmgBI CACGTC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 380, 486
BmsI GCATC 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 484, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 2 cut(s) 380, 486
BseDI CCNNGG 2 cut(s) 484, 485
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 3 cut(s) 190, 267, 438
BslI CCNNNNNNNGG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 3 cut(s) 173, 341, 360
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 484, 485
BssMI GATC 3 cut(s) 173, 341, 360
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 380, 486
Bst4CI ACNGT 2 cut(s) 227, 535
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 3 cut(s) 176, 344, 363
BstMBI GATC 3 cut(s) 173, 341, 360
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 2 cut(s) 380, 486
BstSCI CCNGG 2 cut(s) 378, 484
BstSFI CTRYAG 2 cut(s) 204, 223
BstV1I GCAGC 3 cut(s) 190, 267, 438
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
Bsu36I CCTNAGG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 397
CciI TCATGA 1 cut(s) 70
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 150
CviAII CATG 2 cut(s) 71, 118
CviJI RGCY 4 cut(s) 125, 203, 332, 482
CviKI_1 RGCY 4 cut(s) 125, 203, 332, 482
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 175, 343, 362
DpnII GATC 3 cut(s) 173, 341, 360
Eco24I GRGCYC 1 cut(s) 484
Eco81I CCTNAGG 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 378, 484
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 484
FaeI CATG 2 cut(s) 74, 121
FaiI YATR 8 cut(s) 14, 72, 119, 306, 357, 359, 373, 477
FatI CATG 2 cut(s) 70, 117
Fnu4HI GCNGC 3 cut(s) 204, 281, 427
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 3 cut(s) 204, 281, 427
FspBI CTAG 4 cut(s) 314, 456, 498, 577
GluI GCNGC 3 cut(s) 204, 281, 427
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 74, 121
HinfI GANTC 2 cut(s) 515, 542
HphI GGTGA 3 cut(s) 68, 113, 463
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 71, 314, 512
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 227, 535
HpyCH4IV ACGT 2 cut(s) 190, 353
HpyCH4V TGCA 2 cut(s) 163, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 2 cut(s) 190, 353
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 74, 121
Kzo9I GATC 3 cut(s) 173, 341, 360
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 6 cut(s) 210, 365, 392, 471, 497, 498
Lsp1109I GCAGC 3 cut(s) 190, 267, 438
LweI GCATC 1 cut(s) 172
MaeI CTAG 4 cut(s) 314, 456, 498, 577
MaeII ACGT 2 cut(s) 190, 353
MaeIII GTNAC 4 cut(s) 39, 208, 451, 535
MalI GATC 3 cut(s) 175, 343, 362
MboI GATC 3 cut(s) 173, 341, 360
MboII GAAGA 4 cut(s) 183, 258, 336, 540
MfeI CAATTG 1 cut(s) 430
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 4 cut(s) 105, 430, 436, 525
MnlI CCTC 5 cut(s) 20, 82, 193, 379, 461
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 2 cut(s) 66, 503
MspR9I CCNGG 2 cut(s) 380, 486
MunI CAATTG 1 cut(s) 430
MvaI CCWGG 2 cut(s) 380, 486
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 3 cut(s) 173, 341, 360
NlaIII CATG 2 cut(s) 74, 121
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 165
PagI TCATGA 1 cut(s) 70
PasI CCCWGGG 1 cut(s) 485
PfeI GAWTC 2 cut(s) 515, 542
PkrI GCNGC 3 cut(s) 205, 282, 428
PshBI ATTAAT 1 cut(s) 503
Psp6I CCWGG 2 cut(s) 378, 484
PspGI CCWGG 2 cut(s) 378, 484
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 341
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 66, 503
SatI GCNGC 3 cut(s) 204, 281, 427
Sau3AI GATC 3 cut(s) 173, 341, 360
ScrFI CCNGG 2 cut(s) 380, 486
SduI GDGCHC 1 cut(s) 484
SetI ASST 6 cut(s) 193, 356, 384, 390, 472, 557
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 2 cut(s) 204, 223
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 4 cut(s) 105, 430, 436, 525
SspMI CTAG 4 cut(s) 314, 456, 498, 577
StyD4I CCNGG 2 cut(s) 378, 484
TaaI ACNGT 2 cut(s) 227, 535
TaiI ACGT 2 cut(s) 193, 356
TaqI TCGA 1 cut(s) 363
TasI AATT 4 cut(s) 105, 430, 436, 525
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 2 cut(s) 515, 542
Tru1I TTAA 2 cut(s) 66, 503
Tru9I TTAA 2 cut(s) 66, 503
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 203, 280, 426
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 5 cut(s) 87, 303, 321, 477, 534
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 1 cut(s) 105
XbaI TCTAGA 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XspI CTAG 4 cut(s) 314, 456, 498, 577
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.