Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011329

Physical Location & Seq

Genomic Coordinates Forward (+)

48618210 .. 48626934

Gene Structure 8725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3609 bp

ATGGACTCCATTCTCGCTCTCCGTCCCCTCCCCAATCTCTTCTCCCCTCACCGCAACCCCCCATCCTCACTTTTCACGCCCAACCGCCGCATCAAAATCCAAACCAAATCCTCCAGAACCTCTCAAATTTGTCACATTCCCAAAGCATTCGTCTCTCCAGAACCTTCCTCGAGCTCAAAGCACGAAGAAAGCCCGATTCTCGCGGTCGCAAGGCAGGTGGTGCTCGCCGCGGTCTGTTTCGGCATCGGTTTCGCTCCGTTCCGGCCGGCGATCGCGGCGGTTGCGGCTCCGGTGGCGGCGGTGGTGGAGGAGAAGAAGGAGGTGAGTTACGAGAGTGAGGGCTACGCGGAGGTCACTAAGAGGCTGCTGGAGACGGCGGCGGTGCTGGTGAGGAGAGTGGAGGAGGCTAGGGTTGGGAAGGGGGATGTGAAGGCGGTGGAGGAGGCGTGGCGGGCGGTGAGGGCGAAGAAGGAAGAGTTGCAAGGGGAGATATTGAGTGCGGTGCAGGTGGAGCTGACGAGGTTGAGGAGGAGCAAGGAGGGGCTGGTGAGGCGGTCCGATGAGATTGTGGTGGAGGTGGTGAAGGCGAGGAGGGAAATTGAGAAGGCGGTGTTGCGAGATGATTCCGGTAAGGGGGAGGTGAAGGAGAGGGTGGAGAGGATGGAGGAGAGGGTGGGGAGGTTGGAGGAGGAGTATAGTGAGGTTTGGGAGAGTGTTGGAGAGATTGAGGATGAGATTTCAACGAGGGAGACGTTGGCGTTGAGCTATGGAGTTAGGGAGCTTTGTTTTATTGAGAAGGAATGTGAGCAGTTGGTGCAGAGTTTTACCCGTCAAATGAGGAGGAAGAGTGTCGAAAGTGTGCCAAAAAAATCCGTTACCAAGCTTTCTAAATCTGATATACAGAAAGACTTGGAAAATACGCAAAGAAGACTTTTGGAGCAAACGATTCTGCCAAATGTTGTGGAAGTTGATGATGTGGGACCTTTGTTTACTTCAACGGAGTTTGCTCAAAATATAAAAAAAGGCCTTGAGGAGTCAAGGAAGCTGCAGATAAGGGCTGAGTCTCAAATAAGGAAGAAAGTGAAAAAATTTGGCGATGAAAAGCGGTATCTTGTACAAACACCAGAAGATGAGGTGCTGAAGGGCTTTCCAGAAGTTGAGTTGAAGTGGATGTTTGGAGAGAAGGAGGTTGTCGTCCCTAAAGCTGCTGGCCTCCATTTATACCATGGGTGGAAGAAGTGGCGTGAAGAAGCTAAGGCAGACCTGAAAAGAAGTCTCATAGAAGACGTTGATTTTGGTAAACAGTACGTGGCCAAAAGACAGGAACTAATTCTTCTGGACCGAGATAGGCTGGTGTCAAAGACTTGGTACAATGAGGAAAAAAATAGGTGGGAAATGGACCCAGTGGCTGTTCCTTTTGCCGTCTCAAAGAAACTGGTGGAGCATGCTCGTATTAGGCATGATTGGGCAGCCATGTACATTGCACTCAAGGGTGATGACAAGGAATATTATGTTGACATTAAGGAATATGAAATGCTCTTCGAAGATTTTGGAGGGTTTGATGGGTTGTACATGAAAATGCTTGCCAGTGGTATTCCAACTGCTGTTCACCTGATGTGGATCCCTTTGTCTGAGTTGAATTTCCGTCAACAATTTCTCTTGACTGTCAGGCTGTCTCACCAATGTCTTAATGCATTGTGGAAGACAACAGTAGTATCATATGCAAGAGATTGGGTTATGCAGAAATTTAGAAATATAAACGACGACATAATGATGACAATAGCGTTTCCTATTGTGGAGCTTATACTCCCCTACTATGTAAGGATACAGTTGGGGATGGCATGGCCTGAGGAAATTGATCAAGCTGTTGACTCAACGTGGTACTTGAAATGGCAATCTGAGGCAGAAACAAATTACAAATCCAGAAAAACGGATGATATCCAGTGGTACATTTGGTTTCTCATTAGAACCGTTGTGTATGGATACATCGTGTTTCATGTTTTTGGTTTCCTGAAGAGAGAAGTACCAACTGTTCTTGGTTATGGGCCAATACGCACTGATCCAAACAGGGATAAGTTGAAGAGAGTGAAATACTATCTTAATTATCGGGTGAGGAAAGTTAAACAGAACAAAAAGGCTGGTGTTGATCCTATAACACGTGCTTTTGACCAAATGAAGAGGGTAAAGAACCCACCAATACCATTGAAGGACTTTGCGAGTATTGAATCCATGAAAGAGGAAATCAATGAAGTTGTGGCATTTCTTAAAAATCCTGGAGCCTTTCAAGAAATGGGTGCCCGCGCACCTCGGGGAGTTCTAATTGTGGGTGAGAGGGGAACAGGAAAGACATCTCTAGCACTGGCTATAGCTGCTCAAGCTAGGGTGCCTGTGGTTAACATTAAAGCTCAAGAGTTGGAGGCTGGACTATGGGTTGGGCAAAGTGCATCTAATGTTAGAGAGCTGTTTCAAACAGCCAGAGAATTGGCACCTGTTATCATATTTGTGGAGGATTTTGACCTTTTTGCTGGTGTTCGAGGCAAATTCATTCACACTAAAAATCAGGATCATGAAGCTTTTATCAATCAACTGCTTGTGGAACTTGATGGGTTTGAGAAACAAGATGGGGTTGTATTGATGGCTACTACTGGAAATCTCAAGCAAATTGATGATGCCTTAAAGCGGCCTGGTCGCATGGATAGAGTATTTCATCTTCAAAGGCCAACTCAAGCAGAAAGGGAGAAGATATTACACATAGCTGCAAAAGAAACAATGGATAATGAGCTCATTGATTTTGTAGACTGGAGAAAGGTTGCTGAAAAGACTGCTCTTTTAAGGCCTATAGAATTAAAGCTGGTACCTGCATCTTTGGAAGGTAGTGCCTTTAGGAGCAAGTTTCTCGATACAGATGAGCTTTTGAGCTACAGTAGTTGGTTTGCGACTTTCAGCAGCATTATTCCAAAAGGAGTGCGGAAAACCAAAATTGCGAAGAAGCTAAGCAAAATGCTGGTGAATCATCTGGGGCTAACATTGACTAAAGAAGACCTGCAGAGTGTGGTTGATCTAATGGAGCCATATGGTCAGATAAGCAATGGAATAGAACTTCTAAACCCTCCTCTTGAGTGGACGAGGGAGACCAAGTTCCCTCATGCTGTCTGGGCTGCAGGTCGCGGTCTCATTGCCCTTCTGTTGCCAAACTTTGATGTTGTAGACAATATATGGCTGGAGCCATTGTCTTGGCAGGGAATCGGATGTACAAAAATAACCAAGGCGAGAAATGAAGGTTCTGGGAATGGAAATGCTGAATCAAGATCATACCTTGAAAAGAAGCTTGTATTTTGTTTTGGTTCGCACATTGCAGCACAAATGCTACTCCCTTTTGGGGAGGAGAACTTGCTTTCTTCTTCAGAGTTAACGCAAGCACAGGAGATGGTTGAGATGTTGCTTGAGTTTGAAATCTTGACTGCAAAGGATCTAGGAAGGATTTTTGAAGAAAATGGTGGGGTTCAAGAAAAAGAGCCTTTTTCCCTTTCTGGAGCTCATGGTAGAGAGACATTGTCTGGCAGCTTTCTCGAAGGTGGGGATGTATCAGCCACTGTGCTTTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

1203

Amino Acids

137.06

Weight (kDa)

7.59

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	772 - 905	1.1e-29	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04340
fragaria_vesca	FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550
malus_domestica	MD04G1232400.v1.1
prunus_persica	Prupe.6G352000_v2.0.a1
pyrus_communis	pycom04g20580
rosa_chinensis	RchiOBHm_Chr3g0449311
rosa_laevigata	RLG00000025840
rosa_multiflora	Rmu_sc0007719.1_g000003
rosa_roxburghii	Rroxscaffold_6G00427310
rosa_rugosa	Rorug02G0619600
rosa_samantha	Rh3AG017600 Rh3BG017700 Rh3CG016700 Rh3DG018000
rosa_wichuraiana	Rw1G017600 Rw3G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	205, 496
Acc36I	ACCTGC	5 cut(s)	205, 496, 2866, 3051, 3152
Acc65I	GGTACC	1 cut(s)	2854
AccB1I	GGYRCC	4 cut(s)	2294, 2383, 2485, 2854
AccI	GTMKAC	2 cut(s)	2796, 3207
AccII	CGCG	6 cut(s)	203, 230, 275, 347, 2301, 3168
AclWI	GGATC	6 cut(s)	1615, 1628, 2054, 2141, 2571, 3477
AcoI	YGGCCR	2 cut(s)	263, 1311
AcsI	RAATTY	5 cut(s)	126, 1088, 1639, 1745, 2540
AcuI	CTGAAG	3 cut(s)	1160, 2033, 3387
AcvI	CACGTG	1 cut(s)	2159
AfiI	CCNNNNNNNGG	3 cut(s)	633, 2679, 3379
AflIII	ACRYGT	1 cut(s)	2156
AjnI	CCWGG	2 cut(s)	2272, 2683
AloI	GAACNNNNNNTCC	2 cut(s)	3122, 3154
Alw21I	GWGCWC	4 cut(s)	176, 225, 2784, 3538
AlwI	GGATC	6 cut(s)	1615, 1628, 2054, 2141, 2571, 3477
AlwNI	CAGNNNCTG	2 cut(s)	1409, 3593
Ama87I	CYCGRG	2 cut(s)	169, 2307
AoxI	GGCC	9 cut(s)	263, 1024, 1210, 1311, 1844, 2045, 2681, 2717, 2834
ApoI	RAATTY	5 cut(s)	126, 1088, 1639, 1745, 2540
ArsI	GACNNNNNNTTYG	4 cut(s)	135, 167, 1277, 1309
AsiSI	GCGATCGC	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	1329
Asp718I	GGTACC	1 cut(s)	2854
AspLEI	GCGC	1 cut(s)	2303
AspS9I	GGNCC	5 cut(s)	555, 980, 1339, 1399, 2045
AsuII	TTCGAA	1 cut(s)	1542
AvaI	CYCGRG	2 cut(s)	169, 2307
AvaII	GGWCC	4 cut(s)	555, 980, 1339, 1399
AxyI	CCTNAGG	1 cut(s)	1848
BaeGI	GKGCMC	1 cut(s)	2299
BaeI	ACNNNNGTAYC	2 cut(s)	1698, 1731
BalI	TGGCCA	1 cut(s)	1313
BamHI	GGATCC	1 cut(s)	1620
BanI	GGYRCC	4 cut(s)	2294, 2383, 2485, 2854
BanII	GRGCYC	3 cut(s)	176, 2784, 3538
BarI	GAAGNNNNNNTAC	2 cut(s)	2694, 2726
BbrPI	CACGTG	1 cut(s)	2159
BbsI	GAAGAC	4 cut(s)	934, 1290, 1709, 3045
Bbv12I	GWGCWC	4 cut(s)	176, 225, 2784, 3538
BccI	CCATC	8 cut(s)	70, 655, 1556, 1831, 2597, 2615, 2629, 3421
BceAI	ACGGC	2 cut(s)	390, 1406
BcgI	CGANNNNNNTGC	6 cut(s)	232, 266, 2878, 2912, 3550, 3584
BciT130I	CCWGG	2 cut(s)	2274, 2685
BciVI	GTATCC	2 cut(s)	1818, 1976
BclI	TGATCA	1 cut(s)	1858
BfaI	CTAG	4 cut(s)	408, 2354, 2379, 3473
BfmI	CTRYAG	6 cut(s)	1046, 2364, 2838, 2920, 3044, 3159
BfuAI	ACCTGC	5 cut(s)	205, 496, 2866, 3051, 3152
BfuI	GTATCC	2 cut(s)	1818, 1976
BlpI	GCTNAGC	1 cut(s)	2993
Bme1390I	CCNGG	2 cut(s)	2274, 2685
Bme18I	GGWCC	4 cut(s)	555, 980, 1339, 1399
BmeT110I	CYCGRG	2 cut(s)	169, 2307
BmgT120I	GGNCC	5 cut(s)	555, 980, 1339, 1399, 2045
BmrFI	CCNGG	2 cut(s)	2274, 2685
BmrI	ACTGGG	1 cut(s)	1397
BmsI	GCATC	5 cut(s)	99, 252, 2453, 2659, 2870
BmuI	ACTGGG	1 cut(s)	1397
BpiI	GAAGAC	4 cut(s)	934, 1290, 1709, 3045
BpmI	CTGGAG	7 cut(s)	97, 141, 389, 2295, 2821, 3242, 3552
Bpu10I	CCTNAGC	1 cut(s)	1254
Bpu1102I	GCTNAGC	1 cut(s)	2993
Bpu14I	TTCGAA	1 cut(s)	1542
BpuEI	CTTGAG	8 cut(s)	1049, 1472, 2358, 2391, 2639, 2709, 3137, 3464
BsaAI	YACGTR	2 cut(s)	1309, 2159
BsaBI	GATNNNNATC	1 cut(s)	1619
BsaI	GGTCTC	2 cut(s)	3125, 3176
BsaJI	CCNNGG	4 cut(s)	228, 1225, 2306, 3264
BsaWI	WCCGGW	2 cut(s)	289, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	633, 2679, 3379
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	7 cut(s)	1403, 1440, 1587, 1942, 2364, 2650, 2804
Bse21I	CCTNAGG	1 cut(s)	1848
Bse3DI	GCAATG	4 cut(s)	1479, 3094, 3174, 3351
Bse8I	GATNNNNATC	1 cut(s)	1619
BseBI	CCWGG	2 cut(s)	2274, 2685
BseDI	CCNNGG	4 cut(s)	228, 1225, 2306, 3264
BseGI	GGATG	9 cut(s)	62, 430, 666, 736, 1176, 1842, 1939, 3254, 3586
BseJI	GATNNNNATC	1 cut(s)	1619
BseLI	CCNNNNNNNGG	3 cut(s)	633, 2679, 3379
BseMI	GCAATG	4 cut(s)	1479, 3094, 3174, 3351
BseMII	CTCAG	4 cut(s)	1050, 1623, 1839, 1890
BseNI	ACTGG	7 cut(s)	1403, 1440, 1587, 1942, 2364, 2650, 2804
BseSI	GKGCMC	1 cut(s)	2299
BseX3I	CGGCCG	1 cut(s)	263
BsgI	GTGCAG	2 cut(s)	524, 836
Bsh1236I	CGCG	6 cut(s)	203, 230, 275, 347, 2301, 3168
Bsh1285I	CGRYCG	3 cut(s)	207, 266, 273
BshFI	GGCC	9 cut(s)	265, 1026, 1212, 1313, 1846, 2047, 2683, 2719, 2836
BshNI	GGYRCC	4 cut(s)	2294, 2383, 2485, 2854
BsiEI	CGRYCG	3 cut(s)	207, 266, 273
BsiHKAI	GWGCWC	4 cut(s)	176, 225, 2784, 3538
BsiHKCI	CYCGRG	2 cut(s)	169, 2307
BsiSI	CCGG	4 cut(s)	262, 266, 290, 627
BslFI	GGGAC	3 cut(s)	9, 993, 1181
BslI	CCNNNNNNNGG	3 cut(s)	633, 2679, 3379
BsmBI	CGTCTC	4 cut(s)	157, 365, 743, 1429
BsmFI	GGGAC	3 cut(s)	9, 993, 1181
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	9 cut(s)	265, 1026, 1212, 1313, 1846, 2047, 2683, 2719, 2836
Bso31I	GGTCTC	2 cut(s)	3125, 3176
BsoBI	CYCGRG	2 cut(s)	169, 2307
Bsp119I	TTCGAA	1 cut(s)	1542
Bsp1286I	GDGCHC	5 cut(s)	176, 225, 2299, 2784, 3538
Bsp1407I	TGTACA	4 cut(s)	1114, 1476, 1569, 3251
Bsp143I	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
Bsp1720I	GCTNAGC	1 cut(s)	2993
Bsp19I	CCATGG	1 cut(s)	1225
BspANI	GGCC	9 cut(s)	265, 1026, 1212, 1313, 1846, 2047, 2683, 2719, 2836
BspCNI	CTCAG	4 cut(s)	1051, 1624, 1840, 1891
BspFNI	CGCG	6 cut(s)	203, 230, 275, 347, 2301, 3168
BspHI	TCATGA	1 cut(s)	2566
BspMAI	CTGCAG	3 cut(s)	1050, 3048, 3163
BspMI	ACCTGC	5 cut(s)	205, 496, 2866, 3051, 3152
BspPI	GGATC	6 cut(s)	1615, 1628, 2054, 2141, 2571, 3477
BspQI	GCTCTTC	1 cut(s)	1544
BspT104I	TTCGAA	1 cut(s)	1542
BspT107I	GGYRCC	4 cut(s)	2294, 2383, 2485, 2854
BspTNI	GGTCTC	2 cut(s)	3125, 3176
BsrDI	GCAATG	4 cut(s)	1479, 3094, 3174, 3351
BsrFI	RCCGGY	1 cut(s)	265
BsrGI	TGTACA	4 cut(s)	1114, 1476, 1569, 3251
BsrI	ACTGG	7 cut(s)	1403, 1440, 1587, 1942, 2364, 2650, 2804
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	228, 1225, 2306, 3264
BssMI	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
BssT1I	CCWWGG	2 cut(s)	1225, 3264
Bst2UI	CCWGG	2 cut(s)	2274, 2685
Bst4CI	ACNGT	8 cut(s)	1305, 1666, 1711, 1830, 1972, 2032, 2924, 3595
Bst6I	CTCTTC	7 cut(s)	44, 468, 839, 1544, 2009, 2075, 2171
BstAPI	GCANNNNNTGC	2 cut(s)	220, 814
BstAUI	TGTACA	4 cut(s)	1114, 1476, 1569, 3251
BstBAI	YACGTR	2 cut(s)	1309, 2159
BstBI	TTCGAA	1 cut(s)	1542
BstC8I	GCNNGC	8 cut(s)	225, 267, 453, 1210, 1446, 1584, 2299, 3417
BstDEI	CTNAG	7 cut(s)	357, 1059, 1254, 1632, 1848, 1899, 2993
BstDSI	CCRYGG	2 cut(s)	228, 1225
BstF5I	GGATG	9 cut(s)	62, 430, 666, 736, 1176, 1842, 1939, 3254, 3586
BstFNI	CGCG	6 cut(s)	203, 230, 275, 347, 2301, 3168
BstHHI	GCGC	1 cut(s)	2303
BstKTI	GATC	9 cut(s)	273, 1623, 1861, 2062, 2149, 2566, 3061, 3311, 3472
BstMBI	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
BstMCI	CGRYCG	3 cut(s)	207, 266, 273
BstNI	CCWGG	2 cut(s)	2274, 2685
BstNSI	RCATGY	1 cut(s)	1448
BstSCI	CCNGG	2 cut(s)	2272, 2683
BstSFI	CTRYAG	6 cut(s)	1046, 2364, 2838, 2920, 3044, 3159
BstSLI	GKGCMC	1 cut(s)	2299
BstUI	CGCG	6 cut(s)	203, 230, 275, 347, 2301, 3168
BstV2I	GAAGAC	4 cut(s)	934, 1290, 1709, 3045
BstX2I	RGATCY	2 cut(s)	1620, 3469
BstXI	CCANNNNNNTGG	2 cut(s)	2482, 3234
BstYI	RGATCY	2 cut(s)	1620, 3469
BstZI	CGGCCG	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	1848
BsuI	GTATCC	2 cut(s)	1818, 1976
BsuRI	GGCC	9 cut(s)	265, 1026, 1212, 1313, 1846, 2047, 2683, 2719, 2836
BtgI	CCRYGG	2 cut(s)	228, 1225
BtgZI	GCGATG	1 cut(s)	1110
BtsCI	GGATG	9 cut(s)	62, 430, 666, 736, 1176, 1842, 1939, 3254, 3586
BtsIMutI	CAGTG	6 cut(s)	1410, 1594, 1949, 2055, 2357, 3591
BveI	ACCTGC	5 cut(s)	205, 496, 2866, 3051, 3152
Cac8I	GCNNGC	8 cut(s)	225, 267, 453, 1210, 1446, 1584, 2299, 3417
CaiI	CAGNNNCTG	2 cut(s)	1409, 3593
CciI	TCATGA	1 cut(s)	2566
CfoI	GCGC	1 cut(s)	2303
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	5 cut(s)	555, 980, 1339, 1399, 2045
Cfr42I	CCGCGG	1 cut(s)	231
CpoI	CGGWCCG	1 cut(s)	555
CspCI	CAANNNNNGTGG	4 cut(s)	198, 233, 942, 977
CspI	CGGWCCG	1 cut(s)	555
DdeI	CTNAG	7 cut(s)	357, 1059, 1254, 1632, 1848, 1899, 2993
DpnI	GATC	9 cut(s)	272, 1622, 1860, 2061, 2148, 2565, 3060, 3310, 3471
DpnII	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
EaeI	YGGCCR	2 cut(s)	263, 1311
EagI	CGGCCG	1 cut(s)	263
Eam1104I	CTCTTC	7 cut(s)	44, 468, 839, 1544, 2009, 2075, 2171
EarI	CTCTTC	7 cut(s)	44, 468, 839, 1544, 2009, 2075, 2171
Ecl136II	GAGCTC	3 cut(s)	174, 2782, 3536
EclXI	CGGCCG	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	1225, 3264
Eco147I	AGGCCT	2 cut(s)	1026, 2836
Eco24I	GRGCYC	3 cut(s)	176, 2784, 3538
Eco31I	GGTCTC	2 cut(s)	3125, 3176
Eco32I	GATATC	1 cut(s)	1939
Eco47I	GGWCC	4 cut(s)	555, 980, 1339, 1399
Eco52I	CGGCCG	1 cut(s)	263
Eco53kI	GAGCTC	3 cut(s)	174, 2782, 3536
Eco57I	CTGAAG	3 cut(s)	1160, 2033, 3387
Eco72I	CACGTG	1 cut(s)	2159
Eco81I	CCTNAGG	1 cut(s)	1848
Eco88I	CYCGRG	2 cut(s)	169, 2307
EcoICRI	GAGCTC	3 cut(s)	174, 2782, 3536
EcoO109I	RGGNCCY	1 cut(s)	980
EcoRII	CCWGG	2 cut(s)	2272, 2683
EcoRV	GATATC	1 cut(s)	1939
EcoT14I	CCWWGG	2 cut(s)	1225, 3264
EcoT22I	ATGCAT	1 cut(s)	1696
EcoT38I	GRGCYC	3 cut(s)	176, 2784, 3538
ErhI	CCWWGG	2 cut(s)	1225, 3264
Esp3I	CGTCTC	4 cut(s)	157, 365, 743, 1429
FaqI	GGGAC	3 cut(s)	9, 993, 1181
FauI	CCCGC	2 cut(s)	444, 2306
FauNDI	CATATG	2 cut(s)	1720, 3073
FbaI	TGATCA	1 cut(s)	1858
FblI	GTMKAC	2 cut(s)	2796, 3207
FokI	GGATG	9 cut(s)	49, 437, 673, 743, 1183, 1849, 1946, 3261, 3593
FriOI	GRGCYC	3 cut(s)	176, 2784, 3538
FspBI	CTAG	4 cut(s)	408, 2354, 2379, 3473
GlaI	GCGC	1 cut(s)	2302
GsuI	CTGGAG	7 cut(s)	97, 141, 389, 2295, 2821, 3242, 3552
HaeIII	GGCC	9 cut(s)	265, 1026, 1212, 1313, 1846, 2047, 2683, 2719, 2836
HapII	CCGG	4 cut(s)	262, 266, 290, 627
HhaI	GCGC	1 cut(s)	2303
Hin6I	GCGC	1 cut(s)	2301
HinP1I	GCGC	1 cut(s)	2301
HincII	GTYRAC	5 cut(s)	1516, 1649, 1870, 2395, 3411
HindII	GTYRAC	5 cut(s)	1516, 1649, 1870, 2395, 3411
HindIII	AAGCTT	3 cut(s)	881, 2571, 3326
HpaI	GTTAAC	2 cut(s)	2395, 3411
HpaII	CCGG	4 cut(s)	262, 266, 290, 627
Hpy188I	TCNGA	7 cut(s)	559, 895, 1633, 1900, 3081, 3248, 3406
Hpy99I	CGWCG	1 cut(s)	1766
HpyCH4III	ACNGT	8 cut(s)	1305, 1666, 1711, 1830, 1972, 2032, 2924, 3595
HpyCH4IV	ACGT	5 cut(s)	752, 1287, 1308, 1877, 2158
HpyF3I	CTNAG	7 cut(s)	357, 1059, 1254, 1632, 1848, 1899, 2993
HpySE526I	ACGT	5 cut(s)	752, 1287, 1308, 1877, 2158
HspAI	GCGC	1 cut(s)	2301
KpnI	GGTACC	1 cut(s)	2858
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	1858
KspAI	GTTAAC	2 cut(s)	2395, 3411
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
LguI	GCTCTTC	1 cut(s)	1544
LweI	GCATC	5 cut(s)	99, 252, 2453, 2659, 2870
MaeI	CTAG	4 cut(s)	408, 2354, 2379, 3473
MaeII	ACGT	5 cut(s)	752, 1287, 1308, 1877, 2158
MaeIII	GTNAC	4 cut(s)	131, 326, 352, 874
MalI	GATC	9 cut(s)	272, 1622, 1860, 2061, 2148, 2565, 3060, 3310, 3471
MboI	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
MflI	RGATCY	2 cut(s)	1620, 3469
MhlI	GDGCHC	5 cut(s)	176, 225, 2299, 2784, 3538
MlsI	TGGCCA	1 cut(s)	1313
MluNI	TGGCCA	1 cut(s)	1313
MlyI	GAGTC	3 cut(s)	1043, 1070, 1865
MmeI	TCCRAC	4 cut(s)	663, 697, 1622, 2394
Mox20I	TGGCCA	1 cut(s)	1313
Mph1103I	ATGCAT	1 cut(s)	1696
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	1329
MscI	TGGCCA	1 cut(s)	1313
MslI	CAYNNNNRTG	3 cut(s)	1577, 1772, 2501
Msp20I	TGGCCA	1 cut(s)	1313
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	4 cut(s)	262, 266, 290, 627
MspR9I	CCNGG	2 cut(s)	2274, 2685
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	2274, 2685
MvnI	CGCG	6 cut(s)	203, 230, 275, 347, 2301, 3168
NaeI	GCCGGC	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	1225
NdeI	CATATG	2 cut(s)	1720, 3073
NdeII	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
NgoMIV	GCCGGC	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	131, 352
NsiI	ATGCAT	1 cut(s)	1696
NspI	RCATGY	1 cut(s)	1448
NspV	TTCGAA	1 cut(s)	1542
PaeI	GCATGC	1 cut(s)	1448
PaeR7I	CTCGAG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	2566
PaqCI	CACCTGC	2 cut(s)	205, 496
PceI	AGGCCT	2 cut(s)	1026, 2836
PciSI	GCTCTTC	1 cut(s)	1544
PcsI	WCGNNNNNNNCGW	1 cut(s)	749
PctI	GAATGC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	1329
PfeI	GAWTC	7 cut(s)	196, 623, 946, 2225, 3010, 3243, 3302
PflFI	GACNNNGTC	1 cut(s)	3553
PfoI	TCCNGGA	1 cut(s)	2272
Ple19I	CGATCG	1 cut(s)	273
PleI	GAGTC	3 cut(s)	1042, 1069, 1865
PmaCI	CACGTG	1 cut(s)	2159
PmlI	CACGTG	1 cut(s)	2159
PpsI	GAGTC	3 cut(s)	1042, 1069, 1865
Ppu21I	YACGTR	2 cut(s)	1309, 2159
PpuMI	RGGWCCY	1 cut(s)	980
Psp124BI	GAGCTC	3 cut(s)	176, 2784, 3538
Psp5II	RGGWCCY	1 cut(s)	980
Psp6I	CCWGG	2 cut(s)	2272, 2683
PspCI	CACGTG	1 cut(s)	2159
PspGI	CCWGG	2 cut(s)	2272, 2683
PspPI	GGNCC	5 cut(s)	555, 980, 1339, 1399, 2045
PspPPI	RGGWCCY	1 cut(s)	980
PspXI	VCTCGAGB	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	2016, 2048
PstI	CTGCAG	3 cut(s)	1050, 3048, 3163
PstNI	CAGNNNCTG	2 cut(s)	1409, 3593
PsuI	RGATCY	2 cut(s)	1620, 3469
PsyI	GACNNNGTC	1 cut(s)	3553
PvuI	CGATCG	1 cut(s)	273
RgaI	GCGATCGC	1 cut(s)	273
RseI	CAYNNNNRTG	3 cut(s)	1577, 1772, 2501
Rsr2I	CGGWCCG	1 cut(s)	555
RsrII	CGGWCCG	1 cut(s)	555
SacI	GAGCTC	3 cut(s)	176, 2784, 3538
SacII	CCGCGG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	1544
Sau3AI	GATC	9 cut(s)	270, 1620, 1858, 2059, 2146, 2563, 3058, 3308, 3469
Sau96I	GGNCC	5 cut(s)	555, 980, 1339, 1399, 2045
SchI	GAGTC	3 cut(s)	1043, 1070, 1865
ScrFI	CCNGG	2 cut(s)	2274, 2685
SduI	GDGCHC	5 cut(s)	176, 225, 2299, 2784, 3538
SfaAI	GCGATCGC	1 cut(s)	273
SfaNI	GCATC	5 cut(s)	99, 252, 2453, 2659, 2870
SfcI	CTRYAG	6 cut(s)	1046, 2364, 2838, 2920, 3044, 3159
Sfr274I	CTCGAG	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	1542
SgfI	GCGATCGC	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	4 cut(s)	555, 980, 1339, 1399
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	3 cut(s)	1577, 1772, 2501
SmlI	CTYRAG	9 cut(s)	169, 1028, 1487, 2373, 2406, 2654, 2724, 3116, 3443
SmoI	CTYRAG	9 cut(s)	169, 1028, 1487, 2373, 2406, 2654, 2724, 3116, 3443
SphI	GCATGC	1 cut(s)	1448
SseBI	AGGCCT	2 cut(s)	1026, 2836
SspI	AATATT	1 cut(s)	1508
SspMI	CTAG	4 cut(s)	408, 2354, 2379, 3473
SstI	GAGCTC	3 cut(s)	176, 2784, 3538
StuI	AGGCCT	2 cut(s)	1026, 2836
StyD4I	CCNGG	2 cut(s)	2272, 2683
StyI	CCWWGG	2 cut(s)	1225, 3264
TaaI	ACNGT	8 cut(s)	1305, 1666, 1711, 1830, 1972, 2032, 2924, 3595
TaiI	ACGT	5 cut(s)	755, 1290, 1311, 1880, 2161
TaqI	TCGA	6 cut(s)	170, 852, 1542, 2533, 2898, 3570
TaqII	GACCGA	1 cut(s)	1356
TatI	WGTACW	4 cut(s)	1114, 1476, 1569, 3251
TauI	GCSGC	7 cut(s)	90, 230, 278, 287, 299, 380, 2683
TfiI	GAWTC	7 cut(s)	196, 623, 946, 2225, 3010, 3243, 3302
TscAI	CASTG	6 cut(s)	1410, 1594, 1949, 2062, 2364, 3598
TseFI	GTSAC	2 cut(s)	131, 352
Tsp45I	GTSAC	2 cut(s)	131, 352
TspGWI	ACGGA	6 cut(s)	11, 246, 862, 1013, 1634, 1946
TspRI	CASTG	6 cut(s)	1410, 1594, 1949, 2062, 2364, 3598
Tth111I	GACNNNGTC	1 cut(s)	3553
VpaK11BI	GGWCC	4 cut(s)	555, 980, 1339, 1399
XapI	RAATTY	5 cut(s)	126, 1088, 1639, 1745, 2540
XceI	RCATGY	1 cut(s)	1448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1223
XhoI	CTCGAG	1 cut(s)	169
XmiI	GTMKAC	2 cut(s)	2796, 3207
XmnI	GAANNNNTTC	1 cut(s)	1329
XspI	CTAG	4 cut(s)	408, 2354, 2379, 3473
Zsp2I	ATGCAT	1 cut(s)	1696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.