ATPase family associated with various cellular activities (AAA)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04340 |
| fragaria_vesca | FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 |
| malus_domestica | MD04G1232400.v1.1 |
| prunus_persica | Prupe.6G352000_v2.0.a1 |
| pyrus_communis | pycom04g20580 |
| rosa_chinensis | RchiOBHm_Chr3g0449311 |
| rosa_laevigata | RLG00000025840 |
| rosa_multiflora | Rmu_sc0007719.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00427310 |
| rosa_rugosa | Rorug02G0619600 |
| rosa_samantha | Rh3AG017600 Rh3BG017700 Rh3CG016700 Rh3DG018000 |
| rosa_wichuraiana | Rw1G017600 Rw3G001350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3585 |
| AarI | CACCTGC | 2 cut(s) | 208, 499 |
| Acc36I | ACCTGC | 5 cut(s) | 208, 499, 2869, 3054, 3155 |
| Acc65I | GGTACC | 1 cut(s) | 2857 |
| AccB1I | GGYRCC | 4 cut(s) | 2297, 2386, 2488, 2857 |
| AccI | GTMKAC | 3 cut(s) | 2799, 3210, 3506 |
| AccII | CGCG | 8 cut(s) | 80, 206, 233, 278, 287, 350, 2304, 3171 |
| AclWI | GGATC | 8 cut(s) | 1350, 1618, 1631, 2057, 2144, 2574, 3559, 3681 |
| AcoI | YGGCCR | 2 cut(s) | 266, 1314 |
| AcsI | RAATTY | 5 cut(s) | 98, 1091, 1642, 1748, 2543 |
| AcuI | CTGAAG | 3 cut(s) | 1163, 2036, 3390 |
| AcvI | CACGTG | 1 cut(s) | 2162 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 636, 2682, 3382 |
| AflIII | ACRYGT | 1 cut(s) | 2159 |
| AjnI | CCWGG | 2 cut(s) | 2275, 2686 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3125, 3157 |
| Alw21I | GWGCWC | 4 cut(s) | 179, 228, 2787, 3742 |
| Alw26I | GTCTC | 9 cut(s) | 160, 368, 746, 1071, 1432, 1683, 3128, 3179, 3746 |
| AlwI | GGATC | 8 cut(s) | 1350, 1618, 1631, 2057, 2144, 2574, 3559, 3681 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1412, 3797 |
| Ama87I | CYCGRG | 2 cut(s) | 172, 2310 |
| AoxI | GGCC | 9 cut(s) | 266, 1027, 1213, 1314, 1847, 2048, 2684, 2720, 2837 |
| ApoI | RAATTY | 5 cut(s) | 98, 1091, 1642, 1748, 2543 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 138, 170 |
| AsiSI | GCGATCGC | 1 cut(s) | 276 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1332 |
| Asp718I | GGTACC | 1 cut(s) | 2857 |
| AspLEI | GCGC | 2 cut(s) | 82, 2306 |
| AspS9I | GGNCC | 5 cut(s) | 558, 983, 1402, 2048, 3464 |
| AsuII | TTCGAA | 1 cut(s) | 1545 |
| AvaI | CYCGRG | 2 cut(s) | 172, 2310 |
| AvaII | GGWCC | 4 cut(s) | 558, 983, 1402, 3464 |
| AxyI | CCTNAGG | 1 cut(s) | 1851 |
| BaeGI | GKGCMC | 1 cut(s) | 2302 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1701, 1734 |
| BalI | TGGCCA | 1 cut(s) | 1316 |
| BamHI | GGATCC | 1 cut(s) | 1623 |
| BanI | GGYRCC | 4 cut(s) | 2297, 2386, 2488, 2857 |
| BanII | GRGCYC | 3 cut(s) | 179, 2787, 3742 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2697, 2729 |
| BbrPI | CACGTG | 1 cut(s) | 2162 |
| BbsI | GAAGAC | 2 cut(s) | 1712, 3048 |
| Bbv12I | GWGCWC | 4 cut(s) | 179, 228, 2787, 3742 |
| BccI | CCATC | 9 cut(s) | 658, 1559, 1834, 2600, 2618, 2632, 3436, 3612, 3625 |
| BceAI | ACGGC | 2 cut(s) | 393, 1409 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 235, 269, 2881, 2915 |
| BciT130I | CCWGG | 2 cut(s) | 2277, 2688 |
| BciVI | GTATCC | 2 cut(s) | 1821, 1979 |
| BclI | TGATCA | 1 cut(s) | 1861 |
| BcoDI | GTCTC | 9 cut(s) | 160, 368, 746, 1071, 1432, 1683, 3128, 3179, 3746 |
| BfaI | CTAG | 4 cut(s) | 411, 2357, 2382, 3677 |
| BfmI | CTRYAG | 6 cut(s) | 1049, 2367, 2841, 2923, 3047, 3162 |
| BfuAI | ACCTGC | 5 cut(s) | 208, 499, 2869, 3054, 3155 |
| BfuI | GTATCC | 2 cut(s) | 1821, 1979 |
| BlpI | GCTNAGC | 1 cut(s) | 2996 |
| Bme1390I | CCNGG | 2 cut(s) | 2277, 2688 |
| Bme18I | GGWCC | 4 cut(s) | 558, 983, 1402, 3464 |
| BmeT110I | CYCGRG | 2 cut(s) | 172, 2310 |
| BmgT120I | GGNCC | 5 cut(s) | 558, 983, 1402, 2048, 3464 |
| BmrFI | CCNGG | 2 cut(s) | 2277, 2688 |
| BmrI | ACTGGG | 1 cut(s) | 1400 |
| BmsI | GCATC | 5 cut(s) | 102, 255, 2456, 2662, 2873 |
| BmuI | ACTGGG | 1 cut(s) | 1400 |
| BpiI | GAAGAC | 2 cut(s) | 1712, 3048 |
| BpmI | CTGGAG | 7 cut(s) | 100, 144, 392, 2298, 2824, 3245, 3756 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1257 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2996 |
| Bpu14I | TTCGAA | 1 cut(s) | 1545 |
| BpuEI | CTTGAG | 8 cut(s) | 1052, 1475, 2361, 2394, 2642, 2712, 3140, 3668 |
| Bsa29I | ATCGAT | 1 cut(s) | 2790 |
| BsaAI | YACGTR | 1 cut(s) | 2162 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1622 |
| BsaI | GGTCTC | 2 cut(s) | 3128, 3179 |
| BsaJI | CCNNGG | 4 cut(s) | 231, 1228, 2309, 3267 |
| BsaWI | WCCGGW | 1 cut(s) | 629 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 636, 2682, 3382 |
| Bse118I | RCCGGY | 1 cut(s) | 268 |
| Bse1I | ACTGG | 5 cut(s) | 1406, 1443, 2367, 2653, 2807 |
| Bse21I | CCTNAGG | 1 cut(s) | 1851 |
| Bse3DI | GCAATG | 5 cut(s) | 1482, 3097, 3177, 3354, 3505 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1622 |
| BseBI | CCWGG | 2 cut(s) | 2277, 2688 |
| BseCI | ATCGAT | 1 cut(s) | 2790 |
| BseDI | CCNNGG | 4 cut(s) | 231, 1228, 2309, 3267 |
| BseGI | GGATG | 9 cut(s) | 433, 669, 739, 1179, 1845, 1942, 3257, 3447, 3790 |
| BseJI | GATNNNNATC | 1 cut(s) | 1622 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 636, 2682, 3382 |
| BseMI | GCAATG | 5 cut(s) | 1482, 3097, 3177, 3354, 3505 |
| BseMII | CTCAG | 4 cut(s) | 1053, 1626, 1842, 1893 |
| BseNI | ACTGG | 5 cut(s) | 1406, 1443, 2367, 2653, 2807 |
| BseSI | GKGCMC | 1 cut(s) | 2302 |
| BseX3I | CGGCCG | 1 cut(s) | 266 |
| BsgI | GTGCAG | 2 cut(s) | 527, 839 |
| Bsh1236I | CGCG | 8 cut(s) | 80, 206, 233, 278, 287, 350, 2304, 3171 |
| Bsh1285I | CGRYCG | 4 cut(s) | 210, 269, 276, 285 |
| BshFI | GGCC | 9 cut(s) | 268, 1029, 1215, 1316, 1849, 2050, 2686, 2722, 2839 |
| BshNI | GGYRCC | 4 cut(s) | 2297, 2386, 2488, 2857 |
| BshVI | ATCGAT | 1 cut(s) | 2790 |
| BsiEI | CGRYCG | 4 cut(s) | 210, 269, 276, 285 |
| BsiHKAI | GWGCWC | 4 cut(s) | 179, 228, 2787, 3742 |
| BsiHKCI | CYCGRG | 2 cut(s) | 172, 2310 |
| BsiSI | CCGG | 4 cut(s) | 265, 269, 293, 630 |
| BslFI | GGGAC | 4 cut(s) | 9, 996, 1184, 3477 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 636, 2682, 3382 |
| BsmAI | GTCTC | 9 cut(s) | 160, 368, 746, 1071, 1432, 1683, 3128, 3179, 3746 |
| BsmBI | CGTCTC | 4 cut(s) | 160, 368, 746, 1432 |
| BsmFI | GGGAC | 4 cut(s) | 9, 996, 1184, 3477 |
| BsnI | GGCC | 9 cut(s) | 268, 1029, 1215, 1316, 1849, 2050, 2686, 2722, 2839 |
| Bso31I | GGTCTC | 2 cut(s) | 3128, 3179 |
| BsoBI | CYCGRG | 2 cut(s) | 172, 2310 |
| Bsp119I | TTCGAA | 1 cut(s) | 1545 |
| Bsp1286I | GDGCHC | 5 cut(s) | 179, 228, 2302, 2787, 3742 |
| Bsp1407I | TGTACA | 4 cut(s) | 1117, 1479, 1572, 3254 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2996 |
| Bsp19I | CCATGG | 1 cut(s) | 1228 |
| BspANI | GGCC | 9 cut(s) | 268, 1029, 1215, 1316, 1849, 2050, 2686, 2722, 2839 |
| BspCNI | CTCAG | 4 cut(s) | 1054, 1627, 1843, 1894 |
| BspDI | ATCGAT | 1 cut(s) | 2790 |
| BspFNI | CGCG | 8 cut(s) | 80, 206, 233, 278, 287, 350, 2304, 3171 |
| BspHI | TCATGA | 2 cut(s) | 2569, 3742 |
| BspMAI | CTGCAG | 3 cut(s) | 1053, 3051, 3166 |
| BspMI | ACCTGC | 5 cut(s) | 208, 499, 2869, 3054, 3155 |
| BspPI | GGATC | 8 cut(s) | 1350, 1618, 1631, 2057, 2144, 2574, 3559, 3681 |
| BspQI | GCTCTTC | 1 cut(s) | 1547 |
| BspT104I | TTCGAA | 1 cut(s) | 1545 |
| BspT107I | GGYRCC | 4 cut(s) | 2297, 2386, 2488, 2857 |
| BspTNI | GGTCTC | 2 cut(s) | 3128, 3179 |
| BsrDI | GCAATG | 5 cut(s) | 1482, 3097, 3177, 3354, 3505 |
| BsrFI | RCCGGY | 1 cut(s) | 268 |
| BsrGI | TGTACA | 4 cut(s) | 1117, 1479, 1572, 3254 |
| BsrI | ACTGG | 5 cut(s) | 1406, 1443, 2367, 2653, 2807 |
| BssAI | RCCGGY | 1 cut(s) | 268 |
| BssECI | CCNNGG | 4 cut(s) | 231, 1228, 2309, 3267 |
| BssT1I | CCWWGG | 2 cut(s) | 1228, 3267 |
| Bst2UI | CCWGG | 2 cut(s) | 2277, 2688 |
| Bst4CI | ACNGT | 6 cut(s) | 1308, 1669, 1833, 1975, 2035, 2927 |
| Bst6I | CTCTTC | 7 cut(s) | 44, 471, 842, 1547, 2012, 2078, 2174 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 223, 817 |
| BstAUI | TGTACA | 4 cut(s) | 1117, 1479, 1572, 3254 |
| BstBAI | YACGTR | 1 cut(s) | 2162 |
| BstBI | TTCGAA | 1 cut(s) | 1545 |
| BstC8I | GCNNGC | 9 cut(s) | 228, 270, 456, 759, 1213, 1449, 1587, 2302, 3420 |
| BstDEI | CTNAG | 6 cut(s) | 1062, 1257, 1635, 1851, 1902, 2996 |
| BstDSI | CCRYGG | 2 cut(s) | 231, 1228 |
| BstF5I | GGATG | 9 cut(s) | 433, 669, 739, 1179, 1845, 1942, 3257, 3447, 3790 |
| BstFNI | CGCG | 8 cut(s) | 80, 206, 233, 278, 287, 350, 2304, 3171 |
| BstHHI | GCGC | 2 cut(s) | 82, 2306 |
| BstMAI | GTCTC | 9 cut(s) | 160, 368, 746, 1071, 1432, 1683, 3128, 3179, 3746 |
| BstMCI | CGRYCG | 4 cut(s) | 210, 269, 276, 285 |
| BstNI | CCWGG | 2 cut(s) | 2277, 2688 |
| BstNSI | RCATGY | 1 cut(s) | 1451 |
| BstSCI | CCNGG | 2 cut(s) | 2275, 2686 |
| BstSFI | CTRYAG | 6 cut(s) | 1049, 2367, 2841, 2923, 3047, 3162 |
| BstSLI | GKGCMC | 1 cut(s) | 2302 |
| BstUI | CGCG | 8 cut(s) | 80, 206, 233, 278, 287, 350, 2304, 3171 |
| BstV2I | GAAGAC | 2 cut(s) | 1712, 3048 |
| BstX2I | RGATCY | 3 cut(s) | 1623, 3564, 3673 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2485, 3237 |
| BstYI | RGATCY | 3 cut(s) | 1623, 3564, 3673 |
| BstZI | CGGCCG | 1 cut(s) | 266 |
| Bsu15I | ATCGAT | 1 cut(s) | 2790 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1851 |
| BsuI | GTATCC | 2 cut(s) | 1821, 1979 |
| BsuRI | GGCC | 9 cut(s) | 268, 1029, 1215, 1316, 1849, 2050, 2686, 2722, 2839 |
| BsuTUI | ATCGAT | 1 cut(s) | 2790 |
| BtgI | CCRYGG | 2 cut(s) | 231, 1228 |
| BtgZI | GCGATG | 1 cut(s) | 1113 |
| BtsCI | GGATG | 9 cut(s) | 433, 669, 739, 1179, 1845, 1942, 3257, 3447, 3790 |
| BtsIMutI | CAGTG | 3 cut(s) | 1413, 2058, 2360 |
| BveI | ACCTGC | 5 cut(s) | 208, 499, 2869, 3054, 3155 |
| Cac8I | GCNNGC | 9 cut(s) | 228, 270, 456, 759, 1213, 1449, 1587, 2302, 3420 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1412, 3797 |
| CciI | TCATGA | 2 cut(s) | 2569, 3742 |
| CfoI | GCGC | 2 cut(s) | 82, 2306 |
| Cfr10I | RCCGGY | 1 cut(s) | 268 |
| Cfr13I | GGNCC | 5 cut(s) | 558, 983, 1402, 2048, 3464 |
| Cfr42I | CCGCGG | 1 cut(s) | 234 |
| ClaI | ATCGAT | 1 cut(s) | 2790 |
| CpoI | CGGWCCG | 1 cut(s) | 558 |
| CseI | GACGC | 2 cut(s) | 763, 3492 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 201, 236 |
| CspI | CGGWCCG | 1 cut(s) | 558 |
| DdeI | CTNAG | 6 cut(s) | 1062, 1257, 1635, 1851, 1902, 2996 |
| EaeI | YGGCCR | 2 cut(s) | 266, 1314 |
| EagI | CGGCCG | 1 cut(s) | 266 |
| Eam1104I | CTCTTC | 7 cut(s) | 44, 471, 842, 1547, 2012, 2078, 2174 |
| EarI | CTCTTC | 7 cut(s) | 44, 471, 842, 1547, 2012, 2078, 2174 |
| Ecl136II | GAGCTC | 3 cut(s) | 177, 2785, 3740 |
| EclXI | CGGCCG | 1 cut(s) | 266 |
| Eco130I | CCWWGG | 2 cut(s) | 1228, 3267 |
| Eco147I | AGGCCT | 1 cut(s) | 2839 |
| Eco24I | GRGCYC | 3 cut(s) | 179, 2787, 3742 |
| Eco31I | GGTCTC | 2 cut(s) | 3128, 3179 |
| Eco32I | GATATC | 1 cut(s) | 1942 |
| Eco47I | GGWCC | 4 cut(s) | 558, 983, 1402, 3464 |
| Eco52I | CGGCCG | 1 cut(s) | 266 |
| Eco53kI | GAGCTC | 3 cut(s) | 177, 2785, 3740 |
| Eco57I | CTGAAG | 3 cut(s) | 1163, 2036, 3390 |
| Eco72I | CACGTG | 1 cut(s) | 2162 |
| Eco81I | CCTNAGG | 1 cut(s) | 1851 |
| Eco88I | CYCGRG | 2 cut(s) | 172, 2310 |
| EcoICRI | GAGCTC | 3 cut(s) | 177, 2785, 3740 |
| EcoO109I | RGGNCCY | 2 cut(s) | 983, 3464 |
| EcoRII | CCWGG | 2 cut(s) | 2275, 2686 |
| EcoRV | GATATC | 1 cut(s) | 1942 |
| EcoT14I | CCWWGG | 2 cut(s) | 1228, 3267 |
| EcoT22I | ATGCAT | 1 cut(s) | 1699 |
| EcoT38I | GRGCYC | 3 cut(s) | 179, 2787, 3742 |
| ErhI | CCWWGG | 2 cut(s) | 1228, 3267 |
| Esp3I | CGTCTC | 4 cut(s) | 160, 368, 746, 1432 |
| FaqI | GGGAC | 4 cut(s) | 9, 996, 1184, 3477 |
| FauI | CCCGC | 3 cut(s) | 447, 839, 2309 |
| FauNDI | CATATG | 1 cut(s) | 3076 |
| FbaI | TGATCA | 1 cut(s) | 1861 |
| FblI | GTMKAC | 3 cut(s) | 2799, 3210, 3506 |
| FokI | GGATG | 9 cut(s) | 440, 676, 746, 1186, 1852, 1949, 3264, 3454, 3797 |
| FriOI | GRGCYC | 3 cut(s) | 179, 2787, 3742 |
| FspBI | CTAG | 4 cut(s) | 411, 2357, 2382, 3677 |
| GlaI | GCGC | 2 cut(s) | 81, 2305 |
| GsuI | CTGGAG | 7 cut(s) | 100, 144, 392, 2298, 2824, 3245, 3756 |
| HaeIII | GGCC | 9 cut(s) | 268, 1029, 1215, 1316, 1849, 2050, 2686, 2722, 2839 |
| HapII | CCGG | 4 cut(s) | 265, 269, 293, 630 |
| HgaI | GACGC | 2 cut(s) | 763, 3492 |
| HhaI | GCGC | 2 cut(s) | 82, 2306 |
| Hin6I | GCGC | 2 cut(s) | 80, 2304 |
| HinP1I | GCGC | 2 cut(s) | 80, 2304 |
| HincII | GTYRAC | 5 cut(s) | 1519, 1652, 1873, 2398, 3414 |
| HindII | GTYRAC | 5 cut(s) | 1519, 1652, 1873, 2398, 3414 |
| HindIII | AAGCTT | 1 cut(s) | 884 |
| HpaI | GTTAAC | 2 cut(s) | 2398, 3414 |
| HpaII | CCGG | 4 cut(s) | 265, 269, 293, 630 |
| Hpy188I | TCNGA | 7 cut(s) | 562, 898, 1636, 1903, 3084, 3251, 3409 |
| Hpy99I | CGWCG | 2 cut(s) | 1769, 3618 |
| HpyCH4III | ACNGT | 6 cut(s) | 1308, 1669, 1833, 1975, 2035, 2927 |
| HpyCH4IV | ACGT | 2 cut(s) | 1880, 2161 |
| HpyF3I | CTNAG | 6 cut(s) | 1062, 1257, 1635, 1851, 1902, 2996 |
| HpySE526I | ACGT | 2 cut(s) | 1880, 2161 |
| HspAI | GCGC | 2 cut(s) | 80, 2304 |
| KpnI | GGTACC | 1 cut(s) | 2861 |
| KroI | GCCGGC | 1 cut(s) | 268 |
| KroNI | GCCGGC | 1 cut(s) | 270 |
| Ksp22I | TGATCA | 1 cut(s) | 1861 |
| KspAI | GTTAAC | 2 cut(s) | 2398, 3414 |
| KspI | CCGCGG | 1 cut(s) | 234 |
| LguI | GCTCTTC | 1 cut(s) | 1547 |
| LweI | GCATC | 5 cut(s) | 102, 255, 2456, 2662, 2873 |
| MaeI | CTAG | 4 cut(s) | 411, 2357, 2382, 3677 |
| MaeII | ACGT | 2 cut(s) | 1880, 2161 |
| MaeIII | GTNAC | 3 cut(s) | 134, 329, 877 |
| MflI | RGATCY | 3 cut(s) | 1623, 3564, 3673 |
| MhlI | GDGCHC | 5 cut(s) | 179, 228, 2302, 2787, 3742 |
| MlsI | TGGCCA | 1 cut(s) | 1316 |
| MluNI | TGGCCA | 1 cut(s) | 1316 |
| MlyI | GAGTC | 3 cut(s) | 1046, 1073, 1868 |
| MmeI | TCCRAC | 4 cut(s) | 666, 1625, 2397, 2850 |
| Mox20I | TGGCCA | 1 cut(s) | 1316 |
| Mph1103I | ATGCAT | 1 cut(s) | 1699 |
| MroNI | GCCGGC | 1 cut(s) | 268 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1332 |
| MscI | TGGCCA | 1 cut(s) | 1316 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1580, 1775, 2504, 3498, 3537 |
| Msp20I | TGGCCA | 1 cut(s) | 1316 |
| MspA1I | CMGCKG | 2 cut(s) | 233, 3797 |
| MspI | CCGG | 4 cut(s) | 265, 269, 293, 630 |
| MspR9I | CCNGG | 2 cut(s) | 2277, 2688 |
| MvaI | CCWGG | 2 cut(s) | 2277, 2688 |
| MvnI | CGCG | 8 cut(s) | 80, 206, 233, 278, 287, 350, 2304, 3171 |
| NaeI | GCCGGC | 1 cut(s) | 270 |
| NcoI | CCATGG | 1 cut(s) | 1228 |
| NdeI | CATATG | 1 cut(s) | 3076 |
| NgoMIV | GCCGGC | 1 cut(s) | 268 |
| NmuCI | GTSAC | 1 cut(s) | 134 |
| NsiI | ATGCAT | 1 cut(s) | 1699 |
| NspI | RCATGY | 1 cut(s) | 1451 |
| NspV | TTCGAA | 1 cut(s) | 1545 |
| PaeI | GCATGC | 1 cut(s) | 1451 |
| PaeR7I | CTCGAG | 1 cut(s) | 172 |
| PagI | TCATGA | 2 cut(s) | 2569, 3742 |
| PaqCI | CACCTGC | 2 cut(s) | 208, 499 |
| PceI | AGGCCT | 1 cut(s) | 2839 |
| PciSI | GCTCTTC | 1 cut(s) | 1547 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 953, 3613 |
| PdiI | GCCGGC | 1 cut(s) | 270 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1332 |
| PfeI | GAWTC | 7 cut(s) | 199, 626, 949, 2228, 3013, 3246, 3305 |
| PflFI | GACNNNGTC | 1 cut(s) | 3757 |
| PfoI | TCCNGGA | 1 cut(s) | 2275 |
| Ple19I | CGATCG | 1 cut(s) | 276 |
| PleI | GAGTC | 3 cut(s) | 1045, 1072, 1868 |
| PmaCI | CACGTG | 1 cut(s) | 2162 |
| PmlI | CACGTG | 1 cut(s) | 2162 |
| PpsI | GAGTC | 3 cut(s) | 1045, 1072, 1868 |
| Ppu21I | YACGTR | 1 cut(s) | 2162 |
| PpuMI | RGGWCCY | 2 cut(s) | 983, 3464 |
| PsiI | TTATAA | 1 cut(s) | 3585 |
| Psp124BI | GAGCTC | 3 cut(s) | 179, 2787, 3742 |
| Psp5II | RGGWCCY | 2 cut(s) | 983, 3464 |
| Psp6I | CCWGG | 2 cut(s) | 2275, 2686 |
| PspCI | CACGTG | 1 cut(s) | 2162 |
| PspGI | CCWGG | 2 cut(s) | 2275, 2686 |
| PspPI | GGNCC | 5 cut(s) | 558, 983, 1402, 2048, 3464 |
| PspPPI | RGGWCCY | 2 cut(s) | 983, 3464 |
| PspXI | VCTCGAGB | 1 cut(s) | 172 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2019, 2051 |
| PstI | CTGCAG | 3 cut(s) | 1053, 3051, 3166 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1412, 3797 |
| PsuI | RGATCY | 3 cut(s) | 1623, 3564, 3673 |
| PsyI | GACNNNGTC | 1 cut(s) | 3757 |
| PvuI | CGATCG | 1 cut(s) | 276 |
| RgaI | GCGATCGC | 1 cut(s) | 276 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1580, 1775, 2504, 3498, 3537 |
| Rsr2I | CGGWCCG | 1 cut(s) | 558 |
| RsrII | CGGWCCG | 1 cut(s) | 558 |
| SacI | GAGCTC | 3 cut(s) | 179, 2787, 3742 |
| SacII | CCGCGG | 1 cut(s) | 234 |
| SapI | GCTCTTC | 1 cut(s) | 1547 |
| Sau96I | GGNCC | 5 cut(s) | 558, 983, 1402, 2048, 3464 |
| SchI | GAGTC | 3 cut(s) | 1046, 1073, 1868 |
| ScrFI | CCNGG | 2 cut(s) | 2277, 2688 |
| SduI | GDGCHC | 5 cut(s) | 179, 228, 2302, 2787, 3742 |
| SfaAI | GCGATCGC | 1 cut(s) | 276 |
| SfaNI | GCATC | 5 cut(s) | 102, 255, 2456, 2662, 2873 |
| SfcI | CTRYAG | 6 cut(s) | 1049, 2367, 2841, 2923, 3047, 3162 |
| Sfr274I | CTCGAG | 1 cut(s) | 172 |
| Sfr303I | CCGCGG | 1 cut(s) | 234 |
| SfuI | TTCGAA | 1 cut(s) | 1545 |
| SgfI | GCGATCGC | 1 cut(s) | 276 |
| SgrBI | CCGCGG | 1 cut(s) | 234 |
| SinI | GGWCC | 4 cut(s) | 558, 983, 1402, 3464 |
| SlaI | CTCGAG | 1 cut(s) | 172 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1580, 1775, 2504, 3498, 3537 |
| SmlI | CTYRAG | 9 cut(s) | 172, 1031, 1490, 2376, 2409, 2657, 2727, 3119, 3647 |
| SmoI | CTYRAG | 9 cut(s) | 172, 1031, 1490, 2376, 2409, 2657, 2727, 3119, 3647 |
| SphI | GCATGC | 1 cut(s) | 1451 |
| SseBI | AGGCCT | 1 cut(s) | 2839 |
| SspI | AATATT | 1 cut(s) | 1511 |
| SspMI | CTAG | 4 cut(s) | 411, 2357, 2382, 3677 |
| SstI | GAGCTC | 3 cut(s) | 179, 2787, 3742 |
| StuI | AGGCCT | 1 cut(s) | 2839 |
| StyD4I | CCNGG | 2 cut(s) | 2275, 2686 |
| StyI | CCWWGG | 2 cut(s) | 1228, 3267 |
| TaaI | ACNGT | 6 cut(s) | 1308, 1669, 1833, 1975, 2035, 2927 |
| TaiI | ACGT | 2 cut(s) | 1883, 2164 |
| TatI | WGTACW | 5 cut(s) | 1117, 1308, 1479, 1572, 3254 |
| TauI | GCSGC | 9 cut(s) | 93, 233, 281, 290, 299, 302, 383, 2686, 3797 |
| TfiI | GAWTC | 7 cut(s) | 199, 626, 949, 2228, 3013, 3246, 3305 |
| TscAI | CASTG | 3 cut(s) | 1413, 2065, 2367 |
| TseFI | GTSAC | 1 cut(s) | 134 |
| Tsp45I | GTSAC | 1 cut(s) | 134 |
| TspGWI | ACGGA | 6 cut(s) | 11, 249, 865, 1016, 1949, 3454 |
| TspRI | CASTG | 3 cut(s) | 1413, 2065, 2367 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3757 |
| VpaK11BI | GGWCC | 4 cut(s) | 558, 983, 1402, 3464 |
| XapI | RAATTY | 5 cut(s) | 98, 1091, 1642, 1748, 2543 |
| XceI | RCATGY | 1 cut(s) | 1451 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1226 |
| XhoI | CTCGAG | 1 cut(s) | 172 |
| XmiI | GTMKAC | 3 cut(s) | 2799, 3210, 3506 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1332 |
| XspI | CTAG | 4 cut(s) | 411, 2357, 2382, 3677 |
| Zsp2I | ATGCAT | 1 cut(s) | 1699 |