Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007719.1

Orthogroup ID

OG0011329

Physical Location & Seq

Genomic Coordinates Forward (+)

6499 .. 15145

Gene Structure 8647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007719.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3801 bp

atggactccattctctctctccgtcccctccccaatctcttcacccctcaccgcaaccccccctcctcacttttcacgcccaaccgccgcatcaaattccaaaccaaatcctccagaacctctccaattcgtcacactcccaaaccattcgtctctccagaaccttcctcgagctcaaagcacgaagaaagcccgattctcgcggtcgcaaggcaggtggtgctcgccgcggtctgtttcggcatcggcttcgctccgttccggccggcgatcgcggcggtcgcggcggcggtggtggaggagaagaaggaggtgagttacgagagtgagggctacgcggaggtcagtaagaggctgctggagacggcggcggtgctggtgaggagagcggaggaggctagggttgggaagggggatgtgaaggcggtggaggaggcgtggcgggcggtgagggcgaagaaggaagagttgcaaggggagatattgagtgcggtgcaggtggagctgacgaggttgaggaggagcaaggaggggctggtgaggcggtccgatgagattgtggtggaggtggtgaaggcgaggagggagattgagaaggcgttgttgcgagatgattccggtaagggggaggggaaggagagggtggagaggatggaggagagggtggggaggttggaggaggagtacagtgaggtttgggagagtgtgggagagattgaggatgagatttcgaggagggagacgctggcattgagctatggagttagggagctttgttttattgagagggagtgtgagcagttggtgcagagttttacccgccaaatgaggaggaagagtgttgaaagtgtgccaaaaaaatccgttaccaagctttctaaatctgatatacagaaagatttggaaaacacgcaaagaagtcttttggagcaaacgattctgccgaatgttgtggaagttgatgatgtgggacctttgtttacttcaacggagtttgctcaaaatataaaaaatggccttgaggagtcaaggaagctgcagataaaggctgagtctcaaataaggaagaaagtgaaaaaatttggcgatgaaaagcggtatcttgtacaaacaccagaagatgaggtgctgaagggctttccagaagttgagttgaagtggatgtttggagagaaggaggttgtcgtccctaaagctgctggcctccatttataccatgggtggaagaagtggcgtgaagaagctaaggcagacctgaaaagaaatctcatagaagacgttgattttggtaaacagtacgtggccaaaagacaggaactaattcttctggaccgagataggctggtgtcaaagacttggtacaatgaggaaaaaaataggtgggaaatggacccagtggctgttccttttgccgtctcaaagaaactggtggagcatgctcgtattaggcatgattgggctgccatgtacattgcactcaagggtgatgacaaggaatattatgttgacattaaggaatatgaaatgctcttcgaagattttggagggtttgatgggttgtacatgaaaatgcttgcctgtggtattccaactgctgttcacctgatgtggatccctttgtctgagttgaatttccgtcaacaatttctcttgactgtcaggctgtctcaccaatgtcttaatgcattgtggaagacaacaatagtatcgtatgcaagagattgggttatgcagaaatttagaaatataaacgacgacataatgatgacaatagtgtttcctattgtggagcttatactaccctactatgtaaggatacagttggggatggcatggcctgaggaaattgatcaagctgttgactcaacgtggtacttgaaatggcaatctgaggcagaaacaaattacaaatccagaaaaacggatgatatccaatggtacatttggtttctcattagaaccgttgcgtatggatacattgtgtttcatgtttttggtttcctgaagagagaagtaccaactgttcttggttatgggccaatacgcactgatccaaacagggataagttgaagagagtgaaatactatcttaattatcgggtgaggaaagttaaacagaacaaaaaggctggtgttgatcctataacacgtgcttttgaccaaatgaagagggtaaagaacccaccaataccattgaaggactttgcgagtattgaatccatgaaagaggaaatcaatgaagttgtggcatttcttaaaaatcctggagcctttcaagaaatgggtgcccgcgcacctcggggagttctaattgtgggtgagaggggaacaggaaagacatctctagcactggctatagctgctcaagctagggtgcctgttgttaacattaaagctcaagagttggaggctggactatgggttgggcaaagtgcatctaatgttagagagctgtttcaaacagccagagaattggcacctgttatcatatttgtggaggattttgacctctttgctggtgttcgaggcaaattcattcacactaaaaatcaggatcatgaagcttttatcaatcaactgcttgtggaacttgatgggtttgagaaacaagatggggttgtattgatggctactactggaaatctcaagcaaattgatgatgccttaaagcggcctggtcgcatggatagagtatttcatcttcaaaggccaactcaagcagaaagggagaagatattacacatagctgcaaaagaaacaatggataatgagctcatcgattttgtagactggagaaaggttgctgaaaagactgctcttttaaggcctatagaattaaagctggtacctgcatcgttggaaggtagtgcctttaggagcaagtttctcgatacagatgagcttatgagctacagtagttggtttgcgactttcagcagcattattccaaaaggagtgcggaaaaccaaaattgcgaagaagctaagcaaaatgctggtgaatcatctggggctaacattgactaaagaagacctgcagagtgtggttgatctaatggagccatatggtcagataagcaatggaatagaacttctaaaccctcctcttgagtggacgagggagaccaagttccctcatgctgtctgggctgcaggtcgcggtctcattgcccttctgttgccaaactttgatgttgtagacaatatatggttggagccattgtcttggcagggaattggatgtacaaaaataaccaaggcgagaaatgaaggttctgggaatggaaatgctgaatcaagatcataccttgaaaagaagctcgtattttgttttggttcgcacattgcagcacaaatgctactcccttttggggaggagaacttgctttcttcttcagagttaacgcaagcacaggagatagctacacggatggttattcagtatgggtggggacctgatgatagtcctgcaatatattatcacagcaatgcgtctactgctttaagcatggggaataaccatgagtatgatatggcagttaaagttgaaaagatccatgatttagcatattataaagctaaagaaatgctccatcgaaatcgtcgagttcttgaaaagatggttgaggagttgcttgagtttgaaatcttgactgcaaaggatctaggaaggatttttgaagaaaatggtggggttcgagagaaggagccttttttcctttctggagctcatgatagagagacattgtctggcagctttcttgaaggtggggatgtatcagccactgtgcttttaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

1266

Amino Acids

144.79

Weight (kDa)

7.61

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04340
fragaria_vesca	FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550
malus_domestica	MD04G1232400.v1.1
prunus_persica	Prupe.6G352000_v2.0.a1
pyrus_communis	pycom04g20580
rosa_chinensis	RchiOBHm_Chr3g0449311
rosa_laevigata	RLG00000025840
rosa_multiflora	Rmu_sc0007719.1_g000003
rosa_roxburghii	Rroxscaffold_6G00427310
rosa_rugosa	Rorug02G0619600
rosa_samantha	Rh3AG017600 Rh3BG017700 Rh3CG016700 Rh3DG018000
rosa_wichuraiana	Rw1G017600 Rw3G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3573
AarI	CACCTGC	2 cut(s)	205, 487
Acc36I	ACCTGC	5 cut(s)	205, 487, 2857, 3042, 3143
Acc65I	GGTACC	1 cut(s)	2845
AccB1I	GGYRCC	4 cut(s)	2285, 2374, 2476, 2845
AccBSI	CCGCTC	1 cut(s)	389
AccI	GTMKAC	3 cut(s)	2787, 3198, 3494
AccII	CGCG	7 cut(s)	203, 230, 275, 284, 338, 2292, 3159
AclWI	GGATC	7 cut(s)	1606, 1619, 2045, 2132, 2562, 3547, 3669
AcoI	YGGCCR	2 cut(s)	263, 1302
AcsI	RAATTY	5 cut(s)	95, 1079, 1630, 1736, 2531
AcuI	CTGAAG	3 cut(s)	1151, 2024, 3378
AcvI	CACGTG	1 cut(s)	2150
AfiI	CCNNNNNNNGG	3 cut(s)	624, 2670, 3370
AflIII	ACRYGT	1 cut(s)	2147
AjnI	CCWGG	2 cut(s)	2263, 2674
AloI	GAACNNNNNNTCC	2 cut(s)	3113, 3145
Alw21I	GWGCWC	4 cut(s)	176, 225, 2775, 3730
Alw26I	GTCTC	9 cut(s)	157, 356, 734, 1059, 1420, 1671, 3116, 3167, 3734
AlwI	GGATC	7 cut(s)	1606, 1619, 2045, 2132, 2562, 3547, 3669
AlwNI	CAGNNNCTG	2 cut(s)	1400, 3785
Ama87I	CYCGRG	2 cut(s)	169, 2298
AoxI	GGCC	9 cut(s)	263, 1015, 1201, 1302, 1835, 2036, 2672, 2708, 2825
ApoI	RAATTY	5 cut(s)	95, 1079, 1630, 1736, 2531
ArsI	GACNNNNNNTTYG	4 cut(s)	135, 167, 1268, 1300
AsiSI	GCGATCGC	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	1320
Asp718I	GGTACC	1 cut(s)	2845
AspLEI	GCGC	1 cut(s)	2294
AspS9I	GGNCC	6 cut(s)	546, 971, 1330, 1390, 2036, 3452
AsuII	TTCGAA	1 cut(s)	1533
AvaI	CYCGRG	2 cut(s)	169, 2298
AvaII	GGWCC	5 cut(s)	546, 971, 1330, 1390, 3452
AxyI	CCTNAGG	1 cut(s)	1839
BaeGI	GKGCMC	1 cut(s)	2290
BaeI	ACNNNNGTAYC	2 cut(s)	1689, 1722
BalI	TGGCCA	1 cut(s)	1304
BamHI	GGATCC	1 cut(s)	1611
BanI	GGYRCC	4 cut(s)	2285, 2374, 2476, 2845
BanII	GRGCYC	3 cut(s)	176, 2775, 3730
BarI	GAAGNNNNNNTAC	2 cut(s)	2685, 2717
BbrPI	CACGTG	1 cut(s)	2150
BbsI	GAAGAC	3 cut(s)	1281, 1700, 3036
Bbv12I	GWGCWC	4 cut(s)	176, 225, 2775, 3730
BccI	CCATC	9 cut(s)	646, 1547, 1822, 2588, 2606, 2620, 3424, 3600, 3613
BceAI	ACGGC	2 cut(s)	381, 1397
BcgI	CGANNNNNNTGC	4 cut(s)	232, 266, 2869, 2903
BciT130I	CCWGG	2 cut(s)	2265, 2676
BciVI	GTATCC	2 cut(s)	1809, 1967
BclI	TGATCA	1 cut(s)	1849
BcoDI	GTCTC	9 cut(s)	157, 356, 734, 1059, 1420, 1671, 3116, 3167, 3734
BfaI	CTAG	4 cut(s)	399, 2345, 2370, 3665
BfmI	CTRYAG	6 cut(s)	1037, 2355, 2829, 2911, 3035, 3150
BfuAI	ACCTGC	5 cut(s)	205, 487, 2857, 3042, 3143
BfuI	GTATCC	2 cut(s)	1809, 1967
BlpI	GCTNAGC	1 cut(s)	2984
Bme1390I	CCNGG	2 cut(s)	2265, 2676
Bme18I	GGWCC	5 cut(s)	546, 971, 1330, 1390, 3452
BmeT110I	CYCGRG	2 cut(s)	169, 2298
BmgT120I	GGNCC	6 cut(s)	546, 971, 1330, 1390, 2036, 3452
BmrFI	CCNGG	2 cut(s)	2265, 2676
BmrI	ACTGGG	1 cut(s)	1388
BmsI	GCATC	5 cut(s)	99, 252, 2444, 2650, 2861
BmuI	ACTGGG	1 cut(s)	1388
BpiI	GAAGAC	3 cut(s)	1281, 1700, 3036
BpmI	CTGGAG	6 cut(s)	97, 141, 380, 2286, 2812, 3744
Bpu10I	CCTNAGC	1 cut(s)	1245
Bpu1102I	GCTNAGC	1 cut(s)	2984
Bpu14I	TTCGAA	1 cut(s)	1533
BpuEI	CTTGAG	8 cut(s)	1040, 1463, 2349, 2382, 2630, 2700, 3128, 3656
Bsa29I	ATCGAT	1 cut(s)	2778
BsaAI	YACGTR	2 cut(s)	1300, 2150
BsaBI	GATNNNNATC	1 cut(s)	1610
BsaI	GGTCTC	2 cut(s)	3116, 3167
BsaJI	CCNNGG	4 cut(s)	228, 1216, 2297, 3255
BsaWI	WCCGGW	1 cut(s)	617
Bsc4I	CCNNNNNNNGG	3 cut(s)	624, 2670, 3370
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	5 cut(s)	1394, 1431, 2355, 2641, 2795
Bse21I	CCTNAGG	1 cut(s)	1839
Bse3DI	GCAATG	5 cut(s)	1470, 3085, 3165, 3342, 3493
Bse8I	GATNNNNATC	1 cut(s)	1610
BseBI	CCWGG	2 cut(s)	2265, 2676
BseCI	ATCGAT	1 cut(s)	2778
BseDI	CCNNGG	4 cut(s)	228, 1216, 2297, 3255
BseGI	GGATG	9 cut(s)	421, 657, 727, 1167, 1833, 1930, 3245, 3435, 3778
BseJI	GATNNNNATC	1 cut(s)	1610
BseLI	CCNNNNNNNGG	3 cut(s)	624, 2670, 3370
BseMI	GCAATG	5 cut(s)	1470, 3085, 3165, 3342, 3493
BseMII	CTCAG	4 cut(s)	1041, 1614, 1830, 1881
BseNI	ACTGG	5 cut(s)	1394, 1431, 2355, 2641, 2795
BseSI	GKGCMC	1 cut(s)	2290
BseX3I	CGGCCG	1 cut(s)	263
BsgI	GTGCAG	2 cut(s)	515, 827
Bsh1236I	CGCG	7 cut(s)	203, 230, 275, 284, 338, 2292, 3159
Bsh1285I	CGRYCG	4 cut(s)	207, 266, 273, 282
BshFI	GGCC	9 cut(s)	265, 1017, 1203, 1304, 1837, 2038, 2674, 2710, 2827
BshNI	GGYRCC	4 cut(s)	2285, 2374, 2476, 2845
BshVI	ATCGAT	1 cut(s)	2778
BsiEI	CGRYCG	4 cut(s)	207, 266, 273, 282
BsiHKAI	GWGCWC	4 cut(s)	176, 225, 2775, 3730
BsiHKCI	CYCGRG	2 cut(s)	169, 2298
BsiSI	CCGG	3 cut(s)	262, 266, 618
BslFI	GGGAC	4 cut(s)	9, 984, 1172, 3465
BslI	CCNNNNNNNGG	3 cut(s)	624, 2670, 3370
BsmAI	GTCTC	9 cut(s)	157, 356, 734, 1059, 1420, 1671, 3116, 3167, 3734
BsmBI	CGTCTC	4 cut(s)	157, 356, 734, 1420
BsmFI	GGGAC	4 cut(s)	9, 984, 1172, 3465
BsnI	GGCC	9 cut(s)	265, 1017, 1203, 1304, 1837, 2038, 2674, 2710, 2827
Bso31I	GGTCTC	2 cut(s)	3116, 3167
BsoBI	CYCGRG	2 cut(s)	169, 2298
Bsp119I	TTCGAA	1 cut(s)	1533
Bsp1286I	GDGCHC	5 cut(s)	176, 225, 2290, 2775, 3730
Bsp1407I	TGTACA	4 cut(s)	1105, 1467, 1560, 3242
Bsp1720I	GCTNAGC	1 cut(s)	2984
Bsp19I	CCATGG	1 cut(s)	1216
BspANI	GGCC	9 cut(s)	265, 1017, 1203, 1304, 1837, 2038, 2674, 2710, 2827
BspCNI	CTCAG	4 cut(s)	1042, 1615, 1831, 1882
BspDI	ATCGAT	1 cut(s)	2778
BspFNI	CGCG	7 cut(s)	203, 230, 275, 284, 338, 2292, 3159
BspHI	TCATGA	2 cut(s)	2557, 3730
BspMAI	CTGCAG	3 cut(s)	1041, 3039, 3154
BspMI	ACCTGC	5 cut(s)	205, 487, 2857, 3042, 3143
BspPI	GGATC	7 cut(s)	1606, 1619, 2045, 2132, 2562, 3547, 3669
BspQI	GCTCTTC	1 cut(s)	1535
BspT104I	TTCGAA	1 cut(s)	1533
BspT107I	GGYRCC	4 cut(s)	2285, 2374, 2476, 2845
BspTNI	GGTCTC	2 cut(s)	3116, 3167
BsrBI	CCGCTC	1 cut(s)	389
BsrDI	GCAATG	5 cut(s)	1470, 3085, 3165, 3342, 3493
BsrFI	RCCGGY	1 cut(s)	265
BsrGI	TGTACA	4 cut(s)	1105, 1467, 1560, 3242
BsrI	ACTGG	5 cut(s)	1394, 1431, 2355, 2641, 2795
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	228, 1216, 2297, 3255
BssT1I	CCWWGG	2 cut(s)	1216, 3255
Bst2UI	CCWGG	2 cut(s)	2265, 2676
Bst4CI	ACNGT	8 cut(s)	689, 1296, 1657, 1821, 1963, 2023, 2915, 3787
Bst6I	CTCTTC	7 cut(s)	44, 459, 830, 1535, 2000, 2066, 2162
BstAPI	GCANNNNNTGC	2 cut(s)	220, 805
BstAUI	TGTACA	4 cut(s)	1105, 1467, 1560, 3242
BstBAI	YACGTR	2 cut(s)	1300, 2150
BstBI	TTCGAA	1 cut(s)	1533
BstC8I	GCNNGC	9 cut(s)	225, 267, 444, 747, 1201, 1437, 1575, 2290, 3408
BstDEI	CTNAG	6 cut(s)	1050, 1245, 1623, 1839, 1890, 2984
BstDSI	CCRYGG	2 cut(s)	228, 1216
BstF5I	GGATG	9 cut(s)	421, 657, 727, 1167, 1833, 1930, 3245, 3435, 3778
BstFNI	CGCG	7 cut(s)	203, 230, 275, 284, 338, 2292, 3159
BstHHI	GCGC	1 cut(s)	2294
BstMAI	GTCTC	9 cut(s)	157, 356, 734, 1059, 1420, 1671, 3116, 3167, 3734
BstMCI	CGRYCG	4 cut(s)	207, 266, 273, 282
BstNI	CCWGG	2 cut(s)	2265, 2676
BstNSI	RCATGY	1 cut(s)	1439
BstSCI	CCNGG	2 cut(s)	2263, 2674
BstSFI	CTRYAG	6 cut(s)	1037, 2355, 2829, 2911, 3035, 3150
BstSLI	GKGCMC	1 cut(s)	2290
BstUI	CGCG	7 cut(s)	203, 230, 275, 284, 338, 2292, 3159
BstV2I	GAAGAC	3 cut(s)	1281, 1700, 3036
BstX2I	RGATCY	3 cut(s)	1611, 3552, 3661
BstXI	CCANNNNNNTGG	2 cut(s)	2473, 3225
BstYI	RGATCY	3 cut(s)	1611, 3552, 3661
BstZI	CGGCCG	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	2778
Bsu36I	CCTNAGG	1 cut(s)	1839
BsuI	GTATCC	2 cut(s)	1809, 1967
BsuRI	GGCC	9 cut(s)	265, 1017, 1203, 1304, 1837, 2038, 2674, 2710, 2827
BsuTUI	ATCGAT	1 cut(s)	2778
BtgI	CCRYGG	2 cut(s)	228, 1216
BtgZI	GCGATG	1 cut(s)	1101
BtsCI	GGATG	9 cut(s)	421, 657, 727, 1167, 1833, 1930, 3245, 3435, 3778
BtsIMutI	CAGTG	5 cut(s)	694, 1401, 2046, 2348, 3783
BveI	ACCTGC	5 cut(s)	205, 487, 2857, 3042, 3143
Cac8I	GCNNGC	9 cut(s)	225, 267, 444, 747, 1201, 1437, 1575, 2290, 3408
CaiI	CAGNNNCTG	2 cut(s)	1400, 3785
CciI	TCATGA	2 cut(s)	2557, 3730
CfoI	GCGC	1 cut(s)	2294
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	6 cut(s)	546, 971, 1330, 1390, 2036, 3452
Cfr42I	CCGCGG	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	2778
CpoI	CGGWCCG	1 cut(s)	546
CseI	GACGC	2 cut(s)	751, 3480
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CspI	CGGWCCG	1 cut(s)	546
DdeI	CTNAG	6 cut(s)	1050, 1245, 1623, 1839, 1890, 2984
EaeI	YGGCCR	2 cut(s)	263, 1302
EagI	CGGCCG	1 cut(s)	263
Eam1104I	CTCTTC	7 cut(s)	44, 459, 830, 1535, 2000, 2066, 2162
EarI	CTCTTC	7 cut(s)	44, 459, 830, 1535, 2000, 2066, 2162
Ecl136II	GAGCTC	3 cut(s)	174, 2773, 3728
EclXI	CGGCCG	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	1216, 3255
Eco147I	AGGCCT	1 cut(s)	2827
Eco24I	GRGCYC	3 cut(s)	176, 2775, 3730
Eco31I	GGTCTC	2 cut(s)	3116, 3167
Eco32I	GATATC	1 cut(s)	1930
Eco47I	GGWCC	5 cut(s)	546, 971, 1330, 1390, 3452
Eco52I	CGGCCG	1 cut(s)	263
Eco53kI	GAGCTC	3 cut(s)	174, 2773, 3728
Eco57I	CTGAAG	3 cut(s)	1151, 2024, 3378
Eco72I	CACGTG	1 cut(s)	2150
Eco81I	CCTNAGG	1 cut(s)	1839
Eco88I	CYCGRG	2 cut(s)	169, 2298
EcoICRI	GAGCTC	3 cut(s)	174, 2773, 3728
EcoO109I	RGGNCCY	2 cut(s)	971, 3452
EcoRII	CCWGG	2 cut(s)	2263, 2674
EcoRV	GATATC	1 cut(s)	1930
EcoT14I	CCWWGG	2 cut(s)	1216, 3255
EcoT22I	ATGCAT	1 cut(s)	1687
EcoT38I	GRGCYC	3 cut(s)	176, 2775, 3730
ErhI	CCWWGG	2 cut(s)	1216, 3255
Esp3I	CGTCTC	4 cut(s)	157, 356, 734, 1420
FaqI	GGGAC	4 cut(s)	9, 984, 1172, 3465
FauI	CCCGC	3 cut(s)	435, 827, 2297
FauNDI	CATATG	1 cut(s)	3064
FbaI	TGATCA	1 cut(s)	1849
FblI	GTMKAC	3 cut(s)	2787, 3198, 3494
FokI	GGATG	9 cut(s)	428, 664, 734, 1174, 1840, 1937, 3252, 3442, 3785
FriOI	GRGCYC	3 cut(s)	176, 2775, 3730
FspBI	CTAG	4 cut(s)	399, 2345, 2370, 3665
GlaI	GCGC	1 cut(s)	2293
GsuI	CTGGAG	6 cut(s)	97, 141, 380, 2286, 2812, 3744
HaeIII	GGCC	9 cut(s)	265, 1017, 1203, 1304, 1837, 2038, 2674, 2710, 2827
HapII	CCGG	3 cut(s)	262, 266, 618
HgaI	GACGC	2 cut(s)	751, 3480
HhaI	GCGC	1 cut(s)	2294
Hin6I	GCGC	1 cut(s)	2292
HinP1I	GCGC	1 cut(s)	2292
HincII	GTYRAC	5 cut(s)	1507, 1640, 1861, 2386, 3402
HindII	GTYRAC	5 cut(s)	1507, 1640, 1861, 2386, 3402
HindIII	AAGCTT	2 cut(s)	872, 2562
HpaI	GTTAAC	2 cut(s)	2386, 3402
HpaII	CCGG	3 cut(s)	262, 266, 618
Hpy188I	TCNGA	6 cut(s)	550, 886, 1624, 1891, 3072, 3397
Hpy99I	CGWCG	2 cut(s)	1757, 3606
HpyCH4III	ACNGT	8 cut(s)	689, 1296, 1657, 1821, 1963, 2023, 2915, 3787
HpyCH4IV	ACGT	4 cut(s)	1278, 1299, 1868, 2149
HpyF3I	CTNAG	6 cut(s)	1050, 1245, 1623, 1839, 1890, 2984
HpySE526I	ACGT	4 cut(s)	1278, 1299, 1868, 2149
HspAI	GCGC	1 cut(s)	2292
KpnI	GGTACC	1 cut(s)	2849
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	1849
KspAI	GTTAAC	2 cut(s)	2386, 3402
KspI	CCGCGG	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	1535
LweI	GCATC	5 cut(s)	99, 252, 2444, 2650, 2861
MaeI	CTAG	4 cut(s)	399, 2345, 2370, 3665
MaeII	ACGT	4 cut(s)	1278, 1299, 1868, 2149
MaeIII	GTNAC	3 cut(s)	131, 317, 865
MbiI	CCGCTC	1 cut(s)	389
MflI	RGATCY	3 cut(s)	1611, 3552, 3661
MhlI	GDGCHC	5 cut(s)	176, 225, 2290, 2775, 3730
MlsI	TGGCCA	1 cut(s)	1304
MluNI	TGGCCA	1 cut(s)	1304
MlyI	GAGTC	3 cut(s)	1034, 1061, 1856
MmeI	TCCRAC	5 cut(s)	654, 1613, 2385, 2838, 3192
Mox20I	TGGCCA	1 cut(s)	1304
Mph1103I	ATGCAT	1 cut(s)	1687
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	1320
MscI	TGGCCA	1 cut(s)	1304
MslI	CAYNNNNRTG	5 cut(s)	1568, 1763, 2492, 3486, 3525
Msp20I	TGGCCA	1 cut(s)	1304
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	262, 266, 618
MspR9I	CCNGG	2 cut(s)	2265, 2676
MvaI	CCWGG	2 cut(s)	2265, 2676
MvnI	CGCG	7 cut(s)	203, 230, 275, 284, 338, 2292, 3159
NaeI	GCCGGC	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	1216
NdeI	CATATG	1 cut(s)	3064
NgoMIV	GCCGGC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	1687
NspI	RCATGY	1 cut(s)	1439
NspV	TTCGAA	1 cut(s)	1533
PaeI	GCATGC	1 cut(s)	1439
PaeR7I	CTCGAG	1 cut(s)	169
PagI	TCATGA	2 cut(s)	2557, 3730
PaqCI	CACCTGC	2 cut(s)	205, 487
PceI	AGGCCT	1 cut(s)	2827
PciSI	GCTCTTC	1 cut(s)	1535
PcsI	WCGNNNNNNNCGW	2 cut(s)	941, 3601
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	1320
PfeI	GAWTC	6 cut(s)	196, 614, 937, 2216, 3001, 3293
PflFI	GACNNNGTC	1 cut(s)	3745
PfoI	TCCNGGA	1 cut(s)	2263
Ple19I	CGATCG	1 cut(s)	273
PleI	GAGTC	3 cut(s)	1033, 1060, 1856
PmaCI	CACGTG	1 cut(s)	2150
PmlI	CACGTG	1 cut(s)	2150
PpsI	GAGTC	3 cut(s)	1033, 1060, 1856
Ppu21I	YACGTR	2 cut(s)	1300, 2150
PpuMI	RGGWCCY	2 cut(s)	971, 3452
PsiI	TTATAA	1 cut(s)	3573
Psp124BI	GAGCTC	3 cut(s)	176, 2775, 3730
Psp5II	RGGWCCY	2 cut(s)	971, 3452
Psp6I	CCWGG	2 cut(s)	2263, 2674
PspCI	CACGTG	1 cut(s)	2150
PspGI	CCWGG	2 cut(s)	2263, 2674
PspPI	GGNCC	6 cut(s)	546, 971, 1330, 1390, 2036, 3452
PspPPI	RGGWCCY	2 cut(s)	971, 3452
PspXI	VCTCGAGB	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	2007, 2039
PstI	CTGCAG	3 cut(s)	1041, 3039, 3154
PstNI	CAGNNNCTG	2 cut(s)	1400, 3785
PsuI	RGATCY	3 cut(s)	1611, 3552, 3661
PsyI	GACNNNGTC	1 cut(s)	3745
PvuI	CGATCG	1 cut(s)	273
RgaI	GCGATCGC	1 cut(s)	273
RseI	CAYNNNNRTG	5 cut(s)	1568, 1763, 2492, 3486, 3525
Rsr2I	CGGWCCG	1 cut(s)	546
RsrII	CGGWCCG	1 cut(s)	546
SacI	GAGCTC	3 cut(s)	176, 2775, 3730
SacII	CCGCGG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	1535
Sau96I	GGNCC	6 cut(s)	546, 971, 1330, 1390, 2036, 3452
SchI	GAGTC	3 cut(s)	1034, 1061, 1856
ScrFI	CCNGG	2 cut(s)	2265, 2676
SduI	GDGCHC	5 cut(s)	176, 225, 2290, 2775, 3730
SfaAI	GCGATCGC	1 cut(s)	273
SfaNI	GCATC	5 cut(s)	99, 252, 2444, 2650, 2861
SfcI	CTRYAG	6 cut(s)	1037, 2355, 2829, 2911, 3035, 3150
Sfr274I	CTCGAG	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	1533
SgfI	GCGATCGC	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	5 cut(s)	546, 971, 1330, 1390, 3452
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	5 cut(s)	1568, 1763, 2492, 3486, 3525
SmlI	CTYRAG	9 cut(s)	169, 1019, 1478, 2364, 2397, 2645, 2715, 3107, 3635
SmoI	CTYRAG	9 cut(s)	169, 1019, 1478, 2364, 2397, 2645, 2715, 3107, 3635
SphI	GCATGC	1 cut(s)	1439
SseBI	AGGCCT	1 cut(s)	2827
SspI	AATATT	1 cut(s)	1499
SspMI	CTAG	4 cut(s)	399, 2345, 2370, 3665
SstI	GAGCTC	3 cut(s)	176, 2775, 3730
StuI	AGGCCT	1 cut(s)	2827
StyD4I	CCNGG	2 cut(s)	2263, 2674
StyI	CCWWGG	2 cut(s)	1216, 3255
TaaI	ACNGT	8 cut(s)	689, 1296, 1657, 1821, 1963, 2023, 2915, 3787
TaiI	ACGT	4 cut(s)	1281, 1302, 1871, 2152
TaqI	TCGA	9 cut(s)	170, 731, 1533, 2524, 2778, 2889, 3595, 3604, 3697
TaqII	GACCGA	1 cut(s)	1347
TatI	WGTACW	5 cut(s)	684, 1105, 1467, 1560, 3242
TauI	GCSGC	7 cut(s)	90, 230, 278, 287, 290, 371, 2674
TfiI	GAWTC	6 cut(s)	196, 614, 937, 2216, 3001, 3293
TscAI	CASTG	5 cut(s)	694, 1401, 2053, 2355, 3790
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspGWI	ACGGA	7 cut(s)	11, 246, 853, 1004, 1625, 1937, 3442
TspRI	CASTG	5 cut(s)	694, 1401, 2053, 2355, 3790
Tth111I	GACNNNGTC	1 cut(s)	3745
VpaK11BI	GGWCC	5 cut(s)	546, 971, 1330, 1390, 3452
XapI	RAATTY	5 cut(s)	95, 1079, 1630, 1736, 2531
XceI	RCATGY	1 cut(s)	1439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XhoI	CTCGAG	1 cut(s)	169
XmiI	GTMKAC	3 cut(s)	2787, 3198, 3494
XmnI	GAANNNNTTC	1 cut(s)	1320
XspI	CTAG	4 cut(s)	399, 2345, 2370, 3665
Zsp2I	ATGCAT	1 cut(s)	1687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.