ATPase family associated with various cellular activities (AAA)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04340 |
| fragaria_vesca | FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 |
| malus_domestica | MD04G1232400.v1.1 |
| prunus_persica | Prupe.6G352000_v2.0.a1 |
| pyrus_communis | pycom04g20580 |
| rosa_chinensis | RchiOBHm_Chr3g0449311 |
| rosa_laevigata | RLG00000025840 |
| rosa_multiflora | Rmu_sc0007719.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00427310 |
| rosa_rugosa | Rorug02G0619600 |
| rosa_samantha | Rh3AG017600 Rh3BG017700 Rh3CG016700 Rh3DG018000 |
| rosa_wichuraiana | Rw1G017600 Rw3G001350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2502 |
| Acc36I | ACCTGC | 3 cut(s) | 1786, 1971, 2072 |
| Acc65I | GGTACC | 1 cut(s) | 1774 |
| AccB1I | GGYRCC | 4 cut(s) | 1214, 1303, 1405, 1774 |
| AccI | GTMKAC | 3 cut(s) | 1716, 2127, 2423 |
| AccII | CGCG | 2 cut(s) | 1221, 2088 |
| AciI | CCGC | 6 cut(s) | 25, 1219, 1600, 1888, 2088, 2683 |
| AclWI | GGATC | 7 cut(s) | 535, 548, 974, 1061, 1491, 2476, 2598 |
| AcoI | YGGCCR | 3 cut(s) | 231, 1281, 2680 |
| AcsI | RAATTY | 4 cut(s) | 8, 559, 665, 1460 |
| AcuI | CTGAAG | 4 cut(s) | 80, 953, 2217, 2307 |
| AcvI | CACGTG | 1 cut(s) | 1079 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1599, 2299 |
| AflIII | ACRYGT | 1 cut(s) | 1076 |
| AjnI | CCWGG | 2 cut(s) | 1192, 1603 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2042, 2074 |
| Alw21I | GWGCWC | 2 cut(s) | 1704, 2659 |
| Alw26I | GTCTC | 5 cut(s) | 349, 600, 2045, 2096, 2663 |
| AlwI | GGATC | 7 cut(s) | 535, 548, 974, 1061, 1491, 2476, 2598 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 329, 2714 |
| Ama87I | CYCGRG | 1 cut(s) | 1227 |
| AoxI | GGCC | 9 cut(s) | 130, 231, 764, 965, 1281, 1601, 1637, 1754, 2680 |
| ApeKI | GCWGC | 7 cut(s) | 125, 389, 1289, 1676, 1866, 2078, 2276 |
| ApoI | RAATTY | 4 cut(s) | 8, 559, 665, 1460 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 197, 229 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 249 |
| Asp718I | GGTACC | 1 cut(s) | 1774 |
| AspLEI | GCGC | 1 cut(s) | 1223 |
| AspS9I | GGNCC | 4 cut(s) | 259, 319, 965, 2381 |
| AsuHPI | GGTGA | 6 cut(s) | 425, 521, 590, 1042, 1259, 1939 |
| AsuII | TTCGAA | 1 cut(s) | 462 |
| AvaI | CYCGRG | 1 cut(s) | 1227 |
| AvaII | GGWCC | 3 cut(s) | 259, 319, 2381 |
| AxyI | CCTNAGG | 1 cut(s) | 768 |
| BaeGI | GKGCMC | 1 cut(s) | 1219 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 618, 651 |
| BalI | TGGCCA | 2 cut(s) | 233, 1283 |
| BamHI | GGATCC | 1 cut(s) | 540 |
| BanI | GGYRCC | 4 cut(s) | 1214, 1303, 1405, 1774 |
| BanII | GRGCYC | 2 cut(s) | 1704, 2659 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1614, 1646 |
| BauI | CACGAG | 1 cut(s) | 2450 |
| BbrPI | CACGTG | 1 cut(s) | 1079 |
| BbsI | GAAGAC | 3 cut(s) | 210, 629, 1965 |
| Bbv12I | GWGCWC | 2 cut(s) | 1704, 2659 |
| BbvI | GCAGC | 7 cut(s) | 112, 376, 1276, 1663, 1878, 2065, 2288 |
| BccI | CCATC | 8 cut(s) | 476, 751, 1517, 1535, 1549, 2353, 2529, 2542 |
| BceAI | ACGGC | 1 cut(s) | 326 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1798, 1832 |
| BciT130I | CCWGG | 2 cut(s) | 1194, 1605 |
| BciVI | GTATCC | 2 cut(s) | 738, 896 |
| BclI | TGATCA | 1 cut(s) | 778 |
| BcoDI | GTCTC | 5 cut(s) | 349, 600, 2045, 2096, 2663 |
| BfaI | CTAG | 3 cut(s) | 1274, 1299, 2594 |
| BfmI | CTRYAG | 4 cut(s) | 1758, 1840, 1964, 2079 |
| BfuAI | ACCTGC | 3 cut(s) | 1786, 1971, 2072 |
| BfuI | GTATCC | 2 cut(s) | 738, 896 |
| BisI | GCNGC | 9 cut(s) | 126, 390, 1290, 1601, 1677, 1867, 2079, 2277, 2683 |
| BlpI | GCTNAGC | 1 cut(s) | 1913 |
| BlsI | GCNGC | 9 cut(s) | 127, 391, 1291, 1602, 1678, 1868, 2080, 2278, 2684 |
| Bme1390I | CCNGG | 2 cut(s) | 1194, 1605 |
| Bme18I | GGWCC | 3 cut(s) | 259, 319, 2381 |
| BmeT110I | CYCGRG | 1 cut(s) | 1227 |
| BmgT120I | GGNCC | 4 cut(s) | 259, 319, 965, 2381 |
| BmrFI | CCNGG | 2 cut(s) | 1194, 1605 |
| BmrI | ACTGGG | 1 cut(s) | 317 |
| BmsI | GCATC | 3 cut(s) | 1373, 1579, 1790 |
| BmuI | ACTGGG | 1 cut(s) | 317 |
| BpiI | GAAGAC | 3 cut(s) | 210, 629, 1965 |
| BpmI | CTGGAG | 4 cut(s) | 1215, 1741, 2162, 2673 |
| Bpu10I | CCTNAGC | 1 cut(s) | 174 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1913 |
| Bpu14I | TTCGAA | 1 cut(s) | 462 |
| BpuEI | CTTGAG | 7 cut(s) | 392, 1278, 1311, 1559, 1629, 2057, 2585 |
| BsaAI | YACGTR | 2 cut(s) | 229, 1079 |
| BsaBI | GATNNNNATC | 1 cut(s) | 539 |
| BsaI | GGTCTC | 2 cut(s) | 2045, 2096 |
| BsaJI | CCNNGG | 3 cut(s) | 145, 1226, 2184 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2042, 2072, 2135, 2165 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1599, 2299 |
| Bse1I | ACTGG | 5 cut(s) | 323, 360, 1284, 1570, 1724 |
| Bse21I | CCTNAGG | 1 cut(s) | 768 |
| Bse3DI | GCAATG | 5 cut(s) | 399, 2014, 2094, 2271, 2422 |
| Bse8I | GATNNNNATC | 1 cut(s) | 539 |
| BseBI | CCWGG | 2 cut(s) | 1194, 1605 |
| BseDI | CCNNGG | 3 cut(s) | 145, 1226, 2184 |
| BseGI | GGATG | 6 cut(s) | 96, 762, 859, 2174, 2364, 2707 |
| BseJI | GATNNNNATC | 1 cut(s) | 539 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1599, 2299 |
| BseMI | GCAATG | 5 cut(s) | 399, 2014, 2094, 2271, 2422 |
| BseMII | CTCAG | 3 cut(s) | 543, 759, 810 |
| BseNI | ACTGG | 5 cut(s) | 323, 360, 1284, 1570, 1724 |
| BseRI | GAGGAG | 3 cut(s) | 2022, 2318, 2570 |
| BseSI | GKGCMC | 1 cut(s) | 1219 |
| BseXI | GCAGC | 7 cut(s) | 112, 376, 1276, 1663, 1878, 2065, 2288 |
| Bsh1236I | CGCG | 2 cut(s) | 1221, 2088 |
| BshFI | GGCC | 9 cut(s) | 132, 233, 766, 967, 1283, 1603, 1639, 1756, 2682 |
| BshNI | GGYRCC | 4 cut(s) | 1214, 1303, 1405, 1774 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1704, 2659 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1227 |
| BslFI | GGGAC | 2 cut(s) | 101, 2394 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1599, 2299 |
| BsmAI | GTCTC | 5 cut(s) | 349, 600, 2045, 2096, 2663 |
| BsmBI | CGTCTC | 1 cut(s) | 349 |
| BsmFI | GGGAC | 2 cut(s) | 101, 2394 |
| BsnI | GGCC | 9 cut(s) | 132, 233, 766, 967, 1283, 1603, 1639, 1756, 2682 |
| Bso31I | GGTCTC | 2 cut(s) | 2045, 2096 |
| BsoBI | CYCGRG | 1 cut(s) | 1227 |
| Bsp119I | TTCGAA | 1 cut(s) | 462 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1219, 1704, 2659 |
| Bsp1407I | TGTACA | 4 cut(s) | 34, 396, 489, 2171 |
| Bsp143I | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1913 |
| Bsp19I | CCATGG | 1 cut(s) | 145 |
| BspACI | CCGC | 6 cut(s) | 25, 1219, 1600, 1888, 2088, 2683 |
| BspANI | GGCC | 9 cut(s) | 132, 233, 766, 967, 1283, 1603, 1639, 1756, 2682 |
| BspCNI | CTCAG | 3 cut(s) | 544, 760, 811 |
| BspFNI | CGCG | 2 cut(s) | 1221, 2088 |
| BspHI | TCATGA | 2 cut(s) | 1486, 2659 |
| BspMAI | CTGCAG | 2 cut(s) | 1968, 2083 |
| BspMI | ACCTGC | 3 cut(s) | 1786, 1971, 2072 |
| BspPI | GGATC | 7 cut(s) | 535, 548, 974, 1061, 1491, 2476, 2598 |
| BspQI | GCTCTTC | 2 cut(s) | 464, 2106 |
| BspT104I | TTCGAA | 1 cut(s) | 462 |
| BspT107I | GGYRCC | 4 cut(s) | 1214, 1303, 1405, 1774 |
| BspTNI | GGTCTC | 2 cut(s) | 2045, 2096 |
| BsrDI | GCAATG | 5 cut(s) | 399, 2014, 2094, 2271, 2422 |
| BsrGI | TGTACA | 4 cut(s) | 34, 396, 489, 2171 |
| BsrI | ACTGG | 5 cut(s) | 323, 360, 1284, 1570, 1724 |
| BssECI | CCNNGG | 3 cut(s) | 145, 1226, 2184 |
| BssMI | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| BssSI | CACGAG | 1 cut(s) | 2450 |
| BssT1I | CCWWGG | 2 cut(s) | 145, 2184 |
| Bst2BI | CACGAG | 1 cut(s) | 2450 |
| Bst2UI | CCWGG | 2 cut(s) | 1194, 1605 |
| Bst4CI | ACNGT | 6 cut(s) | 225, 750, 892, 952, 1844, 2716 |
| Bst6I | CTCTTC | 5 cut(s) | 464, 929, 995, 1091, 2106 |
| BstAUI | TGTACA | 4 cut(s) | 34, 396, 489, 2171 |
| BstBAI | YACGTR | 2 cut(s) | 229, 1079 |
| BstBI | TTCGAA | 1 cut(s) | 462 |
| BstC8I | GCNNGC | 5 cut(s) | 130, 366, 504, 1219, 2337 |
| BstDEI | CTNAG | 5 cut(s) | 174, 552, 768, 819, 1913 |
| BstDSI | CCRYGG | 1 cut(s) | 145 |
| BstF5I | GGATG | 6 cut(s) | 96, 762, 859, 2174, 2364, 2707 |
| BstFNI | CGCG | 2 cut(s) | 1221, 2088 |
| BstHHI | GCGC | 1 cut(s) | 1223 |
| BstKTI | GATC | 9 cut(s) | 543, 781, 982, 1069, 1486, 1981, 2231, 2484, 2593 |
| BstMAI | GTCTC | 5 cut(s) | 349, 600, 2045, 2096, 2663 |
| BstMBI | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1289, 1295, 2075, 2426 |
| BstNI | CCWGG | 2 cut(s) | 1194, 1605 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSCI | CCNGG | 2 cut(s) | 1192, 1603 |
| BstSFI | CTRYAG | 4 cut(s) | 1758, 1840, 1964, 2079 |
| BstSLI | GKGCMC | 1 cut(s) | 1219 |
| BstUI | CGCG | 2 cut(s) | 1221, 2088 |
| BstV1I | GCAGC | 7 cut(s) | 112, 376, 1276, 1663, 1878, 2065, 2288 |
| BstV2I | GAAGAC | 3 cut(s) | 210, 629, 1965 |
| BstX2I | RGATCY | 3 cut(s) | 540, 2481, 2590 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1402, 2154 |
| BstYI | RGATCY | 3 cut(s) | 540, 2481, 2590 |
| Bsu36I | CCTNAGG | 1 cut(s) | 768 |
| BsuI | GTATCC | 2 cut(s) | 738, 896 |
| BsuRI | GGCC | 9 cut(s) | 132, 233, 766, 967, 1283, 1603, 1639, 1756, 2682 |
| BtgI | CCRYGG | 1 cut(s) | 145 |
| BtgZI | GCGATG | 1 cut(s) | 30 |
| BtsCI | GGATG | 6 cut(s) | 96, 762, 859, 2174, 2364, 2707 |
| BtsIMutI | CAGTG | 4 cut(s) | 330, 975, 1277, 2712 |
| BveI | ACCTGC | 3 cut(s) | 1786, 1971, 2072 |
| Cac8I | GCNNGC | 5 cut(s) | 130, 366, 504, 1219, 2337 |
| CaiI | CAGNNNCTG | 2 cut(s) | 329, 2714 |
| CciI | TCATGA | 2 cut(s) | 1486, 2659 |
| CfoI | GCGC | 1 cut(s) | 1223 |
| Cfr13I | GGNCC | 4 cut(s) | 259, 319, 965, 2381 |
| CseI | GACGC | 1 cut(s) | 2409 |
| DdeI | CTNAG | 5 cut(s) | 174, 552, 768, 819, 1913 |
| DpnI | GATC | 9 cut(s) | 542, 780, 981, 1068, 1485, 1980, 2230, 2483, 2592 |
| DpnII | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| EaeI | YGGCCR | 3 cut(s) | 231, 1281, 2680 |
| Eam1104I | CTCTTC | 5 cut(s) | 464, 929, 995, 1091, 2106 |
| EarI | CTCTTC | 5 cut(s) | 464, 929, 995, 1091, 2106 |
| Ecl136II | GAGCTC | 2 cut(s) | 1702, 2657 |
| Eco130I | CCWWGG | 2 cut(s) | 145, 2184 |
| Eco147I | AGGCCT | 1 cut(s) | 1756 |
| Eco24I | GRGCYC | 2 cut(s) | 1704, 2659 |
| Eco31I | GGTCTC | 2 cut(s) | 2045, 2096 |
| Eco32I | GATATC | 1 cut(s) | 859 |
| Eco47I | GGWCC | 3 cut(s) | 259, 319, 2381 |
| Eco53kI | GAGCTC | 2 cut(s) | 1702, 2657 |
| Eco57I | CTGAAG | 4 cut(s) | 80, 953, 2217, 2307 |
| Eco72I | CACGTG | 1 cut(s) | 1079 |
| Eco81I | CCTNAGG | 1 cut(s) | 768 |
| Eco88I | CYCGRG | 1 cut(s) | 1227 |
| EcoICRI | GAGCTC | 2 cut(s) | 1702, 2657 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2381 |
| EcoRII | CCWGG | 2 cut(s) | 1192, 1603 |
| EcoRV | GATATC | 1 cut(s) | 859 |
| EcoT14I | CCWWGG | 2 cut(s) | 145, 2184 |
| EcoT22I | ATGCAT | 1 cut(s) | 616 |
| EcoT38I | GRGCYC | 2 cut(s) | 1704, 2659 |
| ErhI | CCWWGG | 2 cut(s) | 145, 2184 |
| Esp3I | CGTCTC | 1 cut(s) | 349 |
| FaqI | GGGAC | 2 cut(s) | 101, 2394 |
| FauI | CCCGC | 1 cut(s) | 1226 |
| FauNDI | CATATG | 1 cut(s) | 1993 |
| FbaI | TGATCA | 1 cut(s) | 778 |
| FblI | GTMKAC | 3 cut(s) | 1716, 2127, 2423 |
| Fnu4HI | GCNGC | 9 cut(s) | 126, 390, 1290, 1601, 1677, 1867, 2079, 2277, 2683 |
| FokI | GGATG | 6 cut(s) | 103, 769, 866, 2181, 2371, 2714 |
| FriOI | GRGCYC | 2 cut(s) | 1704, 2659 |
| Fsp4HI | GCNGC | 9 cut(s) | 126, 390, 1290, 1601, 1677, 1867, 2079, 2277, 2683 |
| FspBI | CTAG | 3 cut(s) | 1274, 1299, 2594 |
| GlaI | GCGC | 1 cut(s) | 1222 |
| GluI | GCNGC | 9 cut(s) | 126, 390, 1290, 1601, 1677, 1867, 2079, 2277, 2683 |
| GsuI | CTGGAG | 4 cut(s) | 1215, 1741, 2162, 2673 |
| HaeIII | GGCC | 9 cut(s) | 132, 233, 766, 967, 1283, 1603, 1639, 1756, 2682 |
| HgaI | GACGC | 1 cut(s) | 2409 |
| HhaI | GCGC | 1 cut(s) | 1223 |
| Hin6I | GCGC | 1 cut(s) | 1221 |
| HinP1I | GCGC | 1 cut(s) | 1221 |
| HincII | GTYRAC | 5 cut(s) | 436, 569, 790, 1315, 2331 |
| HindII | GTYRAC | 5 cut(s) | 436, 569, 790, 1315, 2331 |
| HindIII | AAGCTT | 1 cut(s) | 1491 |
| HinfI | GANTC | 5 cut(s) | 791, 1145, 1930, 2163, 2222 |
| HpaI | GTTAAC | 2 cut(s) | 1315, 2331 |
| HphI | GGTGA | 6 cut(s) | 425, 521, 590, 1042, 1259, 1939 |
| Hpy188I | TCNGA | 5 cut(s) | 553, 820, 2001, 2168, 2326 |
| Hpy99I | CGWCG | 1 cut(s) | 2535 |
| HpyAV | CCTTC | 7 cut(s) | 55, 97, 1120, 1784, 2192, 2592, 2687 |
| HpyCH4III | ACNGT | 6 cut(s) | 225, 750, 892, 952, 1844, 2716 |
| HpyCH4IV | ACGT | 3 cut(s) | 207, 228, 1078 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1289, 1295, 2075, 2426 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 552, 768, 819, 1913 |
| HpySE526I | ACGT | 3 cut(s) | 207, 228, 1078 |
| HspAI | GCGC | 1 cut(s) | 1221 |
| KpnI | GGTACC | 1 cut(s) | 1778 |
| Ksp22I | TGATCA | 1 cut(s) | 778 |
| KspAI | GTTAAC | 2 cut(s) | 1315, 2331 |
| Kzo9I | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| LguI | GCTCTTC | 2 cut(s) | 464, 2106 |
| LmnI | GCTCC | 8 cut(s) | 361, 718, 1196, 1806, 1987, 2143, 2523, 2654 |
| Lsp1109I | GCAGC | 7 cut(s) | 112, 376, 1276, 1663, 1878, 2065, 2288 |
| LweI | GCATC | 3 cut(s) | 1373, 1579, 1790 |
| MaeI | CTAG | 3 cut(s) | 1274, 1299, 2594 |
| MaeII | ACGT | 3 cut(s) | 207, 228, 1078 |
| MalI | GATC | 9 cut(s) | 542, 780, 981, 1068, 1485, 1980, 2230, 2483, 2592 |
| MboI | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| MflI | RGATCY | 3 cut(s) | 540, 2481, 2590 |
| MhlI | GDGCHC | 3 cut(s) | 1219, 1704, 2659 |
| MlsI | TGGCCA | 2 cut(s) | 233, 1283 |
| MluNI | TGGCCA | 2 cut(s) | 233, 1283 |
| MlyI | GAGTC | 1 cut(s) | 785 |
| MmeI | TCCRAC | 3 cut(s) | 542, 1314, 1767 |
| Mox20I | TGGCCA | 2 cut(s) | 233, 1283 |
| Mph1103I | ATGCAT | 1 cut(s) | 616 |
| MroXI | GAANNNNTTC | 1 cut(s) | 249 |
| MscI | TGGCCA | 2 cut(s) | 233, 1283 |
| MslI | CAYNNNNRTG | 4 cut(s) | 497, 692, 2415, 2454 |
| Msp20I | TGGCCA | 2 cut(s) | 233, 1283 |
| MspR9I | CCNGG | 2 cut(s) | 1194, 1605 |
| MvaI | CCWGG | 2 cut(s) | 1194, 1605 |
| MvnI | CGCG | 2 cut(s) | 1221, 2088 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1289, 1295, 2075, 2426 |
| NcoI | CCATGG | 1 cut(s) | 145 |
| NdeI | CATATG | 1 cut(s) | 1993 |
| NdeII | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| NsiI | ATGCAT | 1 cut(s) | 616 |
| NspI | RCATGY | 1 cut(s) | 368 |
| NspV | TTCGAA | 1 cut(s) | 462 |
| PaeI | GCATGC | 1 cut(s) | 368 |
| PagI | TCATGA | 2 cut(s) | 1486, 2659 |
| PceI | AGGCCT | 1 cut(s) | 1756 |
| PciSI | GCTCTTC | 2 cut(s) | 464, 2106 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2530 |
| PdmI | GAANNNNTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 4 cut(s) | 1145, 1930, 2163, 2222 |
| PflFI | GACNNNGTC | 1 cut(s) | 2674 |
| PfoI | TCCNGGA | 1 cut(s) | 1192 |
| PkrI | GCNGC | 9 cut(s) | 127, 391, 1291, 1602, 1678, 1868, 2080, 2278, 2684 |
| PleI | GAGTC | 1 cut(s) | 785 |
| PmaCI | CACGTG | 1 cut(s) | 1079 |
| PmlI | CACGTG | 1 cut(s) | 1079 |
| PpsI | GAGTC | 1 cut(s) | 785 |
| Ppu21I | YACGTR | 2 cut(s) | 229, 1079 |
| PpuMI | RGGWCCY | 1 cut(s) | 2381 |
| PsiI | TTATAA | 1 cut(s) | 2502 |
| Psp124BI | GAGCTC | 2 cut(s) | 1704, 2659 |
| Psp5II | RGGWCCY | 1 cut(s) | 2381 |
| Psp6I | CCWGG | 2 cut(s) | 1192, 1603 |
| PspCI | CACGTG | 1 cut(s) | 1079 |
| PspGI | CCWGG | 2 cut(s) | 1192, 1603 |
| PspPI | GGNCC | 4 cut(s) | 259, 319, 965, 2381 |
| PspPPI | RGGWCCY | 1 cut(s) | 2381 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 936, 968 |
| PstI | CTGCAG | 2 cut(s) | 1968, 2083 |
| PstNI | CAGNNNCTG | 2 cut(s) | 329, 2714 |
| PsuI | RGATCY | 3 cut(s) | 540, 2481, 2590 |
| PsyI | GACNNNGTC | 1 cut(s) | 2674 |
| RseI | CAYNNNNRTG | 4 cut(s) | 497, 692, 2415, 2454 |
| SacI | GAGCTC | 2 cut(s) | 1704, 2659 |
| SapI | GCTCTTC | 2 cut(s) | 464, 2106 |
| SatI | GCNGC | 9 cut(s) | 126, 390, 1290, 1601, 1677, 1867, 2079, 2277, 2683 |
| Sau3AI | GATC | 9 cut(s) | 540, 778, 979, 1066, 1483, 1978, 2228, 2481, 2590 |
| Sau96I | GGNCC | 4 cut(s) | 259, 319, 965, 2381 |
| SchI | GAGTC | 1 cut(s) | 785 |
| ScrFI | CCNGG | 2 cut(s) | 1194, 1605 |
| SduI | GDGCHC | 3 cut(s) | 1219, 1704, 2659 |
| SfaNI | GCATC | 3 cut(s) | 1373, 1579, 1790 |
| SfcI | CTRYAG | 4 cut(s) | 1758, 1840, 1964, 2079 |
| SfuI | TTCGAA | 1 cut(s) | 462 |
| SinI | GGWCC | 3 cut(s) | 259, 319, 2381 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 497, 692, 2415, 2454 |
| SmlI | CTYRAG | 7 cut(s) | 407, 1293, 1326, 1574, 1644, 2036, 2564 |
| SmoI | CTYRAG | 7 cut(s) | 407, 1293, 1326, 1574, 1644, 2036, 2564 |
| SphI | GCATGC | 1 cut(s) | 368 |
| SseBI | AGGCCT | 1 cut(s) | 1756 |
| SsiI | CCGC | 6 cut(s) | 25, 1219, 1600, 1888, 2088, 2683 |
| SspI | AATATT | 1 cut(s) | 428 |
| SspMI | CTAG | 3 cut(s) | 1274, 1299, 2594 |
| SstI | GAGCTC | 2 cut(s) | 1704, 2659 |
| StuI | AGGCCT | 1 cut(s) | 1756 |
| StyD4I | CCNGG | 2 cut(s) | 1192, 1603 |
| StyI | CCWWGG | 2 cut(s) | 145, 2184 |
| TaaI | ACNGT | 6 cut(s) | 225, 750, 892, 952, 1844, 2716 |
| TaiI | ACGT | 3 cut(s) | 210, 231, 1081 |
| TaqI | TCGA | 7 cut(s) | 462, 1453, 1818, 2524, 2533, 2626, 2691 |
| TaqII | GACCGA | 1 cut(s) | 276 |
| TatI | WGTACW | 4 cut(s) | 34, 396, 489, 2171 |
| TauI | GCSGC | 2 cut(s) | 1603, 2685 |
| TfiI | GAWTC | 4 cut(s) | 1145, 1930, 2163, 2222 |
| TscAI | CASTG | 4 cut(s) | 330, 982, 1284, 2719 |
| TseI | GCWGC | 7 cut(s) | 125, 389, 1289, 1676, 1866, 2078, 2276 |
| TspGWI | ACGGA | 3 cut(s) | 554, 866, 2371 |
| TspRI | CASTG | 4 cut(s) | 330, 982, 1284, 2719 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2674 |
| VpaK11BI | GGWCC | 3 cut(s) | 259, 319, 2381 |
| XapI | RAATTY | 4 cut(s) | 8, 559, 665, 1460 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 143 |
| XmiI | GTMKAC | 3 cut(s) | 1716, 2127, 2423 |
| XmnI | GAANNNNTTC | 1 cut(s) | 249 |
| XspI | CTAG | 3 cut(s) | 1274, 1299, 2594 |
| Zsp2I | ATGCAT | 1 cut(s) | 616 |