Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011329

Physical Location & Seq

Genomic Coordinates Reverse (-)

38843254 .. 38851983

Gene Structure 8730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3315 bp

ATGGACTCCATTCTCTCTCTCCGTCCCCTCCCCAATCTCTTCACCCCTCACCGCAACCCCTCCTCCTCACTTTTCACGCCCAACCGCCGCATCAAATTCCAAACCAAATCCTCCAGAACCTCTCCAATTCGTCACACTCCCAAACCATTCGTCTCTCCAGAACCTTCCTCGAGCTCAAAGCACGAAGAAAGCCCGATTCTCGCTGTCGCAAGGCAGGTGGTGCTCGCCGCGGTCTGTTTCGGGATCGGCTTCGCTCCGTTCCGGCCGGCGATCGCGGCGGTCGCGGCTCCGGTGTCGGCGGCGGTGGTGGAGGAGAAGAAGGAGGTGAGTTACGAGAGTGAGGGCTACGCGGAGGTCAGTAAGAGGCTGCTGGAGACGGCGGCGGTGCTGGTGAGGAGAGTGGAGGAGGCTAGGGTTGGGAAGGGGGATGTGAAGGCGGTGGAGGAGGCGTGGCGGGCGGTGAGGGCGAAGAAGGAAGAGTTGCAAGGGGAGATATTGAGTGCGGTGCAGGTGGAGCTGACGAGGTTGAGGAGGAGCAAGGAGGGGCTGGTGAGGCGGTCCGATGAGATTGTGGTGGAGGTGGTGAAGGCGAGGAGGGAGATTGAGAAGGCGGTGTTGCGAGATGATTCCGGTAAGGGGGAGGGGAAGGAGAGAGTGGAGAGGATGGAGGAGAGGGTGGGGAGGTTGGAGGAGGAGTATAGTGAGGTTTGGGAGAGTGTGGGAGAGATTGAGGATGAGATTTCGAGGAGGGAGACGCTGGCGTTGAGCTATGGAGTTAGGGAGCTTTGTTTTATTGAGAGGGAGTGTGAGCAGTTGGTGCAGAGTTTTACCCGCCAAATGAGGAGGAAGAGTGTTGAAAGTGTGCCAAAAAAATCCGTTACCAAGCTTTCTAAATCTGATATACAGAAAGATTTGGAAAACACGCAAAGAAGTCTTTTGGAGCAAACGATTCTGCCGAATGTTGTGGAAGTTGATGATGTGGGACCTTTGTTTACTTCAACGGAGTTTGCTCACAATATAAAAAATGGCCTTGAGGAGTCAAGGAAGCTGCAGATAAAGGCTGAGTCTCAAATAAGGAAGAAAGTGAAAAAATTTGGCGATGAAAAGCGGTATCTTGTACAAACACCAGAAGATGAGGTGCTGAAGGGCTTTCCAGAAGTTGAGTTGAAGTGGATGTTTGGAGAGAAGGAGGTTGTCGTCCCTAAAGCTGCTGGCCTCCATTTATACCATGGGTGGAAGAAGTGGCGTGAAGAAGCTAAGGCAGACCTGAAAAGAAATCTCATAGAAGATGTTGATTTTGGTAAACAGTACATGGCCAAAAGACAGGAACTAATTCTTCTGGATCGAGATAGGCTGGTGTCAAAGACTTGGTACAATGAGGAAAAAAATAGGTGGGAAATGGACCCAGTGGCTGTTCCTTTTGCCGTCTCAAAGAAACTGGTGGAGCATGCTCGTATTAGGCATGATTGGGCTGCCATGTACATTGCACTCAAGGGTGATGACAAGGAATATTATGTTGACATTAAGGAATATGAAATGCTCTTCGAAGATTTTGGAGGGTTTGATGGGTTGTACATGAAAATGCTTGCCTGTGGTATTCCAACTGCTGTTCACCTGATGTGGATCCCTTTGTCTGAGTTGAATTTCTGTCAACAATTTCTCTTGACTGTCAGGCTGTCTCACCAATGTCTTAATGCATTGTGGAAGACAACAATAGTATCGTATGCAAGAGATTGGGTTATGCAGAAATTTAGAAATATAAACGACGACATAATGATGACAATAGTGTTTCCCATTGTGGAGCTTATACTACCCTACTATGTAAGGATACAGTTGGGGATGGCATGGCCTGAGGAAATTGATCAAGCTGTTGACTCAACGTGGTACTTGAAATGGCAATCTGAGGCAGAAACAAATTACAAATCCAGAAAAACGGATGATATCCAATGGTACATTTGGTTTCTCATTAGAACCGTTGCGTATGGATACATTGTGTTTCATGTTTTTGGTTTCCTGAAGAGAGAAGTACCAACTGTTCTTGGTTATGGGCCAATACGCACTGATCCAAACAGGGATAAGTTGAAGAGAGTGAAATACTATCTTAATTATCGGGTGAGGAAAGTTAAACAGAACAAAAAGGCTGGTGTTGATCCTATAACACGTGCTTTTGACCAAATGAAGAGGGTAAAGAACCCACCAATACCATTGAAGGACTTTGCGAGTATTGAATCCATGAAAGAGGAAATCAATGAAGTTGTGGCATTTCTTAAAAATCCTGGAGCCTTTCAAGAAATGGGTGCCCGCGCACCTCGGGGAGTTCTAATTGTGGGTGAGAGGGGAACAGGAAAGACATCTCTAGCACTGGCTATAGCTGCTCAAGCTAGGGTGCCTGTTGTTAACATTAAAGCTCAAGAGTTGGAGGCTGGACTATGGGTTGGGCAAAGTGCATCTAATGTTAGAGAGCTGTTTCAAACAGCCAGAGAATTGGCACCTGTTATCATATTTGTGGAGGATTTTGACCTCTTTGCTGGTGTTCGAGGCAAATTCATTCACACTAAAAATCAGGATCATGAGGCTTTTATCAATCAACTGCTTGTGGAACTTGATGGTTTTGAGAAACAAGATGGGGTTGTATTGATGGCTACTACTGGAAATCTCAAGCAAATTGATAATGCCTTAAAGCGGCTTGGTCGCATGGATAGAGTATTTCATCTTCAAAGGCCAACTCAAGCAGAAAGGGAGAAGATACTACACATAGCTGCAAAAGAAACAATGGATAATGAGCTCATTGATTTTGTAGACTGGAGAAAGTGGACAAGGGAGACCAAGTTCTGGGCTGCAGGTCACGGTCACATTGCACTTCTGTTGCCAAACTTTGATGTTGTAGACAATATATTATATATGGCTGGAGCCATTTTGTCTTCCTCAAAAATGCTGAAATTGGCTATTTGCTTTCCTCTGATTCTGATATGTAGTGGGTTGTTGTTTGTGTGGATTTTGAAAGGTTTAACATCGATGGAAGTACTTATGCATTTCACTTTTGTTTCATACATAAATGATCACTATATCGATTCGAAGTTTGTAAGTAACATTGGTTGGTATATATTAGCATATGTATATGACTTCTATTTGGACAACTTGACTTGCAACTTTCAATATTTAAATCATAAGCATAACAATTGGATATATGCACTTTTGGATGGCATGCAGAAGTTTATTTTTGGTGTAGTGATTGGTGTAATTGAGAATATGTTATTTTGGATTTCAGTTGCTTTTGTGGATCCACCGTTGTCTAAGTCAGTGTTGTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

1104

Amino Acids

127.2

Weight (kDa)

8.42

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	773 - 906	7.1e-30	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04340
fragaria_vesca	FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550 FvH4_6g01550
malus_domestica	MD04G1232400.v1.1
prunus_persica	Prupe.6G352000_v2.0.a1
pyrus_communis	pycom04g20580
rosa_chinensis	RchiOBHm_Chr3g0449311
rosa_laevigata	RLG00000025840
rosa_multiflora	Rmu_sc0007719.1_g000003
rosa_roxburghii	Rroxscaffold_6G00427310
rosa_rugosa	Rorug02G0619600
rosa_samantha	Rh3AG017600 Rh3BG017700 Rh3CG016700 Rh3DG018000
rosa_wichuraiana	Rw1G017600 Rw3G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	205, 499
Acc36I	ACCTGC	3 cut(s)	205, 499, 2831
AccB1I	GGYRCC	3 cut(s)	2297, 2386, 2488
AccB7I	CCANNNNNTGG	1 cut(s)	2832
AccI	GTMKAC	2 cut(s)	2799, 2886
AccII	CGCG	5 cut(s)	230, 275, 284, 350, 2304
AclWI	GGATC	9 cut(s)	251, 1350, 1618, 1631, 2057, 2144, 2574, 3275, 3288
AcoI	YGGCCR	2 cut(s)	263, 1314
AcsI	RAATTY	5 cut(s)	95, 1091, 1642, 1748, 2543
AcuI	CTGAAG	2 cut(s)	1163, 2036
AcvI	CACGTG	1 cut(s)	2162
AfaI	GTAC	9 cut(s)	1119, 1310, 1373, 1481, 1574, 1886, 1952, 2028, 3024
AfiI	CCNNNNNNNGG	3 cut(s)	636, 2682, 2832
AflIII	ACRYGT	1 cut(s)	2159
AjnI	CCWGG	1 cut(s)	2275
AloI	GAACNNNNNNTCC	2 cut(s)	2813, 2845
Alw21I	GWGCWC	3 cut(s)	176, 225, 2787
Alw26I	GTCTC	7 cut(s)	157, 368, 746, 1071, 1432, 1683, 2816
AlwI	GGATC	9 cut(s)	251, 1350, 1618, 1631, 2057, 2144, 2574, 3275, 3288
AlwNI	CAGNNNCTG	1 cut(s)	1412
Ama87I	CYCGRG	2 cut(s)	169, 2310
AoxI	GGCC	7 cut(s)	263, 1027, 1213, 1314, 1847, 2048, 2720
ApeKI	GCWGC	7 cut(s)	367, 1048, 1208, 1472, 2372, 2759, 2837
ApoI	RAATTY	5 cut(s)	95, 1091, 1642, 1748, 2543
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AsiSI	GCGATCGC	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	1332
AspLEI	GCGC	1 cut(s)	2306
AspS9I	GGNCC	4 cut(s)	558, 983, 1402, 2048
AsuII	TTCGAA	2 cut(s)	1545, 3074
AvaI	CYCGRG	2 cut(s)	169, 2310
AvaII	GGWCC	3 cut(s)	558, 983, 1402
AxyI	CCTNAGG	1 cut(s)	1851
BaeGI	GKGCMC	1 cut(s)	2302
BaeI	ACNNNNGTAYC	2 cut(s)	1701, 1734
BalI	TGGCCA	1 cut(s)	1316
BamHI	GGATCC	2 cut(s)	1623, 3280
BanI	GGYRCC	3 cut(s)	2297, 2386, 2488
BanII	GRGCYC	2 cut(s)	176, 2787
BarI	GAAGNNNNNNTAC	2 cut(s)	2697, 2729
BbrPI	CACGTG	1 cut(s)	2162
BbsI	GAAGAC	2 cut(s)	1712, 2913
Bbv12I	GWGCWC	3 cut(s)	176, 225, 2787
BbvI	GCAGC	7 cut(s)	354, 1035, 1195, 1459, 2359, 2746, 2824
BccI	CCATC	8 cut(s)	658, 1559, 1834, 2600, 2618, 2632, 3010, 3194
BceAI	ACGGC	2 cut(s)	393, 1409
BciT130I	CCWGG	1 cut(s)	2277
BciVI	GTATCC	2 cut(s)	1821, 1979
BclI	TGATCA	2 cut(s)	1861, 3058
BcoDI	GTCTC	7 cut(s)	157, 368, 746, 1071, 1432, 1683, 2816
BfaI	CTAG	3 cut(s)	411, 2357, 2382
BfmI	CTRYAG	3 cut(s)	1049, 2367, 2838
BfuAI	ACCTGC	3 cut(s)	205, 499, 2831
BfuI	GTATCC	2 cut(s)	1821, 1979
BmcAI	AGTACT	1 cut(s)	3024
Bme1390I	CCNGG	1 cut(s)	2277
Bme18I	GGWCC	3 cut(s)	558, 983, 1402
BmeT110I	CYCGRG	2 cut(s)	169, 2310
BmgT120I	GGNCC	4 cut(s)	558, 983, 1402, 2048
BmrFI	CCNGG	1 cut(s)	2277
BmrI	ACTGGG	1 cut(s)	1400
BmsI	GCATC	2 cut(s)	99, 2456
BmuI	ACTGGG	1 cut(s)	1400
BpiI	GAAGAC	2 cut(s)	1712, 2913
BpmI	CTGGAG	6 cut(s)	97, 141, 392, 2298, 2824, 2928
Bpu10I	CCTNAGC	1 cut(s)	1257
Bpu14I	TTCGAA	2 cut(s)	1545, 3074
BpuEI	CTTGAG	6 cut(s)	1052, 1475, 2361, 2394, 2642, 2712
Bsa29I	ATCGAT	2 cut(s)	3014, 3069
BsaAI	YACGTR	1 cut(s)	2162
BsaBI	GATNNNNATC	1 cut(s)	1622
BsaI	GGTCTC	1 cut(s)	2816
BsaJI	CCNNGG	3 cut(s)	228, 1228, 2309
BsaWI	WCCGGW	2 cut(s)	289, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	636, 2682, 2832
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	5 cut(s)	1406, 1443, 2367, 2653, 2807
Bse21I	CCTNAGG	1 cut(s)	1851
Bse3DI	GCAATG	2 cut(s)	1482, 2853
Bse8I	GATNNNNATC	1 cut(s)	1622
BseBI	CCWGG	1 cut(s)	2277
BseCI	ATCGAT	2 cut(s)	3014, 3069
BseDI	CCNNGG	3 cut(s)	228, 1228, 2309
BseGI	GGATG	7 cut(s)	433, 669, 739, 1179, 1845, 1942, 3205
BseJI	GATNNNNATC	1 cut(s)	1622
BseLI	CCNNNNNNNGG	3 cut(s)	636, 2682, 2832
BseMI	GCAATG	2 cut(s)	1482, 2853
BseMII	CTCAG	4 cut(s)	1053, 1626, 1842, 1893
BseNI	ACTGG	5 cut(s)	1406, 1443, 2367, 2653, 2807
BseSI	GKGCMC	1 cut(s)	2302
BseX3I	CGGCCG	1 cut(s)	263
BseXI	GCAGC	7 cut(s)	354, 1035, 1195, 1459, 2359, 2746, 2824
BsgI	GTGCAG	2 cut(s)	527, 839
Bsh1236I	CGCG	5 cut(s)	230, 275, 284, 350, 2304
Bsh1285I	CGRYCG	3 cut(s)	266, 273, 282
BshFI	GGCC	7 cut(s)	265, 1029, 1215, 1316, 1849, 2050, 2722
BshNI	GGYRCC	3 cut(s)	2297, 2386, 2488
BshVI	ATCGAT	2 cut(s)	3014, 3069
BsiEI	CGRYCG	3 cut(s)	266, 273, 282
BsiHKAI	GWGCWC	3 cut(s)	176, 225, 2787
BsiHKCI	CYCGRG	2 cut(s)	169, 2310
BsiSI	CCGG	4 cut(s)	262, 266, 290, 630
BslFI	GGGAC	3 cut(s)	9, 996, 1184
BslI	CCNNNNNNNGG	3 cut(s)	636, 2682, 2832
BsmAI	GTCTC	7 cut(s)	157, 368, 746, 1071, 1432, 1683, 2816
BsmBI	CGTCTC	4 cut(s)	157, 368, 746, 1432
BsmFI	GGGAC	3 cut(s)	9, 996, 1184
BsnI	GGCC	7 cut(s)	265, 1029, 1215, 1316, 1849, 2050, 2722
Bso31I	GGTCTC	1 cut(s)	2816
BsoBI	CYCGRG	2 cut(s)	169, 2310
Bsp119I	TTCGAA	2 cut(s)	1545, 3074
Bsp1286I	GDGCHC	4 cut(s)	176, 225, 2302, 2787
Bsp1407I	TGTACA	3 cut(s)	1117, 1479, 1572
Bsp19I	CCATGG	1 cut(s)	1228
BspANI	GGCC	7 cut(s)	265, 1029, 1215, 1316, 1849, 2050, 2722
BspCNI	CTCAG	4 cut(s)	1054, 1627, 1843, 1894
BspDI	ATCGAT	2 cut(s)	3014, 3069
BspFNI	CGCG	5 cut(s)	230, 275, 284, 350, 2304
BspHI	TCATGA	1 cut(s)	2569
BspMAI	CTGCAG	2 cut(s)	1053, 2842
BspMI	ACCTGC	3 cut(s)	205, 499, 2831
BspPI	GGATC	9 cut(s)	251, 1350, 1618, 1631, 2057, 2144, 2574, 3275, 3288
BspQI	GCTCTTC	1 cut(s)	1547
BspT104I	TTCGAA	2 cut(s)	1545, 3074
BspT107I	GGYRCC	3 cut(s)	2297, 2386, 2488
BspTNI	GGTCTC	1 cut(s)	2816
BsrDI	GCAATG	2 cut(s)	1482, 2853
BsrFI	RCCGGY	1 cut(s)	265
BsrGI	TGTACA	3 cut(s)	1117, 1479, 1572
BsrI	ACTGG	5 cut(s)	1406, 1443, 2367, 2653, 2807
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	228, 1228, 2309
BssT1I	CCWWGG	1 cut(s)	1228
Bst2UI	CCWGG	1 cut(s)	2277
Bst4CI	ACNGT	7 cut(s)	1308, 1669, 1833, 1975, 2035, 2849, 3288
Bst6I	CTCTTC	7 cut(s)	44, 471, 842, 1547, 2012, 2078, 2174
BstAPI	GCANNNNNTGC	2 cut(s)	220, 817
BstAUI	TGTACA	3 cut(s)	1117, 1479, 1572
BstBAI	YACGTR	1 cut(s)	2162
BstBI	TTCGAA	2 cut(s)	1545, 3074
BstC8I	GCNNGC	9 cut(s)	225, 267, 456, 759, 1213, 1449, 1587, 2302, 3206
BstDEI	CTNAG	6 cut(s)	1062, 1257, 1635, 1851, 1902, 3294
BstDSI	CCRYGG	2 cut(s)	228, 1228
BstF5I	GGATG	7 cut(s)	433, 669, 739, 1179, 1845, 1942, 3205
BstFNI	CGCG	5 cut(s)	230, 275, 284, 350, 2304
BstHHI	GCGC	1 cut(s)	2306
BstMAI	GTCTC	7 cut(s)	157, 368, 746, 1071, 1432, 1683, 2816
BstMCI	CGRYCG	3 cut(s)	266, 273, 282
BstNI	CCWGG	1 cut(s)	2277
BstNSI	RCATGY	2 cut(s)	1451, 3208
BstSCI	CCNGG	1 cut(s)	2275
BstSFI	CTRYAG	3 cut(s)	1049, 2367, 2838
BstSLI	GKGCMC	1 cut(s)	2302
BstUI	CGCG	5 cut(s)	230, 275, 284, 350, 2304
BstV1I	GCAGC	7 cut(s)	354, 1035, 1195, 1459, 2359, 2746, 2824
BstV2I	GAAGAC	2 cut(s)	1712, 2913
BstX2I	RGATCY	2 cut(s)	1623, 3280
BstXI	CCANNNNNNTGG	1 cut(s)	2485
BstYI	RGATCY	2 cut(s)	1623, 3280
BstZI	CGGCCG	1 cut(s)	263
Bsu15I	ATCGAT	2 cut(s)	3014, 3069
Bsu36I	CCTNAGG	1 cut(s)	1851
BsuI	GTATCC	2 cut(s)	1821, 1979
BsuRI	GGCC	7 cut(s)	265, 1029, 1215, 1316, 1849, 2050, 2722
BsuTUI	ATCGAT	2 cut(s)	3014, 3069
BtgI	CCRYGG	2 cut(s)	228, 1228
BtgZI	GCGATG	1 cut(s)	1113
BtsCI	GGATG	7 cut(s)	433, 669, 739, 1179, 1845, 1942, 3205
BtsIMutI	CAGTG	4 cut(s)	1413, 2058, 2360, 3306
BveI	ACCTGC	3 cut(s)	205, 499, 2831
Cac8I	GCNNGC	9 cut(s)	225, 267, 456, 759, 1213, 1449, 1587, 2302, 3206
CaiI	CAGNNNCTG	1 cut(s)	1412
CciI	TCATGA	1 cut(s)	2569
CfoI	GCGC	1 cut(s)	2306
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	4 cut(s)	558, 983, 1402, 2048
Cfr42I	CCGCGG	1 cut(s)	231
ClaI	ATCGAT	2 cut(s)	3014, 3069
CpoI	CGGWCCG	1 cut(s)	558
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	9 cut(s)	1118, 1309, 1372, 1480, 1573, 1885, 1951, 2027, 3023
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CspI	CGGWCCG	1 cut(s)	558
CviQI	GTAC	9 cut(s)	1118, 1309, 1372, 1480, 1573, 1885, 1951, 2027, 3023
DdeI	CTNAG	6 cut(s)	1062, 1257, 1635, 1851, 1902, 3294
DraI	TTTAAA	1 cut(s)	3162
EaeI	YGGCCR	2 cut(s)	263, 1314
EagI	CGGCCG	1 cut(s)	263
Eam1104I	CTCTTC	7 cut(s)	44, 471, 842, 1547, 2012, 2078, 2174
EarI	CTCTTC	7 cut(s)	44, 471, 842, 1547, 2012, 2078, 2174
Ecl136II	GAGCTC	2 cut(s)	174, 2785
EclXI	CGGCCG	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	1228
Eco24I	GRGCYC	2 cut(s)	176, 2787
Eco31I	GGTCTC	1 cut(s)	2816
Eco32I	GATATC	1 cut(s)	1942
Eco47I	GGWCC	3 cut(s)	558, 983, 1402
Eco52I	CGGCCG	1 cut(s)	263
Eco53kI	GAGCTC	2 cut(s)	174, 2785
Eco57I	CTGAAG	2 cut(s)	1163, 2036
Eco72I	CACGTG	1 cut(s)	2162
Eco81I	CCTNAGG	1 cut(s)	1851
Eco88I	CYCGRG	2 cut(s)	169, 2310
EcoICRI	GAGCTC	2 cut(s)	174, 2785
EcoO109I	RGGNCCY	1 cut(s)	983
EcoRII	CCWGG	1 cut(s)	2275
EcoRV	GATATC	1 cut(s)	1942
EcoT14I	CCWWGG	1 cut(s)	1228
EcoT22I	ATGCAT	2 cut(s)	1699, 3033
EcoT38I	GRGCYC	2 cut(s)	176, 2787
ErhI	CCWWGG	1 cut(s)	1228
Esp3I	CGTCTC	4 cut(s)	157, 368, 746, 1432
FaqI	GGGAC	3 cut(s)	9, 996, 1184
FauI	CCCGC	3 cut(s)	447, 839, 2309
FauNDI	CATATG	1 cut(s)	3112
FbaI	TGATCA	2 cut(s)	1861, 3058
FblI	GTMKAC	2 cut(s)	2799, 2886
FokI	GGATG	7 cut(s)	440, 676, 746, 1186, 1852, 1949, 3212
FriOI	GRGCYC	2 cut(s)	176, 2787
FspBI	CTAG	3 cut(s)	411, 2357, 2382
GlaI	GCGC	1 cut(s)	2305
GsuI	CTGGAG	6 cut(s)	97, 141, 392, 2298, 2824, 2928
HaeIII	GGCC	7 cut(s)	265, 1029, 1215, 1316, 1849, 2050, 2722
HapII	CCGG	4 cut(s)	262, 266, 290, 630
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	1 cut(s)	2306
Hin6I	GCGC	1 cut(s)	2304
HinP1I	GCGC	1 cut(s)	2304
HincII	GTYRAC	4 cut(s)	1519, 1652, 1873, 2398
HindII	GTYRAC	4 cut(s)	1519, 1652, 1873, 2398
HindIII	AAGCTT	1 cut(s)	884
HpaI	GTTAAC	1 cut(s)	2398
HpaII	CCGG	4 cut(s)	262, 266, 290, 630
Hpy188I	TCNGA	6 cut(s)	562, 898, 1636, 1903, 2961, 2967
Hpy99I	CGWCG	1 cut(s)	1769
HpyCH4III	ACNGT	7 cut(s)	1308, 1669, 1833, 1975, 2035, 2849, 3288
HpyCH4IV	ACGT	2 cut(s)	1880, 2161
HpyF3I	CTNAG	6 cut(s)	1062, 1257, 1635, 1851, 1902, 3294
HpySE526I	ACGT	2 cut(s)	1880, 2161
HspAI	GCGC	1 cut(s)	2304
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	2 cut(s)	1861, 3058
KspAI	GTTAAC	1 cut(s)	2398
KspI	CCGCGG	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	1547
Lsp1109I	GCAGC	7 cut(s)	354, 1035, 1195, 1459, 2359, 2746, 2824
LweI	GCATC	2 cut(s)	99, 2456
MaeI	CTAG	3 cut(s)	411, 2357, 2382
MaeII	ACGT	2 cut(s)	1880, 2161
MaeIII	GTNAC	6 cut(s)	131, 329, 877, 2843, 2849, 3086
MfeI	CAATTG	1 cut(s)	3178
MflI	RGATCY	2 cut(s)	1623, 3280
MhlI	GDGCHC	4 cut(s)	176, 225, 2302, 2787
MlsI	TGGCCA	1 cut(s)	1316
MluNI	TGGCCA	1 cut(s)	1316
MlyI	GAGTC	3 cut(s)	1046, 1073, 1868
MmeI	TCCRAC	3 cut(s)	666, 1625, 2397
Mox20I	TGGCCA	1 cut(s)	1316
Mph1103I	ATGCAT	2 cut(s)	1699, 3033
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	1332
MscI	TGGCCA	1 cut(s)	1316
MslI	CAYNNNNRTG	3 cut(s)	1580, 1775, 2504
Msp20I	TGGCCA	1 cut(s)	1316
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	4 cut(s)	262, 266, 290, 630
MspR9I	CCNGG	1 cut(s)	2277
MunI	CAATTG	1 cut(s)	3178
MvaI	CCWGG	1 cut(s)	2277
MvnI	CGCG	5 cut(s)	230, 275, 284, 350, 2304
NaeI	GCCGGC	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	1228
NdeI	CATATG	1 cut(s)	3112
NgoMIV	GCCGGC	1 cut(s)	265
NmuCI	GTSAC	3 cut(s)	131, 2843, 2849
NsiI	ATGCAT	2 cut(s)	1699, 3033
NspI	RCATGY	2 cut(s)	1451, 3208
NspV	TTCGAA	2 cut(s)	1545, 3074
PaeI	GCATGC	2 cut(s)	1451, 3208
PaeR7I	CTCGAG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	2569
PaqCI	CACCTGC	2 cut(s)	205, 499
PciSI	GCTCTTC	1 cut(s)	1547
PcsI	WCGNNNNNNNCGW	1 cut(s)	953
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	1332
PfeI	GAWTC	6 cut(s)	196, 626, 949, 2228, 2962, 3071
PflMI	CCANNNNNTGG	1 cut(s)	2832
PfoI	TCCNGGA	1 cut(s)	2275
Ple19I	CGATCG	1 cut(s)	273
PleI	GAGTC	3 cut(s)	1045, 1072, 1868
PmaCI	CACGTG	1 cut(s)	2162
PmlI	CACGTG	1 cut(s)	2162
PpsI	GAGTC	3 cut(s)	1045, 1072, 1868
Ppu21I	YACGTR	1 cut(s)	2162
PpuMI	RGGWCCY	1 cut(s)	983
Psp124BI	GAGCTC	2 cut(s)	176, 2787
Psp5II	RGGWCCY	1 cut(s)	983
Psp6I	CCWGG	1 cut(s)	2275
PspCI	CACGTG	1 cut(s)	2162
PspGI	CCWGG	1 cut(s)	2275
PspPI	GGNCC	4 cut(s)	558, 983, 1402, 2048
PspPPI	RGGWCCY	1 cut(s)	983
PspXI	VCTCGAGB	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	2019, 2051
PstI	CTGCAG	2 cut(s)	1053, 2842
PstNI	CAGNNNCTG	1 cut(s)	1412
PsuI	RGATCY	2 cut(s)	1623, 3280
PvuI	CGATCG	1 cut(s)	273
RgaI	GCGATCGC	1 cut(s)	273
RsaI	GTAC	9 cut(s)	1119, 1310, 1373, 1481, 1574, 1886, 1952, 2028, 3024
RsaNI	GTAC	9 cut(s)	1118, 1309, 1372, 1480, 1573, 1885, 1951, 2027, 3023
RseI	CAYNNNNRTG	3 cut(s)	1580, 1775, 2504
Rsr2I	CGGWCCG	1 cut(s)	558
RsrII	CGGWCCG	1 cut(s)	558
SacI	GAGCTC	2 cut(s)	176, 2787
SacII	CCGCGG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	1547
Sau96I	GGNCC	4 cut(s)	558, 983, 1402, 2048
ScaI	AGTACT	1 cut(s)	3024
SchI	GAGTC	3 cut(s)	1046, 1073, 1868
ScrFI	CCNGG	1 cut(s)	2277
SduI	GDGCHC	4 cut(s)	176, 225, 2302, 2787
SfaAI	GCGATCGC	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	99, 2456
SfcI	CTRYAG	3 cut(s)	1049, 2367, 2838
Sfr274I	CTCGAG	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	2 cut(s)	1545, 3074
SgfI	GCGATCGC	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	3 cut(s)	558, 983, 1402
SlaI	CTCGAG	1 cut(s)	169
SmiI	ATTTAAAT	1 cut(s)	3162
SmiMI	CAYNNNNRTG	3 cut(s)	1580, 1775, 2504
SmlI	CTYRAG	7 cut(s)	169, 1031, 1490, 2376, 2409, 2657, 2727
SmoI	CTYRAG	7 cut(s)	169, 1031, 1490, 2376, 2409, 2657, 2727
SphI	GCATGC	2 cut(s)	1451, 3208
SspI	AATATT	2 cut(s)	1511, 3158
SspMI	CTAG	3 cut(s)	411, 2357, 2382
SstI	GAGCTC	2 cut(s)	176, 2787
StyD4I	CCNGG	1 cut(s)	2275
StyI	CCWWGG	1 cut(s)	1228
SwaI	ATTTAAAT	1 cut(s)	3162
TaaI	ACNGT	7 cut(s)	1308, 1669, 1833, 1975, 2035, 2849, 3288
TaiI	ACGT	2 cut(s)	1883, 2164
TaqI	TCGA	8 cut(s)	170, 743, 1345, 1545, 2536, 3014, 3069, 3074
TatI	WGTACW	5 cut(s)	1117, 1308, 1479, 1572, 3022
TauI	GCSGC	7 cut(s)	90, 230, 278, 287, 302, 383, 2686
TfiI	GAWTC	6 cut(s)	196, 626, 949, 2228, 2962, 3071
TscAI	CASTG	4 cut(s)	1413, 2065, 2367, 3306
TseFI	GTSAC	3 cut(s)	131, 2843, 2849
TseI	GCWGC	7 cut(s)	367, 1048, 1208, 1472, 2372, 2759, 2837
Tsp45I	GTSAC	3 cut(s)	131, 2843, 2849
TspGWI	ACGGA	5 cut(s)	11, 246, 865, 1016, 1949
TspRI	CASTG	4 cut(s)	1413, 2065, 2367, 3306
Van91I	CCANNNNNTGG	1 cut(s)	2832
VpaK11BI	GGWCC	3 cut(s)	558, 983, 1402
XapI	RAATTY	5 cut(s)	95, 1091, 1642, 1748, 2543
XceI	RCATGY	2 cut(s)	1451, 3208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1226
XhoI	CTCGAG	1 cut(s)	169
XmiI	GTMKAC	2 cut(s)	2799, 2886
XmnI	GAANNNNTTC	1 cut(s)	1332
XspI	CTAG	3 cut(s)	411, 2357, 2382
ZrmI	AGTACT	1 cut(s)	3024
Zsp2I	ATGCAT	2 cut(s)	1699, 3033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.