Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008212

Physical Location & Seq

Genomic Coordinates Reverse (-)

11179390 .. 11180891

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAACGTTCCAGCAGAGCCAGAGATAGTTCTGAACTTTCTCCTAGAGACCCTCCTCCACCTCCAAGGTCCAGAGAAAATGGCTGATATCTTTACACTTGGAGAAGGTATTCTTCCTGCGAGCTTTAAGGTTTCAAATGATTCAGATCGTGCCAAGGAAACTATCGTTGCAAATTTTGGTCGTACCGCAATTGGAAGAGTTGCTCCGGTTGATTCTGGATTCTGGTGGATCACATATGACACATGTACTACTCGTGACACATTTCCAACACTTCTTTGTGCAGATGGCTGCAGTATGATTGACAGGCAAATGGGCATAAATGGTGATACAACTGACATCCCAGCAGTTTTCTGCTTTGAATTGAGGGCTGCAATGCAGCTGTCAAAGCCAGAGTGTGAAAGGATGGAAGTTCTTGAGAGGATAGCACTGTTTTGGCCGCTGACTTCCAGGACTGGGAGGTCTCTTATTGCACAAAGGGCAATAGATCTGGCTGCTCAAGCTACTGGTGGTACCTTGCCGGCTGCTTCTACTCCAGCGCCGCAAGAGGGTGGAGCTAAATCAGCTAATGGTCCGTCAGCAGTCAAACGCAAGAGGGAGGCCTCTGATGAAGCATCTCGCGTTAACCGCAGGCGTATTGAGGAGAAGGATTTAAAACACGTATTGGACGCAGTCATCAGGAATTTAGATGGAGGAATTGGTATGGAGGTGTACTGGATCGACGGATTTAATGTCGCAGAATTCCTCGGGAGAGTTGAGGGAGTGGAGGTGATGGGGAATTTCCAGCAGCTTGAGGGTGCTGTAGCAGCCGTTCTAGTTCAGAACCAACGCGCTATCGATACACCGAAAATTTATTTTTCCTTGTGGACCACGCAGAGGTTCGTTGGAATCTCGATAGACACAACTCCTTGGCCTCGCTTCAGGGTTGAAGTCAGAGGGGTTCATGTGTACGAGCACCCAGGGGATGAAGTAGAAGATGTTAGGAACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

330

Amino Acids

36.34

Weight (kDa)

5.08

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_100	PF12899	6 - 78	3.2e-20	Alkaline and neutral invertase
Glyco_hydro_100	PF12899	86 - 141	4.4e-10	Alkaline and neutral invertase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22650 AT1G22650 AT1G72000
fragaria_vesca	FvH4_7g16940 FvH4_7g21580
malus_domestica	MD01G1084000.v1.1
prunus_persica	Prupe.2G191400_v2.0.a1 Prupe.2G191400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360191
rosa_laevigata	RLG00000027391 RLG00000027392 RLG00000027393 RLG00000027821
rosa_multiflora	Rmu_sc0004311.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296310
rosa_rugosa	Rorug01G0275800 Rorug01G0324500.1
rosa_samantha	Rh1AG289500 Rh1AG333700 Rh1BG255100 Rh1CG272500 Rh1DG284600
rosa_wichuraiana	Rw1G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccII	CGCG	2 cut(s)	618, 828
AciI	CCGC	4 cut(s)	186, 437, 539, 625
AclI	AACGTT	1 cut(s)	6
AclWI	GGATC	2 cut(s)	236, 722
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	5 cut(s)	172, 679, 737, 775, 846
AcuI	CTGAAG	1 cut(s)	901
AfaI	GTAC	5 cut(s)	184, 247, 511, 710, 947
AfiI	CCNNNNNNNGG	3 cut(s)	453, 545, 873
AflIII	ACRYGT	2 cut(s)	242, 655
AgsI	TTSAA	3 cut(s)	135, 359, 926
AjnI	CCWGG	2 cut(s)	446, 955
AluBI	AGCT	6 cut(s)	123, 379, 500, 554, 563, 787
AluI	AGCT	6 cut(s)	123, 379, 500, 554, 563, 787
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	2 cut(s)	41, 465
AlwI	GGATC	2 cut(s)	236, 722
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	3 cut(s)	434, 597, 908
ApeKI	GCWGC	7 cut(s)	288, 368, 376, 491, 521, 784, 803
ApoI	RAATTY	5 cut(s)	172, 679, 737, 775, 846
Asp700I	GAANNNNTTC	1 cut(s)	108
Asp718I	GGTACC	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	538, 830
AspS9I	GGNCC	3 cut(s)	68, 569, 864
AsuHPI	GGTGA	2 cut(s)	335, 778
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	3 cut(s)	68, 569, 864
BanI	GGYRCC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	7 cut(s)	275, 355, 388, 478, 508, 796, 815
BccI	CCATC	4 cut(s)	278, 397, 680, 763
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	2 cut(s)	448, 957
BcoDI	GTCTC	2 cut(s)	41, 465
BfaI	CTAG	2 cut(s)	44, 812
BfmI	CTRYAG	2 cut(s)	289, 798
BfoI	RGCGCY	1 cut(s)	539
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	9 cut(s)	289, 369, 377, 437, 492, 522, 539, 785, 804
BlsI	GCNGC	9 cut(s)	290, 370, 378, 438, 493, 523, 540, 786, 805
Bme1390I	CCNGG	2 cut(s)	448, 957
Bme18I	GGWCC	3 cut(s)	68, 569, 864
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	3 cut(s)	68, 569, 864
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	448, 957
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	434, 480, 809
Bsa29I	ATCGAT	1 cut(s)	834
BsaAI	YACGTR	1 cut(s)	658
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	2 cut(s)	41, 465
BsaJI	CCNNGG	6 cut(s)	64, 153, 742, 905, 955, 956
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	453, 545, 873
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	3 cut(s)	457, 508, 716
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	448, 957
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	6 cut(s)	64, 153, 742, 905, 955, 956
BseGI	GGATG	3 cut(s)	336, 408, 967
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	453, 545, 873
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	457, 508, 716
BseRI	GAGGAG	2 cut(s)	44, 653
BseXI	GCAGC	7 cut(s)	275, 355, 388, 478, 508, 796, 815
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	618, 828
BshFI	GGCC	3 cut(s)	436, 599, 910
BshNI	GGYRCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	834
BsiHKAI	GWGCWC	1 cut(s)	954
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	2 cut(s)	206, 518
BslI	CCNNNNNNNGG	3 cut(s)	453, 545, 873
BsmAI	GTCTC	2 cut(s)	41, 465
BsnI	GGCC	3 cut(s)	436, 599, 910
Bso31I	GGTCTC	2 cut(s)	41, 465
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp143I	GATC	4 cut(s)	145, 228, 484, 714
BspACI	CCGC	4 cut(s)	186, 437, 539, 625
BspANI	GGCC	3 cut(s)	436, 599, 910
BspDI	ATCGAT	1 cut(s)	834
BspFNI	CGCG	2 cut(s)	618, 828
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	293
BspPI	GGATC	2 cut(s)	236, 722
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	2 cut(s)	41, 465
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	3 cut(s)	457, 508, 716
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	6 cut(s)	64, 153, 742, 905, 955, 956
BssMI	GATC	4 cut(s)	145, 228, 484, 714
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	3 cut(s)	64, 153, 905
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	448, 957
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	121, 519, 629
BstF5I	GGATG	3 cut(s)	336, 408, 967
BstFNI	CGCG	2 cut(s)	618, 828
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	2 cut(s)	538, 830
BstKTI	GATC	4 cut(s)	148, 231, 487, 717
BstMAI	GTCTC	2 cut(s)	41, 465
BstMBI	GATC	4 cut(s)	145, 228, 484, 714
BstMWI	GCNNNNNNNGC	6 cut(s)	385, 476, 497, 560, 624, 803
BstNI	CCWGG	2 cut(s)	448, 957
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	446, 955
BstSFI	CTRYAG	2 cut(s)	289, 798
BstUI	CGCG	2 cut(s)	618, 828
BstV1I	GCAGC	7 cut(s)	275, 355, 388, 478, 508, 796, 815
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	436, 599, 910
BsuTUI	ATCGAT	1 cut(s)	834
BtsCI	GGATG	3 cut(s)	336, 408, 967
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	3 cut(s)	121, 519, 629
CfoI	GCGC	2 cut(s)	538, 830
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	3 cut(s)	68, 569, 864
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	5 cut(s)	183, 246, 510, 709, 946
CviAII	CATG	2 cut(s)	243, 941
CviQI	GTAC	5 cut(s)	183, 246, 510, 709, 946
DpnI	GATC	4 cut(s)	147, 230, 486, 716
DpnII	GATC	4 cut(s)	145, 228, 484, 714
DraI	TTTAAA	1 cut(s)	651
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco130I	CCWWGG	3 cut(s)	64, 153, 905
Eco147I	AGGCCT	1 cut(s)	599
Eco31I	GGTCTC	2 cut(s)	41, 465
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	68, 569, 864
Eco57I	CTGAAG	1 cut(s)	901
Eco88I	CYCGRG	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	737
EcoRII	CCWGG	2 cut(s)	446, 955
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	3 cut(s)	64, 153, 905
ErhI	CCWWGG	3 cut(s)	64, 153, 905
FaeI	CATG	2 cut(s)	246, 944
FaiI	YATR	7 cut(s)	235, 237, 244, 296, 317, 701, 942
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	2 cut(s)	242, 940
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	9 cut(s)	289, 369, 377, 437, 492, 522, 539, 785, 804
FokI	GGATG	3 cut(s)	323, 415, 974
Fsp4HI	GCNGC	9 cut(s)	289, 369, 377, 437, 492, 522, 539, 785, 804
FspBI	CTAG	2 cut(s)	44, 812
GlaI	GCGC	2 cut(s)	537, 829
GluI	GCNGC	9 cut(s)	289, 369, 377, 437, 492, 522, 539, 785, 804
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	539
HaeIII	GGCC	3 cut(s)	436, 599, 910
HapII	CCGG	2 cut(s)	206, 518
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	538, 830
Hin1II	CATG	2 cut(s)	246, 944
Hin6I	GCGC	2 cut(s)	536, 828
HinP1I	GCGC	2 cut(s)	536, 828
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	4 cut(s)	140, 212, 219, 885
HpaI	GTTAAC	1 cut(s)	622
HpaII	CCGG	2 cut(s)	206, 518
HphI	GGTGA	2 cut(s)	335, 778
Hpy166II	GTNNAC	4 cut(s)	622, 709, 864, 946
Hpy188I	TCNGA	5 cut(s)	33, 145, 604, 819, 932
Hpy188III	TCNNGA	7 cut(s)	71, 216, 254, 413, 676, 745, 889
Hpy8I	GTNNAC	4 cut(s)	622, 709, 864, 946
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	2 cut(s)	98, 637
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	2 cut(s)	6, 657
HpyCH4V	TGCA	6 cut(s)	170, 281, 291, 371, 376, 470
HpyF10VI	GCNNNNNNNGC	6 cut(s)	385, 476, 497, 560, 624, 803
HpySE526I	ACGT	2 cut(s)	6, 657
Hsp92II	CATG	2 cut(s)	246, 944
HspAI	GCGC	2 cut(s)	536, 828
KpnI	GGTACC	1 cut(s)	513
KroI	GCCGGC	1 cut(s)	517
KroNI	GCCGGC	1 cut(s)	519
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	145, 228, 484, 714
LmnI	GCTCC	2 cut(s)	208, 551
Lsp1109I	GCAGC	7 cut(s)	275, 355, 388, 478, 508, 796, 815
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	2 cut(s)	44, 812
MaeII	ACGT	2 cut(s)	6, 657
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	4 cut(s)	147, 230, 486, 716
MboI	GATC	4 cut(s)	145, 228, 484, 714
MboII	GAAGA	3 cut(s)	104, 207, 983
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	8 cut(s)	172, 189, 359, 679, 693, 737, 775, 846
MmeI	TCCRAC	2 cut(s)	290, 862
MroNI	GCCGGC	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	4 cut(s)	126, 621, 650, 726
MspA1I	CMGCKG	2 cut(s)	379, 439
MspI	CCGG	2 cut(s)	206, 518
MspR9I	CCNGG	2 cut(s)	448, 957
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	2 cut(s)	448, 957
MvnI	CGCG	2 cut(s)	618, 828
MwoI	GCNNNNNNNGC	6 cut(s)	385, 476, 497, 560, 624, 803
NaeI	GCCGGC	1 cut(s)	519
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	4 cut(s)	145, 228, 484, 714
NgoMIV	GCCGGC	1 cut(s)	517
NlaIII	CATG	2 cut(s)	246, 944
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	246
PasI	CCCWGGG	1 cut(s)	956
PceI	AGGCCT	1 cut(s)	599
PciI	ACATGT	1 cut(s)	242
PdiI	GCCGGC	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	4 cut(s)	140, 212, 219, 885
PflFI	GACNNNGTC	1 cut(s)	668
PfoI	TCCNGGA	1 cut(s)	446
PkrI	GCNGC	9 cut(s)	290, 370, 378, 438, 493, 523, 540, 786, 805
Ppu21I	YACGTR	1 cut(s)	658
PscI	ACATGT	1 cut(s)	242
Psp1406I	AACGTT	1 cut(s)	6
Psp6I	CCWGG	2 cut(s)	446, 955
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	2 cut(s)	446, 955
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	3 cut(s)	68, 569, 864
PsrI	GAACNNNNNNTAC	2 cut(s)	792, 824
PstI	CTGCAG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	484
PsyI	GACNNNGTC	1 cut(s)	668
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	5 cut(s)	184, 247, 511, 710, 947
RsaNI	GTAC	5 cut(s)	183, 246, 510, 709, 946
SaqAI	TTAA	4 cut(s)	126, 621, 650, 726
SatI	GCNGC	9 cut(s)	289, 369, 377, 437, 492, 522, 539, 785, 804
Sau3AI	GATC	4 cut(s)	145, 228, 484, 714
Sau96I	GGNCC	3 cut(s)	68, 569, 864
ScrFI	CCNGG	2 cut(s)	448, 957
SduI	GDGCHC	1 cut(s)	954
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	2 cut(s)	289, 798
SinI	GGWCC	3 cut(s)	68, 569, 864
SmlI	CTYRAG	3 cut(s)	413, 495, 788
SmoI	CTYRAG	3 cut(s)	413, 495, 788
Sse9I	AATT	8 cut(s)	172, 189, 359, 679, 693, 737, 775, 846
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	4 cut(s)	186, 437, 539, 625
SspMI	CTAG	2 cut(s)	44, 812
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	446, 955
StyI	CCWWGG	3 cut(s)	64, 153, 905
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	2 cut(s)	9, 660
TaqI	TCGA	3 cut(s)	717, 834, 890
TasI	AATT	8 cut(s)	172, 189, 359, 679, 693, 737, 775, 846
TatI	WGTACW	2 cut(s)	245, 708
TauI	GCSGC	2 cut(s)	439, 541
TfiI	GAWTC	4 cut(s)	140, 212, 219, 885
Tru1I	TTAA	4 cut(s)	126, 621, 650, 726
Tru9I	TTAA	4 cut(s)	126, 621, 650, 726
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	7 cut(s)	288, 368, 376, 491, 521, 784, 803
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	17, 621, 929, 978
TspGWI	ACGGA	2 cut(s)	561, 735
TspRI	CASTG	1 cut(s)	432
Tth111I	GACNNNGTC	1 cut(s)	668
VpaK11BI	GGWCC	3 cut(s)	68, 569, 864
XapI	RAATTY	5 cut(s)	172, 679, 737, 775, 846
XceI	RCATGY	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	44, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.