Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008212

Physical Location & Seq

Genomic Coordinates Reverse (-)

11181430 .. 11182068

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGAAAACACTGAAAGAATTCCTCAACGAAGAAAAGGAAGCAGAGGAGGCGGCCGCTCGGCCGCCGGCGACGAGTGCGAAGTCCTCGGAGGCAGGCGCCATGCCGGAGATAGACTCGTCGAGATCGGATCCGTCGATGAAGCTTTCGGATTTCACTGCTGATGACTCGGTGTCCTTCGAGCTTGAGCTGCTGAAGGAGATTTCTGAAGCATCCGAGAAGAACATGAAGCTAAAGCAGGAAGAGAAAGGTGCGACTCGTACTGTGGACTCAACGAAATCGGAAGAAGTTTCTGGAACCTCTAAGAAGAGCGAGAGTGCCGACTTGGCCAAGAAACATCCGATTTTGCCGGAGATGTCTACCGGAATGTGCGTGACGCCGCCGTCTGCAGGGGAGGCAAAGAAGTCGGAATCTTCGGCGGCTATGGAGGCCTGGGAGAGAATCAAGAAATCGAACGTTTACTACGGAGGCAAGCCGGTGGGGACTCTTGCTGCTATGGATCCAACGGCCGAGGCTGTTGATCACAATCAGGTTCCTGCAGCTAGATCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

185

Amino Acids

19.66

Weight (kDa)

5.0

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22650 AT1G22650 AT1G72000
fragaria_vesca	FvH4_7g16940 FvH4_7g21580
malus_domestica	MD01G1084000.v1.1
prunus_persica	Prupe.2G191400_v2.0.a1 Prupe.2G191400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360191
rosa_laevigata	RLG00000027391 RLG00000027392 RLG00000027393 RLG00000027821
rosa_multiflora	Rmu_sc0004311.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296310
rosa_rugosa	Rorug01G0275800 Rorug01G0324500.1
rosa_samantha	Rh1AG289500 Rh1AG333700 Rh1BG255100 Rh1CG272500 Rh1DG284600
rosa_wichuraiana	Rw1G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	382
AccB1I	GGYRCC	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	359
AciI	CCGC	5 cut(s)	53, 57, 65, 380, 419
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	4 cut(s)	125, 138, 494, 507
AcoI	YGGCCR	4 cut(s)	54, 62, 327, 507
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	215, 228
AcyI	GRCGYC	2 cut(s)	99, 377
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	389
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	5 cut(s)	145, 184, 190, 232, 542
AluI	AGCT	5 cut(s)	145, 184, 190, 232, 542
AlwI	GGATC	4 cut(s)	125, 138, 494, 507
AoxI	GGCC	5 cut(s)	54, 62, 327, 429, 507
ApeKI	GCWGC	3 cut(s)	190, 491, 539
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	2 cut(s)	130, 499
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	177, 478, 551
BceAI	ACGGC	2 cut(s)	367, 522
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	1 cut(s)	433
BclI	TGATCA	1 cut(s)	520
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	387, 537
BfoI	RGCGCY	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	8 cut(s)	54, 57, 65, 191, 380, 420, 492, 540
BlsI	GCNGC	8 cut(s)	55, 58, 66, 192, 381, 421, 493, 541
Bme1390I	CCNGG	1 cut(s)	433
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmiI	GGNNCC	5 cut(s)	100, 132, 298, 501, 534
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	2 cut(s)	99, 377
BsaJI	CCNNGG	3 cut(s)	87, 432, 510
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	2 cut(s)	67, 475
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	87, 432, 510
BseGI	GGATG	2 cut(s)	212, 337
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	62
BseX3I	CGGCCG	3 cut(s)	54, 62, 507
BseXI	GCAGC	3 cut(s)	177, 478, 551
Bsh1285I	CGRYCG	3 cut(s)	57, 65, 510
BshFI	GGCC	5 cut(s)	56, 64, 329, 431, 509
BshNI	GGYRCC	1 cut(s)	98
BsiEI	CGRYCG	3 cut(s)	57, 65, 510
BsiSI	CCGG	5 cut(s)	68, 107, 350, 363, 476
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	5 cut(s)	56, 64, 329, 431, 509
Bsp143I	GATC	5 cut(s)	125, 130, 499, 520, 545
BspACI	CCGC	5 cut(s)	53, 57, 65, 380, 419
BspANI	GGCC	5 cut(s)	56, 64, 329, 431, 509
BspLI	GGNNCC	5 cut(s)	100, 132, 298, 501, 534
BspMAI	CTGCAG	2 cut(s)	391, 541
BspPI	GGATC	4 cut(s)	125, 138, 494, 507
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	67, 475
BssAI	RCCGGY	2 cut(s)	67, 475
BssECI	CCNNGG	3 cut(s)	87, 432, 510
BssMI	GATC	5 cut(s)	125, 130, 499, 520, 545
BssNI	GRCGYC	2 cut(s)	99, 377
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	237, 302
BstACI	GRCGYC	2 cut(s)	99, 377
BstC8I	GCNNGC	3 cut(s)	69, 97, 473
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	212, 337
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	5 cut(s)	128, 133, 502, 523, 548
BstMBI	GATC	5 cut(s)	125, 130, 499, 520, 545
BstMCI	CGRYCG	3 cut(s)	57, 65, 510
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 77, 190, 326, 395, 428
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	2 cut(s)	387, 537
BstV1I	GCAGC	3 cut(s)	177, 478, 551
BstX2I	RGATCY	3 cut(s)	130, 499, 545
BstYI	RGATCY	3 cut(s)	130, 499, 545
BstZI	CGGCCG	3 cut(s)	54, 62, 507
BsuRI	GGCC	5 cut(s)	56, 64, 329, 431, 509
BtsCI	GGATG	2 cut(s)	212, 337
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	11, 156
Cac8I	GCNNGC	3 cut(s)	69, 97, 473
CciNI	GCGGCCGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	2 cut(s)	67, 475
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	103, 226
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	303
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	5 cut(s)	127, 132, 501, 522, 547
DpnII	GATC	5 cut(s)	125, 130, 499, 520, 545
DrdI	GACNNNNNNGTC	1 cut(s)	382
DriI	GACNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	382
EaeI	YGGCCR	4 cut(s)	54, 62, 327, 507
EagI	CGGCCG	3 cut(s)	54, 62, 507
Eam1104I	CTCTTC	2 cut(s)	237, 302
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	2 cut(s)	237, 302
EclXI	CGGCCG	3 cut(s)	54, 62, 507
Eco147I	AGGCCT	1 cut(s)	431
Eco52I	CGGCCG	3 cut(s)	54, 62, 507
Eco57I	CTGAAG	2 cut(s)	215, 228
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	431
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
FaeI	CATG	2 cut(s)	106, 229
FaiI	YATR	4 cut(s)	104, 227, 425, 497
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	2 cut(s)	102, 225
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	8 cut(s)	54, 57, 65, 191, 380, 420, 492, 540
FokI	GGATG	2 cut(s)	199, 324
Fsp4HI	GCNGC	8 cut(s)	54, 57, 65, 191, 380, 420, 492, 540
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	8 cut(s)	54, 57, 65, 191, 380, 420, 492, 540
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	5 cut(s)	56, 64, 329, 431, 509
HapII	CCGG	5 cut(s)	68, 107, 350, 363, 476
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	2 cut(s)	99, 377
Hin1II	CATG	2 cut(s)	106, 229
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	7 cut(s)	116, 167, 256, 269, 410, 441, 484
HpaII	CCGG	5 cut(s)	68, 107, 350, 363, 476
Hpy166II	GTNNAC	3 cut(s)	268, 360, 460
Hpy188I	TCNGA	8 cut(s)	91, 130, 151, 208, 217, 283, 342, 409
Hpy188III	TCNNGA	3 cut(s)	123, 294, 445
Hpy8I	GTNNAC	3 cut(s)	268, 360, 460
Hpy99I	CGWCG	3 cut(s)	76, 124, 139
HpyAV	CCTTC	2 cut(s)	187, 190
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	2 cut(s)	389, 539
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 77, 190, 326, 395, 428
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	2 cut(s)	99, 377
Hsp92II	CATG	2 cut(s)	106, 229
HspAI	GCGC	1 cut(s)	99
KasI	GGCGCC	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	125, 130, 499, 520, 545
LguI	GCTCTTC	1 cut(s)	302
Lsp1109I	GCAGC	3 cut(s)	177, 478, 551
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	5 cut(s)	127, 132, 501, 522, 547
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	5 cut(s)	125, 130, 499, 520, 545
MboII	GAAGA	7 cut(s)	44, 232, 254, 296, 319, 405, 540
MflI	RGATCY	3 cut(s)	130, 499, 545
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	5 cut(s)	110, 161, 250, 263, 478
MmeI	TCCRAC	2 cut(s)	387, 527
Mox20I	TGGCCA	1 cut(s)	329
MreI	CGCCGGCG	1 cut(s)	67
MroNI	GCCGGC	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	1 cut(s)	553
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	5 cut(s)	68, 107, 350, 363, 476
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	6 cut(s)	50, 77, 190, 326, 395, 428
NaeI	GCCGGC	1 cut(s)	69
NarI	GGCGCC	1 cut(s)	99
NdeII	GATC	5 cut(s)	125, 130, 499, 520, 545
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	106, 229
NlaIV	GGNNCC	5 cut(s)	100, 132, 298, 501, 534
NmeAIII	GCCGAG	2 cut(s)	40, 535
NmuCI	GTSAC	1 cut(s)	373
NotI	GCGGCCGC	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	410, 441
PkrI	GCNGC	8 cut(s)	55, 58, 66, 192, 381, 421, 493, 541
PleI	GAGTC	5 cut(s)	110, 161, 250, 263, 478
PluTI	GGCGCC	1 cut(s)	102
PpsI	GAGTC	5 cut(s)	110, 161, 250, 263, 478
Psp1406I	AACGTT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	5 cut(s)	100, 132, 298, 501, 534
PsrI	GAACNNNNNNTAC	2 cut(s)	446, 478
PstI	CTGCAG	2 cut(s)	391, 541
PsuI	RGATCY	3 cut(s)	130, 499, 545
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	553
SatI	GCNGC	8 cut(s)	54, 57, 65, 191, 380, 420, 492, 540
Sau3AI	GATC	5 cut(s)	125, 130, 499, 520, 545
SchI	GAGTC	5 cut(s)	110, 161, 250, 263, 478
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	9 cut(s)	147, 186, 192, 234, 253, 302, 459, 534, 544
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	2 cut(s)	387, 537
SfoI	GGCGCC	1 cut(s)	100
SgrAI	CRCCGGYG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	5 cut(s)	53, 57, 65, 380, 419
SspDI	GGCGCC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	543
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	5 cut(s)	5, 122, 137, 180, 452
TasI	AATT	1 cut(s)	20
TauI	GCSGC	5 cut(s)	56, 59, 67, 382, 422
TfiI	GAWTC	2 cut(s)	410, 441
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TscAI	CASTG	2 cut(s)	18, 163
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	190, 491, 539
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	2 cut(s)	155, 242
TspGWI	ACGGA	2 cut(s)	123, 480
TspRI	CASTG	2 cut(s)	18, 163
XapI	RAATTY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.