Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008212

Physical Location & Seq

Genomic Coordinates Forward (+)

38829443 .. 38830269

Gene Structure 827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGATGAAAGGTGCTCATTTCCCTACAGCTGCTGCCTTTGCTCTATTGGCATTGGCAACCTTCCACCTTGTATCTGCCTCTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACACAAACTGTTGCTTCTGCCGTGTTTGTGAATGGAAAATTCTGCAGGGACCCAAAGCTTGCAACAGCAGATGATTTCTTCTTTTCCGGGCTCCGGATTCCTGGAAACACATCAAATCCGGTAGGTTCCAAAGTCACCCAAGCTAATGTGGAGCAAATAGCAGGGTTGAACACTCTTGGGATATCCCTGGCTCGCATAGACTTTGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTCGAGCCACGGAAGTCCTTATGGTCATGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCAACCCTGACAACCGCCTCTTCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAGTTCAACATCGGAAAGGTTCAAGCCGTAGCCATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATCACCATAGCCAATGCAGTGTTCGGCTCCAACCCTCCAATCAACCTTGATGTTCTCACCAAGGCCTTCCAAGTTGACAAAAATGTCGTTCAGTATCTCCAGAAACAGTTCTGGTATGACAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

233

Amino Acids

25.08

Weight (kDa)

7.81

Isoelectric Point (pI)

15.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	72 - 222	2.4e-54	Cupin
Cupin_2	PF07883	108 - 181	4.5e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22650 AT1G22650 AT1G72000
fragaria_vesca	FvH4_7g16940 FvH4_7g21580
malus_domestica	MD01G1084000.v1.1
prunus_persica	Prupe.2G191400_v2.0.a1 Prupe.2G191400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360191
rosa_laevigata	RLG00000027391 RLG00000027392 RLG00000027393 RLG00000027821
rosa_multiflora	Rmu_sc0004311.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296310
rosa_rugosa	Rorug01G0275800 Rorug01G0324500.1
rosa_samantha	Rh1AG289500 Rh1AG333700 Rh1BG255100 Rh1CG272500 Rh1DG284600
rosa_wichuraiana	Rw1G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	548
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	3 cut(s)	342, 442, 546
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	219, 341
AgsI	TTSAA	3 cut(s)	295, 514, 530
AjnI	CCWGG	3 cut(s)	226, 312, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	32, 184, 269
AluI	AGCT	3 cut(s)	32, 184, 269
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	369
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	3 cut(s)	32, 35, 555
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	4 cut(s)	253, 442, 568, 622
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	19, 22, 567
BceAI	ACGGC	2 cut(s)	131, 518
BciT130I	CCWGG	3 cut(s)	228, 314, 567
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	27, 169
BisI	GCNGC	4 cut(s)	33, 36, 546, 556
BlsI	GCNGC	4 cut(s)	34, 37, 547, 557
Bme1390I	CCNGG	4 cut(s)	214, 228, 314, 567
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	5 cut(s)	176, 177, 218, 253, 601
BmrFI	CCNGG	4 cut(s)	214, 228, 314, 567
BmrI	ACTGGG	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	312, 375, 633
BsaWI	WCCGGW	2 cut(s)	219, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 341
Bse1I	ACTGG	2 cut(s)	488, 508
Bse3DI	GCAATG	1 cut(s)	540
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	3 cut(s)	228, 314, 567
BseDI	CCNNGG	3 cut(s)	312, 375, 633
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	219, 341
BseMI	GCAATG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	488, 508
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	19, 22, 567
BshFI	GGCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	3 cut(s)	213, 220, 245
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	219, 341
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	638
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	2 cut(s)	19, 219
Bsp13I	TCCGGA	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	462
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	3 cut(s)	342, 442, 546
BspANI	GGCC	1 cut(s)	638
BspEI	TCCGGA	1 cut(s)	219
BspLI	GGNNCC	5 cut(s)	176, 177, 218, 253, 601
BspMAI	CTGCAG	1 cut(s)	173
BspPI	GGATC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	540
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	488, 508
BssECI	CCNNGG	3 cut(s)	312, 375, 633
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	633
Bst2UI	CCWGG	3 cut(s)	228, 314, 567
Bst4CI	ACNGT	2 cut(s)	136, 681
Bst6I	CTCTTC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	186, 319
BstDEI	CTNAG	1 cut(s)	551
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	425
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 50, 545
BstNI	CCWGG	3 cut(s)	228, 314, 567
BstSCI	CCNGG	4 cut(s)	212, 226, 312, 565
BstSFI	CTRYAG	2 cut(s)	27, 169
BstV1I	GCAGC	3 cut(s)	19, 22, 567
BstV2I	GAAGAC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	425
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	186, 319
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	1 cut(s)	394
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	226, 312, 565
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	633
FaeI	CATG	1 cut(s)	397
FaiI	YATR	5 cut(s)	323, 389, 395, 581, 690
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	33, 36, 546, 556
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	33, 36, 546, 556
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	4 cut(s)	33, 36, 546, 556
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	3 cut(s)	213, 220, 245
Hin1II	CATG	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	223, 562
HpaII	CCGG	3 cut(s)	213, 220, 245
HphI	GGTGA	4 cut(s)	253, 442, 568, 622
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	2 cut(s)	85, 521
Hpy188III	TCNNGA	2 cut(s)	220, 673
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	3 cut(s)	73, 392, 649
HpyCH4III	ACNGT	2 cut(s)	136, 681
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	4 cut(s)	171, 188, 332, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 50, 545
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	397
KflI	GGGWCCC	1 cut(s)	175
Kpn2I	TCCGGA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	3 cut(s)	222, 277, 605
Lsp1109I	GCAGC	3 cut(s)	19, 22, 567
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	259, 421
MalI	GATC	1 cut(s)	87
MbiI	CCGCTC	1 cut(s)	548
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	196, 439, 475
MhlI	GDGCHC	2 cut(s)	19, 219
MluCI	AATT	2 cut(s)	164, 697
MmeI	TCCRAC	2 cut(s)	453, 627
MnlI	CCTC	7 cut(s)	91, 105, 363, 366, 378, 455, 618
MroI	TCCGGA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	2 cut(s)	120, 700
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	3 cut(s)	213, 220, 245
MspR9I	CCNGG	4 cut(s)	214, 228, 314, 567
MvaI	CCWGG	3 cut(s)	228, 314, 567
MwoI	GCNNNNNNNGC	3 cut(s)	41, 50, 545
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	5 cut(s)	176, 177, 218, 253, 601
NmuCI	GTSAC	2 cut(s)	259, 421
OliI	CACNNNNGTG	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	2 cut(s)	223, 562
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	34, 37, 547, 557
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	3 cut(s)	226, 312, 565
PspGI	CCWGG	3 cut(s)	226, 312, 565
PspN4I	GGNNCC	5 cut(s)	176, 177, 218, 253, 601
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	120, 700
SatI	GCNGC	4 cut(s)	33, 36, 546, 556
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	4 cut(s)	214, 228, 314, 567
SduI	GDGCHC	2 cut(s)	19, 219
SfcI	CTRYAG	2 cut(s)	27, 169
Sfr274I	CTCGAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	164, 697
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	3 cut(s)	342, 442, 546
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	4 cut(s)	212, 226, 312, 565
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	2 cut(s)	136, 681
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	370
TasI	AATT	2 cut(s)	164, 697
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	223, 562
Tru1I	TTAA	2 cut(s)	120, 700
Tru9I	TTAA	2 cut(s)	120, 700
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	259, 421
TseI	GCWGC	3 cut(s)	32, 35, 555
Tsp45I	GTSAC	2 cut(s)	259, 421
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.