Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008212

Physical Location & Seq

Genomic Coordinates Forward (+)

56825152 .. 56831192

Gene Structure 6041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG333700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGCATAAATGGTGATACAACTGAGATCCCAGCAGTTTTCCACTTTGAATTGAGGGGTGCAATGCAGCTGTCGAAGCCAAACTGTGAAGGGACGAAAGTTCTTGAGAGGATAGCACTGTTTTGGCCCTTGACTTCCAAGACTGGGTGGTCTCTTATTGCACAGAGGGCAATAGAGCTGGCTGCTCAAGCTTCTGGTGGTATCTTGTTGGCTGCATCTACTCCAGCGCCGCAAGAGGAAAGATATACAGGTGGAGCTGATGGTCCGTCAGCAGCCAAACTCAAGAGGGAGGCCTCTGATAAAGCATCTCGCGTTAACCGCAGGCGTATTGAGGAGGAGGATTTAGAACACATATTGGACGCAATCCTCGTGAATTTACATGGAGGAATTGGTATGGAGGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.61

Weight (kDa)

5.62

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22650 AT1G22650 AT1G72000
fragaria_vesca	FvH4_7g16940 FvH4_7g21580
malus_domestica	MD01G1084000.v1.1
prunus_persica	Prupe.2G191400_v2.0.a1 Prupe.2G191400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360191
rosa_laevigata	RLG00000027391 RLG00000027392 RLG00000027393 RLG00000027821
rosa_multiflora	Rmu_sc0004311.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296310
rosa_rugosa	Rorug01G0275800 Rorug01G0324500.1
rosa_samantha	Rh1AG289500 Rh1AG333700 Rh1BG255100 Rh1CG272500 Rh1DG284600
rosa_wichuraiana	Rw1G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AccII	CGCG	1 cut(s)	312
AciI	CCGC	2 cut(s)	230, 319
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	4 cut(s)	70, 178, 191, 257
AluI	AGCT	4 cut(s)	70, 178, 191, 257
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	125, 291
ApeKI	GCWGC	4 cut(s)	67, 182, 212, 272
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	126, 263
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	368
BbvI	GCAGC	4 cut(s)	79, 169, 199, 284
BccI	CCATC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	230
BisI	GCNGC	5 cut(s)	68, 183, 213, 230, 273
BlsI	GCNGC	5 cut(s)	69, 184, 214, 231, 274
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	126, 263
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	224, 314
BmuI	ACTGGG	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	125, 171, 266
BsaI	GGTCTC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	347, 350
BseXI	GCAGC	4 cut(s)	79, 169, 199, 284
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	127, 293
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	127, 293
Bso31I	GGTCTC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	230, 319
BspANI	GGCC	2 cut(s)	127, 293
BspCNI	CTCAG	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	312
BspPI	GGATC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	86, 120
BstC8I	GCNNGC	2 cut(s)	180, 323
BstDEI	CTNAG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 167, 188, 318
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	79, 169, 199, 284
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	127, 293
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	180, 323
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	126, 263
CseI	GACGC	1 cut(s)	368
CviAII	CATG	1 cut(s)	380
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	263
FaeI	CATG	1 cut(s)	383
FaiI	YATR	5 cut(s)	8, 246, 353, 381, 395
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	379
Fnu4HI	GCNGC	5 cut(s)	68, 183, 213, 230, 273
Fsp4HI	GCNGC	5 cut(s)	68, 183, 213, 230, 273
FspBI	CTAG	1 cut(s)	406
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	5 cut(s)	68, 183, 213, 230, 273
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	127, 293
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	189
HpaI	GTTAAC	1 cut(s)	316
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	316, 403
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	3 cut(s)	104, 283, 370
Hpy8I	GTNNAC	2 cut(s)	316, 403
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	86, 120
HpyCH4V	TGCA	4 cut(s)	62, 67, 161, 215
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 167, 188, 318
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	1 cut(s)	227
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	7 cut(s)	45, 129, 164, 180, 234, 237, 307
Lsp1109I	GCAGC	4 cut(s)	79, 169, 199, 284
LweI	GCATC	2 cut(s)	224, 314
MaeI	CTAG	1 cut(s)	406
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	3 cut(s)	50, 373, 387
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	76, 167, 188, 318
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	383
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	69, 184, 214, 231, 274
PspFI	CCCAGC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	126, 263
PsuI	RGATCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	5 cut(s)	68, 183, 213, 230, 273
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	2 cut(s)	126, 263
SetI	ASST	6 cut(s)	72, 180, 193, 253, 259, 402
SfaNI	GCATC	2 cut(s)	224, 314
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	3 cut(s)	104, 186, 281
SmoI	CTYRAG	3 cut(s)	104, 186, 281
Sse9I	AATT	3 cut(s)	50, 373, 387
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	230, 319
SspMI	CTAG	1 cut(s)	406
StuI	AGGCCT	1 cut(s)	293
TaaI	ACNGT	2 cut(s)	86, 120
TaqI	TCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	50, 373, 387
TauI	GCSGC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	4 cut(s)	67, 182, 212, 272
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.