RLG00000029717
NAC Family

inactive poly ADP-ribose polymerase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
47457808 .. 47463417
5610 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029717

Sequence Viewer

Length: 1746 bp
ATGGAAGCAAAGATCGCAAAGGCATTGGATAGTCGTCGACCAGTTATGCTCGGTGTAAAGAGAAAGCGGCCAACTCGATATGCTGCATATCGAGGCTTACCAAAGAAGCCGACCTTGAGTAAGCTCCGAAAGCGAAGGAAATTGTATGGATGCGGAACCAAACTCATGAGTTTTGAATCTCATGTTAGACGATCTTTACTTTCATCCTATTCAAATTTTACAAGAACTGGTGTGCCACAGCGTCTGATGTTTTACCAGAATGGCGAATGGAACAATTATCCTCAGGTTCTGGTTGACTTGGTTAGGAAAGATCTTCAGATAAAGAAAGCAGCTATCAAGATTGAGTCAAATGGTGATCATTTACTGCTAGATTTTTTGCATATGTTCCAGTTGAACTTGAGAACAGGTGTACAACACCCTATTGCTTGGATTGACGAAGCTGGTAATTGCTTCTTTCCGGAAATTTACAGCGACGATGAAGATGAGCCAAATGGCAACTGGCGGCATGGAGATTGCAACGATCAGGATCCCTTAGTTGACGAGTGTTGTGGGTCTTGTGAGATTAAACTGCATCTGGAAATTGAAATTGATGGAATGGATCAACCTGAGTTGAAGGAATCTAGTGGGGAGTCAAATGGTTTAGTAAAGAAAATTCAGATTGATCAAATACCTGCCAGTAGTGGTTATGTGATGGAAGTTGAGAACAGTTGCAATGGAGGAGGTGGTCCACAAGTTGATGAAGATGTTGAGGATAATCAGCAGATGAGAAAGAATTTAGCTAGAGCAACTGAAACTCTAAATAGAAAGCTGGACTGTGATACTGTTCGTAATATATTTTTTAAAGGAATGAACACTTGTGATGCTGCTGAGCTTGTTGATATATACCAATGCTCAAGTAATCTGATGCAAGCTCGACTGGAGCTTTTCGAGAAACAGGTTGAAATTACTAAAACATTCCGCGGAGACGCAAATGTACGATATGCTTGGCTTGCTTCTTCAAAAGGAGAACTTTCGACTATATTAATGTATGGGCTTGGTCATTGTGGACTAGCAGCAATTAAGTCCATTTATGGCACTGGCGTCCATCTCACAGCGGCTAGCTTCTCCAACACCTGTGCAAGTTATTGTGATGTTGATGAAAATGGAGTACGGCACATGTTATTCTGTCGTGTCATAATGGGAAATATGGAGTTACTTCACCCTGAAAGTAAACAGTTTCATCCCTGCAGTCAAGATTATGATAGTGGAGTGGATGATCTTCAGGATCCAAAAAATTACATTGTCTGGAATGTGAACATCAATACACACATATATCCAGAATTTGTTGTTAGTTTCAAGCTCTCATCCAATACTGAAGGAAATCCAATTGGAAGTGAGAAAAAGCATGGAGTTTCAGGGGTTACGACATACGTCCAGGGACCCAAGGGCTTTTTGCAATTACAGTCACCTGCAATTGATAAAGCTACTACTGGTTCTACCACTCAAAGGACCCCTAAATCACCTTGGATGCCTTTCCCTATGTTATTTGCTGCTATTGCAAGTAAAATTCCTCCCAAGAATATGGAACAAGTTAATGTTCATTATGACTTTTTCAGGGCAAAGAAGATAACCCGTGAAGAATTTGTAGAGAAGCTGAGGTTGACTGTTGGAGATAGTTTATTGAGGTCTACAATAACGGAACTTCAATGCAAGATACCCTTTAAATCTAAGAGTGAATTGGGAGTGCCAAGGACAGCCCGCCACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

582

Amino Acids

65.54

Weight (kDa)

7.82

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WWE_5 PF23467 73 - 152 6.7e-35 WWE domain
RST PF12174 498 - 562 1.6e-26 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1456
Acc36I ACCTGC 2 cut(s) 679, 1456
AccI GTMKAC 2 cut(s) 37, 1667
AccII CGCG 1 cut(s) 960
AccIII TCCGGA 1 cut(s) 457
AciI CCGC 7 cut(s) 67, 153, 502, 958, 960, 1094, 1738
AclWI GGATC 5 cut(s) 521, 534, 606, 1259, 1272
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 7 cut(s) 214, 462, 651, 772, 1319, 1545, 1619
AcuI CTGAAG 3 cut(s) 299, 1244, 1374
AcyI GRCGYC 1 cut(s) 1080
AfaI GTAC 3 cut(s) 411, 975, 1149
AfiI CCNNNNNNNGG 1 cut(s) 1485
AflIII ACRYGT 1 cut(s) 1155
AgsI TTSAA 9 cut(s) 176, 213, 394, 584, 613, 941, 999, 1336, 1685
AjnI CCWGG 1 cut(s) 1413
Alw26I GTCTC 1 cut(s) 957
AlwI GGATC 5 cut(s) 521, 534, 606, 1259, 1272
AlwNI CAGNNNCTG 2 cut(s) 244, 289
Aor13HI TCCGGA 1 cut(s) 457
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 5 cut(s) 83, 329, 863, 1052, 1529
ApoI RAATTY 7 cut(s) 214, 462, 651, 772, 1319, 1545, 1619
AseI ATTAAT 1 cut(s) 1022
AspS9I GGNCC 3 cut(s) 725, 1418, 1488
AsuHPI GGTGA 4 cut(s) 365, 1190, 1437, 1491
AsuNHI GCTAGC 1 cut(s) 1097
AvaII GGWCC 3 cut(s) 725, 1418, 1488
AxyI CCTNAGG 1 cut(s) 282
BamHI GGATCC 2 cut(s) 526, 1264
BbvCI CCTCAGC 1 cut(s) 1634
BbvI GCAGC 5 cut(s) 70, 341, 850, 1064, 1516
BccI CCATC 3 cut(s) 584, 685, 1092
BceAI ACGGC 1 cut(s) 1166
BciT130I CCWGG 1 cut(s) 1415
BclI TGATCA 2 cut(s) 355, 661
BcoDI GTCTC 1 cut(s) 957
BfaI CTAG 5 cut(s) 368, 621, 780, 1049, 1098
BfmI CTRYAG 1 cut(s) 1225
BfuAI ACCTGC 2 cut(s) 679, 1456
BglII AGATCT 1 cut(s) 310
BisI GCNGC 8 cut(s) 68, 84, 330, 503, 864, 1053, 1095, 1530
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 8 cut(s) 69, 85, 331, 504, 865, 1054, 1096, 1531
Bme1390I CCNGG 1 cut(s) 1415
Bme18I GGWCC 3 cut(s) 725, 1418, 1488
BmgT120I GGNCC 3 cut(s) 725, 1418, 1488
BmiI GGNNCC 6 cut(s) 157, 528, 1266, 1419, 1420, 1490
BmrFI CCNGG 1 cut(s) 1415
BmsI GCATC 5 cut(s) 140, 580, 850, 894, 1497
BmtI GCTAGC 1 cut(s) 1101
BoxI GACNNNNGTC 1 cut(s) 1409
BpmI CTGGAG 1 cut(s) 938
Bpu10I CCTNAGC 1 cut(s) 1634
Bpu1102I GCTNAGC 1 cut(s) 867
BpuEI CTTGAG 3 cut(s) 136, 418, 877
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 1080
BsaJI CCNNGG 5 cut(s) 958, 1414, 1422, 1502, 1727
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 1485
Bse1I ACTGG 8 cut(s) 41, 232, 388, 503, 675, 921, 1081, 1474
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 718
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 457
BseBI CCWGG 1 cut(s) 1415
BseDI CCNNGG 5 cut(s) 958, 1414, 1422, 1502, 1727
BseGI GGATG 6 cut(s) 155, 203, 1219, 1258, 1343, 1512
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 1485
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 4 cut(s) 296, 597, 858, 1625
BseNI ACTGG 8 cut(s) 41, 232, 388, 503, 675, 921, 1081, 1474
BseRI GAGGAG 1 cut(s) 732
BseXI GCAGC 5 cut(s) 70, 341, 850, 1064, 1516
Bsh1236I CGCG 1 cut(s) 960
BshFI GGCC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 1 cut(s) 1431
BslI CCNNNNNNNGG 1 cut(s) 1485
BsmAI GTCTC 1 cut(s) 957
BsmBI CGTCTC 1 cut(s) 957
BsmFI GGGAC 1 cut(s) 1431
BsnI GGCC 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 409
Bsp1720I GCTNAGC 1 cut(s) 867
BspACI CCGC 7 cut(s) 67, 153, 502, 958, 960, 1094, 1738
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 4 cut(s) 295, 598, 859, 1626
BspEI TCCGGA 1 cut(s) 457
BspFNI CGCG 1 cut(s) 960
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 6 cut(s) 157, 528, 1266, 1419, 1420, 1490
BspMAI CTGCAG 1 cut(s) 1229
BspMI ACCTGC 2 cut(s) 679, 1456
BspOI GCTAGC 1 cut(s) 1101
BspPI GGATC 5 cut(s) 521, 534, 606, 1259, 1272
BsrDI GCAATG 1 cut(s) 718
BsrGI TGTACA 1 cut(s) 409
BsrI ACTGG 8 cut(s) 41, 232, 388, 503, 675, 921, 1081, 1474
BssECI CCNNGG 5 cut(s) 958, 1414, 1422, 1502, 1727
BssNI GRCGYC 1 cut(s) 1080
BssT1I CCWWGG 3 cut(s) 1422, 1502, 1727
Bst2UI CCWGG 1 cut(s) 1415
Bst4CI ACNGT 6 cut(s) 707, 815, 823, 1215, 1443, 1645
BstACI GRCGYC 1 cut(s) 1080
BstAUI TGTACA 1 cut(s) 409
BstC8I GCNNGC 4 cut(s) 909, 990, 1099, 1738
BstDEI CTNAG 6 cut(s) 282, 532, 606, 867, 1634, 1707
BstDSI CCRYGG 1 cut(s) 958
BstF5I GGATG 6 cut(s) 155, 203, 1219, 1258, 1343, 1512
BstFNI CGCG 1 cut(s) 960
BstMAI GTCTC 1 cut(s) 957
BstMWI GCNNNNNNNGC 4 cut(s) 14, 130, 989, 1535
BstNI CCWGG 1 cut(s) 1415
BstNSI RCATGY 1 cut(s) 1159
BstPAI GACNNNNGTC 1 cut(s) 1409
BstSCI CCNGG 1 cut(s) 1413
BstSFI CTRYAG 1 cut(s) 1225
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 5 cut(s) 70, 341, 850, 1064, 1516
BstX2I RGATCY 3 cut(s) 310, 526, 1264
BstXI CCANNNNNNTGG 1 cut(s) 1561
BstYI RGATCY 3 cut(s) 310, 526, 1264
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 958
BtsCI GGATG 6 cut(s) 155, 203, 1219, 1258, 1343, 1512
BtsIMutI CAGTG 2 cut(s) 1074, 1741
BveI ACCTGC 2 cut(s) 679, 1456
Cac8I GCNNGC 4 cut(s) 909, 990, 1099, 1738
CaiI CAGNNNCTG 2 cut(s) 244, 289
CciI TCATGA 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 725, 1418, 1488
Cfr42I CCGCGG 1 cut(s) 961
CseI GACGC 3 cut(s) 230, 974, 1069
Csp6I GTAC 3 cut(s) 410, 974, 1148
CviAII CATG 5 cut(s) 166, 182, 506, 1156, 1385
CviQI GTAC 3 cut(s) 410, 974, 1148
DdeI CTNAG 6 cut(s) 282, 532, 606, 867, 1634, 1707
DraI TTTAAA 2 cut(s) 841, 1702
EaeI YGGCCR 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 1422, 1502, 1727
Eco47I GGWCC 3 cut(s) 725, 1418, 1488
Eco57I CTGAAG 3 cut(s) 299, 1244, 1374
Eco81I CCTNAGG 1 cut(s) 282
EcoO109I RGGNCCY 2 cut(s) 1418, 1488
EcoRII CCWGG 1 cut(s) 1413
EcoT14I CCWWGG 3 cut(s) 1422, 1502, 1727
ErhI CCWWGG 3 cut(s) 1422, 1502, 1727
Esp3I CGTCTC 1 cut(s) 957
FaeI CATG 5 cut(s) 169, 185, 509, 1159, 1388
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 993, 1025, 1682, 1714
FaqI GGGAC 1 cut(s) 1431
FatI CATG 5 cut(s) 165, 181, 505, 1155, 1384
FauNDI CATATG 1 cut(s) 381
FbaI TGATCA 2 cut(s) 355, 661
FblI GTMKAC 2 cut(s) 37, 1667
Fnu4HI GCNGC 8 cut(s) 68, 84, 330, 503, 864, 1053, 1095, 1530
FokI GGATG 6 cut(s) 162, 190, 1206, 1265, 1330, 1519
Fsp4HI GCNGC 8 cut(s) 68, 84, 330, 503, 864, 1053, 1095, 1530
FspBI CTAG 5 cut(s) 368, 621, 780, 1049, 1098
GluI GCNGC 8 cut(s) 68, 84, 330, 503, 864, 1053, 1095, 1530
GsuI CTGGAG 1 cut(s) 938
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 458
HgaI GACGC 3 cut(s) 230, 974, 1069
Hin1I GRCGYC 1 cut(s) 1080
Hin1II CATG 5 cut(s) 169, 185, 509, 1159, 1388
HincII GTYRAC 4 cut(s) 38, 295, 538, 1641
HindII GTYRAC 4 cut(s) 38, 295, 538, 1641
HinfI GANTC 4 cut(s) 176, 344, 617, 629
HpaII CCGG 1 cut(s) 458
HphI GGTGA 4 cut(s) 365, 1190, 1437, 1491
Hpy188I TCNGA 5 cut(s) 128, 246, 318, 657, 903
Hpy99I CGWCG 2 cut(s) 39, 476
HpyAV CCTTC 3 cut(s) 129, 607, 1349
HpyCH4III ACNGT 6 cut(s) 707, 815, 823, 1215, 1443, 1645
HpyCH4IV ACGT 1 cut(s) 1410
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 130, 989, 1535
HpyF3I CTNAG 6 cut(s) 282, 532, 606, 867, 1634, 1707
HpySE526I ACGT 1 cut(s) 1410
Hsp92I GRCGYC 1 cut(s) 1080
Hsp92II CATG 5 cut(s) 169, 185, 509, 1159, 1388
KflI GGGWCCC 1 cut(s) 1418
Kpn2I TCCGGA 1 cut(s) 457
Ksp22I TGATCA 2 cut(s) 355, 661
KspI CCGCGG 1 cut(s) 961
LmnI GCTCC 2 cut(s) 129, 919
Lsp1109I GCAGC 5 cut(s) 70, 341, 850, 1064, 1516
LweI GCATC 5 cut(s) 140, 580, 850, 894, 1497
MaeI CTAG 5 cut(s) 368, 621, 780, 1049, 1098
MaeII ACGT 1 cut(s) 1410
MaeIII GTNAC 3 cut(s) 1191, 1399, 1443
MboII GAAGA 7 cut(s) 305, 491, 752, 987, 1250, 1615, 1628
MfeI CAATTG 2 cut(s) 1365, 1452
MflI RGATCY 3 cut(s) 310, 526, 1264
MlyI GAGTC 2 cut(s) 353, 638
MmeI TCCRAC 2 cut(s) 1131, 1627
MnlI CCTC 8 cut(s) 86, 291, 710, 713, 742, 1560, 1629, 1656
MroI TCCGGA 1 cut(s) 457
MseI TTAA 6 cut(s) 564, 840, 1022, 1059, 1572, 1701
MspA1I CMGCKG 2 cut(s) 960, 1094
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 1415
MunI CAATTG 2 cut(s) 1365, 1452
MvaI CCWGG 1 cut(s) 1415
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 4 cut(s) 14, 130, 989, 1535
NdeI CATATG 1 cut(s) 381
NheI GCTAGC 1 cut(s) 1097
NlaIII CATG 5 cut(s) 169, 185, 509, 1159, 1388
NlaIV GGNNCC 6 cut(s) 157, 528, 1266, 1419, 1420, 1490
NmuCI GTSAC 1 cut(s) 1443
NspI RCATGY 1 cut(s) 1159
PagI TCATGA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 1456
PciI ACATGT 1 cut(s) 1155
PfeI GAWTC 2 cut(s) 176, 617
PkrI GCNGC 8 cut(s) 69, 85, 331, 504, 865, 1054, 1096, 1531
PleI GAGTC 2 cut(s) 352, 637
PpsI GAGTC 2 cut(s) 352, 637
PpuMI RGGWCCY 2 cut(s) 1418, 1488
PscI ACATGT 1 cut(s) 1155
PshAI GACNNNNGTC 1 cut(s) 1409
PshBI ATTAAT 1 cut(s) 1022
Psp5II RGGWCCY 2 cut(s) 1418, 1488
Psp6I CCWGG 1 cut(s) 1413
PspGI CCWGG 1 cut(s) 1413
PspN4I GGNNCC 6 cut(s) 157, 528, 1266, 1419, 1420, 1490
PspPI GGNCC 3 cut(s) 725, 1418, 1488
PspPPI RGGWCCY 2 cut(s) 1418, 1488
PstI CTGCAG 1 cut(s) 1229
PstNI CAGNNNCTG 2 cut(s) 244, 289
PsuI RGATCY 3 cut(s) 310, 526, 1264
RsaI GTAC 3 cut(s) 411, 975, 1149
RsaNI GTAC 3 cut(s) 410, 974, 1148
SacII CCGCGG 1 cut(s) 961
SalI GTCGAC 1 cut(s) 36
SaqAI TTAA 6 cut(s) 564, 840, 1022, 1059, 1572, 1701
SatI GCNGC 8 cut(s) 68, 84, 330, 503, 864, 1053, 1095, 1530
Sau96I GGNCC 3 cut(s) 725, 1418, 1488
SchI GAGTC 2 cut(s) 353, 638
ScrFI CCNGG 1 cut(s) 1415
SfaNI GCATC 5 cut(s) 140, 580, 850, 894, 1497
SfcI CTRYAG 1 cut(s) 1225
Sfr303I CCGCGG 1 cut(s) 961
SgrBI CCGCGG 1 cut(s) 961
SinI GGWCC 3 cut(s) 725, 1418, 1488
SmlI CTYRAG 3 cut(s) 115, 397, 892
SmoI CTYRAG 3 cut(s) 115, 397, 892
SsiI CCGC 7 cut(s) 67, 153, 502, 958, 960, 1094, 1738
SspMI CTAG 5 cut(s) 368, 621, 780, 1049, 1098
StyD4I CCNGG 1 cut(s) 1413
StyI CCWWGG 3 cut(s) 1422, 1502, 1727
TaaI ACNGT 6 cut(s) 707, 815, 823, 1215, 1443, 1645
TaiI ACGT 1 cut(s) 1413
TaqI TCGA 6 cut(s) 37, 76, 91, 913, 927, 1013
TatI WGTACW 1 cut(s) 409
TauI GCSGC 3 cut(s) 70, 505, 1097
TfiI GAWTC 2 cut(s) 176, 617
Tru1I TTAA 6 cut(s) 564, 840, 1022, 1059, 1572, 1701
Tru9I TTAA 6 cut(s) 564, 840, 1022, 1059, 1572, 1701
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 1 cut(s) 1443
TseI GCWGC 5 cut(s) 83, 329, 863, 1052, 1529
Tsp45I GTSAC 1 cut(s) 1443
TspDTI ATGAA 7 cut(s) 192, 492, 753, 863, 1152, 1208, 1568
TspGWI ACGGA 1 cut(s) 1691
TspRI CASTG 1 cut(s) 1081
VpaK11BI GGWCC 3 cut(s) 725, 1418, 1488
VspI ATTAAT 1 cut(s) 1022
XapI RAATTY 7 cut(s) 214, 462, 651, 772, 1319, 1545, 1619
XceI RCATGY 1 cut(s) 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
XmiI GTMKAC 2 cut(s) 37, 1667
XspI CTAG 5 cut(s) 368, 621, 780, 1049, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.