Rmu_ssc0000089.1_g000021
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000089.1
OG0002330
Physical Location & Seq
Reverse (-)
164312 .. 169940
5629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000089.1_g000021.1.cds

Sequence Viewer

Length: 1821 bp
atggaagcaaagatcgcaaaggcattggatagtggtcgaccctgtgtaaagagaaagcgggcaaagaagccgaccttgagtaagcatcgaggcttaccaaagaagccgaccttgagtaagctccgaaagcgaaggaaattgtatggatgcggaaccaaactcatgaggtttgaatctcatgttagacgacctttgctttcatcctattcaaattttacaagaactggtgtgccacagcgtctgatgttttaccagaatggcgaatggaacaattatcctcaggttctggttgatttggttaggaaagatcttcagataaagaaagcagctatcaagattgagtcaaatggtgatcatttactgcttgattttttgcatatgttccagttgaacttgagaacaggtgtacaacaccctattgcttggattgacgaagctggtagttgcttctttccggaattttacagcgacgatgaagatgagccaaatggcaactggcggcatggagattgcaacgatcaggatcccttagttgacgagtgttgtgggtcttgtgagattaaactgcatctggaaattgaaatagatggaatggatcaacctgagttgaaggaatctagtggggagtcaaatggtttagtaaagaaaattcagattgatcaaatacctgccagtagtggttatgtgatggaagttgagaacagttgcaatggaggaggtggtccacaagttgatgaagatattgaggataatcagcagatgagaaagaacttagctagagcaactgaaactctaaatagaaagctggactgtgatactgttcgtaatatattttttaaaggaatgaacacttgtgatgctgctgagcttgttgatatataccgatgctcaagtaatctgatgcaagctcgactggaacttttcgagaaacaggttgaaattactaaaacatttcgtggagacgcaaatgtacgatatgcttggcttgcttcttcaaaaggagaactttcgactatattaatgtatgggcttggtcattgtggactggcagcaattaagcccatttatggtactggtgtccatctcacagcggctagcttctccaacacctgtgcaagttattgtgacgttgatgaaaatggagtacggcacatgatattctgtcgtgtcataatgggaaatatggagttacttcaccctgaaagtaaacagtttcatccctgcagtcaagattatgatagtggagtggatgatcttcaggatccaaaaaattacattgtctggaatatgaacatcaatacacacatatatccagaatttgttgttagtttcaagctctcatccaatactgaaggacatccaattggaagtgagaaaaagcatggagtttcaggggttacgacatacgtccagggacgctttttgcaattacagtcacctgcaattgataaagggagtaagattcattcaaattcagattgtgggagaatgtatgaaagcgatggtcaactgatctcaatgtctggatgtttccaggctactactggttctaccactcaaaggacccctaaatcaccttggatgcctttccctatgttatttgctgctattgcaagtaaaattcctcccaaggatatggaacaagttaatgttcattatgactttttcagggcaaagaagataacccgtgaggaatttgtagagaagctgaggttgactgttggagatagtttattgaggtctacaataacagaacttcaatgcaagataccctttaaatctaagagtgaattgggagtgccaaggtcagcccgccactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000160 GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0001505 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006807 GO:0006809 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009867 GO:0009873 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010154 GO:0010193 GO:0010228 GO:0012501 GO:0017144 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0032501 GO:0032502 GO:0032870 GO:0034641 GO:0035556 GO:0042133 GO:0042136 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045087 GO:0046209 GO:0046677 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0072593 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903409 GO:1905392 GO:2000377 GO:2001057
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

606

Amino Acids

68.38

Weight (kDa)

7.99

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1447
Acc36I ACCTGC 2 cut(s) 676, 1447
AccI GTMKAC 2 cut(s) 37, 1742
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 5 cut(s) 58, 150, 499, 1091, 1813
AclWI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
AcsI RAATTY 7 cut(s) 211, 458, 648, 1316, 1471, 1620, 1694
AcuI CTGAAG 3 cut(s) 296, 1241, 1371
AfaI GTAC 4 cut(s) 408, 972, 1072, 1146
AfiI CCNNNNNNNGG 2 cut(s) 1067, 1560
AjnI CCWGG 2 cut(s) 1410, 1533
Alw26I GTCTC 1 cut(s) 954
AlwI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
AlwNI CAGNNNCTG 2 cut(s) 241, 286
Aor13HI TCCGGA 1 cut(s) 454
ApeKI GCWGC 4 cut(s) 326, 860, 1049, 1604
ApoI RAATTY 7 cut(s) 211, 458, 648, 1316, 1471, 1620, 1694
AseI ATTAAT 1 cut(s) 1019
AspS9I GGNCC 2 cut(s) 722, 1563
AsuHPI GGTGA 4 cut(s) 362, 1187, 1428, 1566
AsuNHI GCTAGC 1 cut(s) 1094
AvaII GGWCC 2 cut(s) 722, 1563
AxyI CCTNAGG 1 cut(s) 279
BaeI ACNNNNGTAYC 2 cut(s) 1062, 1095
BamHI GGATCC 2 cut(s) 523, 1261
BbvCI CCTCAGC 1 cut(s) 1709
BbvI GCAGC 4 cut(s) 338, 847, 1061, 1591
BccI CCATC 4 cut(s) 581, 682, 1089, 1496
BceAI ACGGC 1 cut(s) 1163
BciT130I CCWGG 2 cut(s) 1412, 1535
BclI TGATCA 2 cut(s) 352, 658
BcoDI GTCTC 1 cut(s) 954
BfaI CTAG 3 cut(s) 618, 777, 1095
BfmI CTRYAG 1 cut(s) 1222
BfuAI ACCTGC 2 cut(s) 676, 1447
BglII AGATCT 1 cut(s) 307
BisI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1605
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 6 cut(s) 328, 501, 862, 1051, 1093, 1606
Bme1390I CCNGG 2 cut(s) 1412, 1535
Bme18I GGWCC 2 cut(s) 722, 1563
BmgT120I GGNCC 2 cut(s) 722, 1563
BmiI GGNNCC 4 cut(s) 154, 525, 1263, 1565
BmrFI CCNGG 2 cut(s) 1412, 1535
BmsI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1572
BmtI GCTAGC 1 cut(s) 1098
BoxI GACNNNNGTC 1 cut(s) 1406
Bpu10I CCTNAGC 1 cut(s) 1709
Bpu1102I GCTNAGC 1 cut(s) 864
BpuEI CTTGAG 4 cut(s) 97, 133, 415, 874
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 4 cut(s) 1411, 1577, 1629, 1802
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 2 cut(s) 1067, 1560
Bse1I ACTGG 8 cut(s) 229, 385, 500, 672, 918, 1050, 1078, 1549
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 715
Bse8I GATNNNNATC 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 2 cut(s) 1412, 1535
BseDI CCNNGG 4 cut(s) 1411, 1577, 1629, 1802
BseGI GGATG 8 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1532, 1587
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 1067, 1560
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 4 cut(s) 293, 594, 855, 1700
BseNI ACTGG 8 cut(s) 229, 385, 500, 672, 918, 1050, 1078, 1549
BseRI GAGGAG 1 cut(s) 729
BseXI GCAGC 4 cut(s) 338, 847, 1061, 1591
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 1428
BslI CCNNNNNNNGG 2 cut(s) 1067, 1560
BsmAI GTCTC 1 cut(s) 954
BsmBI CGTCTC 1 cut(s) 954
BsmFI GGGAC 1 cut(s) 1428
Bsp13I TCCGGA 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 5 cut(s) 58, 150, 499, 1091, 1813
BspCNI CTCAG 4 cut(s) 292, 595, 856, 1701
BspEI TCCGGA 1 cut(s) 454
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 154, 525, 1263, 1565
BspMAI CTGCAG 1 cut(s) 1226
BspMI ACCTGC 2 cut(s) 676, 1447
BspOI GCTAGC 1 cut(s) 1098
BspPI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
BsrDI GCAATG 1 cut(s) 715
BsrGI TGTACA 1 cut(s) 406
BsrI ACTGG 8 cut(s) 229, 385, 500, 672, 918, 1050, 1078, 1549
BssECI CCNNGG 4 cut(s) 1411, 1577, 1629, 1802
BssT1I CCWWGG 3 cut(s) 1577, 1629, 1802
Bst2UI CCWGG 2 cut(s) 1412, 1535
Bst4CI ACNGT 6 cut(s) 704, 812, 820, 1212, 1434, 1720
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 5 cut(s) 60, 906, 987, 1096, 1813
BstDEI CTNAG 7 cut(s) 279, 529, 603, 772, 864, 1709, 1782
BstF5I GGATG 8 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1532, 1587
BstMAI GTCTC 1 cut(s) 954
BstMWI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1610
BstNI CCWGG 2 cut(s) 1412, 1535
BstPAI GACNNNNGTC 1 cut(s) 1406
BstSCI CCNGG 2 cut(s) 1410, 1533
BstSFI CTRYAG 1 cut(s) 1222
BstV1I GCAGC 4 cut(s) 338, 847, 1061, 1591
BstX2I RGATCY 3 cut(s) 307, 523, 1261
BstXI CCANNNNNNTGG 1 cut(s) 1636
BstYI RGATCY 3 cut(s) 307, 523, 1261
Bsu36I CCTNAGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 1515
BtsCI GGATG 8 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1532, 1587
BtsIMutI CAGTG 1 cut(s) 1816
BveI ACCTGC 2 cut(s) 676, 1447
Cac8I GCNNGC 5 cut(s) 60, 906, 987, 1096, 1813
CaiI CAGNNNCTG 2 cut(s) 241, 286
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 722, 1563
CseI GACGC 3 cut(s) 227, 971, 1425
Csp6I GTAC 4 cut(s) 407, 971, 1071, 1145
CviAII CATG 5 cut(s) 163, 179, 503, 1153, 1382
CviQI GTAC 4 cut(s) 407, 971, 1071, 1145
DdeI CTNAG 7 cut(s) 279, 529, 603, 772, 864, 1709, 1782
DraI TTTAAA 2 cut(s) 838, 1777
Eco130I CCWWGG 3 cut(s) 1577, 1629, 1802
Eco47I GGWCC 2 cut(s) 722, 1563
Eco57I CTGAAG 3 cut(s) 296, 1241, 1371
Eco81I CCTNAGG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 1563
EcoRII CCWGG 2 cut(s) 1410, 1533
EcoT14I CCWWGG 3 cut(s) 1577, 1629, 1802
ErhI CCWWGG 3 cut(s) 1577, 1629, 1802
Esp3I CGTCTC 1 cut(s) 954
FaeI CATG 5 cut(s) 166, 182, 506, 1156, 1385
FalI AAGNNNNNCTT 8 cut(s) 59, 91, 95, 127, 990, 1022, 1757, 1789
FaqI GGGAC 1 cut(s) 1428
FatI CATG 5 cut(s) 162, 178, 502, 1152, 1381
FauI CCCGC 1 cut(s) 51
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 2 cut(s) 352, 658
FblI GTMKAC 2 cut(s) 37, 1742
Fnu4HI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1605
FokI GGATG 8 cut(s) 159, 187, 1203, 1262, 1327, 1344, 1539, 1594
Fsp4HI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1605
FspBI CTAG 3 cut(s) 618, 777, 1095
GluI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1605
HapII CCGG 1 cut(s) 455
HgaI GACGC 3 cut(s) 227, 971, 1425
Hin1II CATG 5 cut(s) 166, 182, 506, 1156, 1385
HincII GTYRAC 4 cut(s) 38, 535, 1508, 1716
HindII GTYRAC 4 cut(s) 38, 535, 1508, 1716
HinfI GANTC 5 cut(s) 173, 341, 614, 626, 1462
HpaII CCGG 1 cut(s) 455
HphI GGTGA 4 cut(s) 362, 1187, 1428, 1566
Hpy166II GTNNAC 9 cut(s) 38, 407, 535, 725, 1043, 1208, 1508, 1716, 1743
Hpy188I TCNGA 6 cut(s) 125, 243, 315, 654, 900, 1477
Hpy8I GTNNAC 9 cut(s) 38, 407, 535, 725, 1043, 1208, 1508, 1716, 1743
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 126, 604, 1346
HpyCH4III ACNGT 6 cut(s) 704, 812, 820, 1212, 1434, 1720
HpyCH4IV ACGT 2 cut(s) 1128, 1407
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1610
HpyF3I CTNAG 7 cut(s) 279, 529, 603, 772, 864, 1709, 1782
HpySE526I ACGT 2 cut(s) 1128, 1407
Hsp92II CATG 5 cut(s) 166, 182, 506, 1156, 1385
Kpn2I TCCGGA 1 cut(s) 454
Ksp22I TGATCA 2 cut(s) 352, 658
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 4 cut(s) 338, 847, 1061, 1591
LweI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1572
MaeI CTAG 3 cut(s) 618, 777, 1095
MaeII ACGT 2 cut(s) 1128, 1407
MaeIII GTNAC 4 cut(s) 1124, 1188, 1396, 1434
MboII GAAGA 6 cut(s) 302, 488, 749, 984, 1247, 1690
MfeI CAATTG 2 cut(s) 1362, 1443
MflI RGATCY 3 cut(s) 307, 523, 1261
MlyI GAGTC 2 cut(s) 350, 635
MmeI TCCRAC 2 cut(s) 1128, 1702
MroI TCCGGA 1 cut(s) 454
MseI TTAA 6 cut(s) 561, 837, 1019, 1056, 1647, 1776
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 1412, 1535
MunI CAATTG 2 cut(s) 1362, 1443
MvaI CCWGG 2 cut(s) 1412, 1535
MwoI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1610
NdeI CATATG 1 cut(s) 378
NheI GCTAGC 1 cut(s) 1094
NlaIII CATG 5 cut(s) 166, 182, 506, 1156, 1385
NlaIV GGNNCC 4 cut(s) 154, 525, 1263, 1565
NmuCI GTSAC 2 cut(s) 1124, 1434
PagI TCATGA 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 1447
PfeI GAWTC 3 cut(s) 173, 614, 1462
PkrI GCNGC 6 cut(s) 328, 501, 862, 1051, 1093, 1606
PleI GAGTC 2 cut(s) 349, 634
PpsI GAGTC 2 cut(s) 349, 634
PpuMI RGGWCCY 1 cut(s) 1563
PshAI GACNNNNGTC 1 cut(s) 1406
PshBI ATTAAT 1 cut(s) 1019
Psp5II RGGWCCY 1 cut(s) 1563
Psp6I CCWGG 2 cut(s) 1410, 1533
PspGI CCWGG 2 cut(s) 1410, 1533
PspN4I GGNNCC 4 cut(s) 154, 525, 1263, 1565
PspPI GGNCC 2 cut(s) 722, 1563
PspPPI RGGWCCY 1 cut(s) 1563
PstI CTGCAG 1 cut(s) 1226
PstNI CAGNNNCTG 2 cut(s) 241, 286
PsuI RGATCY 3 cut(s) 307, 523, 1261
RsaI GTAC 4 cut(s) 408, 972, 1072, 1146
RsaNI GTAC 4 cut(s) 407, 971, 1071, 1145
SalI GTCGAC 1 cut(s) 36
SaqAI TTAA 6 cut(s) 561, 837, 1019, 1056, 1647, 1776
SatI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1605
Sau96I GGNCC 2 cut(s) 722, 1563
SchI GAGTC 2 cut(s) 350, 635
ScrFI CCNGG 2 cut(s) 1412, 1535
SfaNI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1572
SfcI CTRYAG 1 cut(s) 1222
SinI GGWCC 2 cut(s) 722, 1563
SmlI CTYRAG 4 cut(s) 76, 112, 394, 889
SmoI CTYRAG 4 cut(s) 76, 112, 394, 889
SsiI CCGC 5 cut(s) 58, 150, 499, 1091, 1813
SspMI CTAG 3 cut(s) 618, 777, 1095
StyD4I CCNGG 2 cut(s) 1410, 1533
StyI CCWWGG 3 cut(s) 1577, 1629, 1802
TaaI ACNGT 6 cut(s) 704, 812, 820, 1212, 1434, 1720
TaiI ACGT 2 cut(s) 1131, 1410
TaqI TCGA 5 cut(s) 37, 88, 910, 924, 1010
TatI WGTACW 1 cut(s) 406
TauI GCSGC 2 cut(s) 502, 1094
TfiI GAWTC 3 cut(s) 173, 614, 1462
Tru1I TTAA 6 cut(s) 561, 837, 1019, 1056, 1647, 1776
Tru9I TTAA 6 cut(s) 561, 837, 1019, 1056, 1647, 1776
TseFI GTSAC 2 cut(s) 1124, 1434
TseI GCWGC 4 cut(s) 326, 860, 1049, 1604
Tsp45I GTSAC 2 cut(s) 1124, 1434
VpaK11BI GGWCC 2 cut(s) 722, 1563
VspI ATTAAT 1 cut(s) 1019
XapI RAATTY 7 cut(s) 211, 458, 648, 1316, 1471, 1620, 1694
XcmI CCANNNNNNNNNTGG 2 cut(s) 492, 1541
XmiI GTMKAC 2 cut(s) 37, 1742
XspI CTAG 3 cut(s) 618, 777, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.