Rh1AG120100
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002330
Physical Location & Seq
Reverse (-)
20618343 .. 20624006
5664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG120100.1

Sequence Viewer

Length: 1743 bp
ATGGAAGCAAAGATCGCAAAGGCATTGGATAGTGGTCGACTCTGTGTAAAGAGAAAGCGGGCAAAGAAGCCGACCTTGAGTAAGCATCGAGGCTTACCAAAGAAGCCGACCTTGAGTAAGCTCCGAAAGCGAAGGAAATTGTATGGATGCGGAACCAAACTCATGAGGTTTGAATCTCATGTTAGACGATCTTTACTTTCATCCTATTCAAATTTTACAAGAACTGGTGTGCCACAGCGTCTGATGTTTTACCAGAATGGCGAATGGAACAATTATCCTCAGGTTCTGGTTGACTTGGTTAGGAAAGATCTTCAGATAAAGAAAGCAGCTATCAAGATTGAGTCAAATGGTGATCATTTACTGCTTGATTTTTTGCATATGTTCCAGTTGAACTTGAGAACAGGTGTACAACACCCTATTGCTTGGATTGACGAAGCTGGTAGTTGCTTCTTTCCGGAATTTTACAGCGACGATGAAGATGAGCCAAATGGCAACTGGCGGCATGCAGATTGCAACGATCAGGATCCCTTAGTTGACGAGTGTTGTGGGTCTTGTGAGATTAAACTGCATCTGGAAATTGAAATAGATGGAATGGATCAACCTGAGTTGAAGGAATCTAGTGGGGAGTCAAATGGTTTAGTAAAGAAAATTCAGATTGATCAAATACCTGCCAGTAGTGGTTATGTGATGGAAGTTGAGAACAGTTGCAATGGAGGAGGTGGTCCACAAGTTGATGAAGATGTTGAGGATAATCAGCAGATGAGAAAGAACTTTGCTAGAGCAACTGAAACTCTAAATAGAAAGCTGGACTGTGATACTGTTCGTAATATATTTTTTAAAGGACTGAACACTTGTGATGCTGCTGAGCTTGTTGATATATACCGATGCTCAAGTAATCTGATGCAAGCTCGACTGGAACTTTTCGAGAAACAGGTTGAAATTACTAAAACATTTCGTGGAGACGCAAATGTACGATATGCTTGGCTTGCTTCTTCAAAAGGAGAACTTTCGACTATATTAATGTATGGGCTTGGTCATTGTGGACTGGCAGCAATTAAGCCCATTTATGGTACTGGTGTCCATCTCACAGCGGCTAGCTTCTCCAACACCTGTGCAAGTTATTGTGATGTTGATGAAAATGGAGTACGGCACATGATATTATGTCGTGTCATAATGGGAAATATGGAGTTACTTCACCCTGAAAGTAAACAGTTTCATCCCTGCAGTCAAGATTATGATAGTGGAGTGGATGATCTTCAGGATCCAAAAAATTACATTGTCTGGAATATGAACATCAATACACACATATATCCAGAATTTGTTGTTAGTTTCAAGCTCTCATCCAATACTGAAGGACATCCAATTGGAAGTGAGAAAAAGCATGGAGTTTCAGGGGTTACGACATACGTCCAGGGACCCAAGGGCTTTTTGCAATTACAGTCACCTGCAATTGATAAAGCTACTACTGGTTCTACCACTCAAAGGACCCCTAAATCACCTTGGATGCCTTTCCCTATGTTATTTGCTGCTATTGCAAGTAAAATTCCTCCCAAGGATATGGAACAAGTTAATGTTCATTATGACTTTTTCAGGGCAAAGAAGATAACCCGTGAGGAATTTGTAGAGAAGCTGAGGTTGACTGTTGGAGATAGTTTATTGAGGTCTACAATAACGGAACTTCAATGCAAGATACCCTTTAAATCTAAGAGTGAATTGGGAGTGCCAAAGTCAGCCCGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000160 GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0001505 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006807 GO:0006809 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009867 GO:0009873 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010154 GO:0010193 GO:0010228 GO:0012501 GO:0017144 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0032501 GO:0032502 GO:0032870 GO:0034641 GO:0035556 GO:0042133 GO:0042136 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045087 GO:0046209 GO:0046677 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0072593 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903409 GO:1905392 GO:2000377 GO:2001057
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

580

Amino Acids

65.45

Weight (kDa)

8.18

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WWE_5 PF23467 72 - 151 1.1e-34 WWE domain
PARP PF00644 288 - 402 7.6e-06 Poly(ADP-ribose) polymerase catalytic domain
RST PF12174 497 - 561 8e-27 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1453
Acc36I ACCTGC 2 cut(s) 676, 1453
AccI GTMKAC 2 cut(s) 37, 1664
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 5 cut(s) 58, 150, 499, 1091, 1735
AclWI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
AcsI RAATTY 6 cut(s) 211, 458, 648, 1316, 1542, 1616
AcuI CTGAAG 3 cut(s) 296, 1241, 1371
AfaI GTAC 4 cut(s) 408, 972, 1072, 1146
AfiI CCNNNNNNNGG 2 cut(s) 1067, 1482
AgsI TTSAA 9 cut(s) 173, 210, 391, 581, 610, 938, 996, 1333, 1682
AjnI CCWGG 1 cut(s) 1410
Alw26I GTCTC 1 cut(s) 954
AlwI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
AlwNI CAGNNNCTG 2 cut(s) 241, 286
Aor13HI TCCGGA 1 cut(s) 454
ApeKI GCWGC 4 cut(s) 326, 860, 1049, 1526
ApoI RAATTY 6 cut(s) 211, 458, 648, 1316, 1542, 1616
AseI ATTAAT 1 cut(s) 1019
AspS9I GGNCC 3 cut(s) 722, 1415, 1485
AsuHPI GGTGA 4 cut(s) 362, 1187, 1434, 1488
AsuNHI GCTAGC 1 cut(s) 1094
AvaII GGWCC 3 cut(s) 722, 1415, 1485
AxyI CCTNAGG 1 cut(s) 279
BaeI ACNNNNGTAYC 2 cut(s) 1062, 1095
BamHI GGATCC 2 cut(s) 523, 1261
BbvCI CCTCAGC 1 cut(s) 1631
BbvI GCAGC 4 cut(s) 338, 847, 1061, 1513
BccI CCATC 3 cut(s) 581, 682, 1089
BceAI ACGGC 1 cut(s) 1163
BciT130I CCWGG 1 cut(s) 1412
BclI TGATCA 2 cut(s) 352, 658
BcoDI GTCTC 1 cut(s) 954
BfaI CTAG 3 cut(s) 618, 777, 1095
BfmI CTRYAG 1 cut(s) 1222
BfuAI ACCTGC 2 cut(s) 676, 1453
BglII AGATCT 1 cut(s) 307
BisI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1527
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 6 cut(s) 328, 501, 862, 1051, 1093, 1528
Bme1390I CCNGG 1 cut(s) 1412
Bme18I GGWCC 3 cut(s) 722, 1415, 1485
BmgT120I GGNCC 3 cut(s) 722, 1415, 1485
BmiI GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1487
BmrFI CCNGG 1 cut(s) 1412
BmsI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1494
BmtI GCTAGC 1 cut(s) 1098
BoxI GACNNNNGTC 1 cut(s) 1406
Bpu10I CCTNAGC 1 cut(s) 1631
Bpu1102I GCTNAGC 1 cut(s) 864
BpuEI CTTGAG 4 cut(s) 97, 133, 415, 874
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 4 cut(s) 1411, 1419, 1499, 1551
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 2 cut(s) 1067, 1482
Bse1I ACTGG 8 cut(s) 229, 385, 500, 672, 918, 1050, 1078, 1471
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 715
Bse8I GATNNNNATC 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 1 cut(s) 1412
BseDI CCNNGG 4 cut(s) 1411, 1419, 1499, 1551
BseGI GGATG 7 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1509
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 1067, 1482
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 4 cut(s) 293, 594, 855, 1622
BseNI ACTGG 8 cut(s) 229, 385, 500, 672, 918, 1050, 1078, 1471
BseRI GAGGAG 1 cut(s) 729
BseXI GCAGC 4 cut(s) 338, 847, 1061, 1513
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 1428
BslI CCNNNNNNNGG 2 cut(s) 1067, 1482
BsmAI GTCTC 1 cut(s) 954
BsmBI CGTCTC 1 cut(s) 954
BsmFI GGGAC 1 cut(s) 1428
Bsp13I TCCGGA 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 5 cut(s) 58, 150, 499, 1091, 1735
BspCNI CTCAG 4 cut(s) 292, 595, 856, 1623
BspEI TCCGGA 1 cut(s) 454
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1487
BspMAI CTGCAG 1 cut(s) 1226
BspMI ACCTGC 2 cut(s) 676, 1453
BspOI GCTAGC 1 cut(s) 1098
BspPI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
BsrDI GCAATG 1 cut(s) 715
BsrGI TGTACA 1 cut(s) 406
BsrI ACTGG 8 cut(s) 229, 385, 500, 672, 918, 1050, 1078, 1471
BssECI CCNNGG 4 cut(s) 1411, 1419, 1499, 1551
BssT1I CCWWGG 3 cut(s) 1419, 1499, 1551
Bst2UI CCWGG 1 cut(s) 1412
Bst4CI ACNGT 6 cut(s) 704, 812, 820, 1212, 1440, 1642
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 6 cut(s) 60, 504, 906, 987, 1096, 1735
BstDEI CTNAG 6 cut(s) 279, 529, 603, 864, 1631, 1704
BstF5I GGATG 7 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1509
BstMAI GTCTC 1 cut(s) 954
BstMWI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1532
BstNI CCWGG 1 cut(s) 1412
BstNSI RCATGY 1 cut(s) 506
BstPAI GACNNNNGTC 1 cut(s) 1406
BstSCI CCNGG 1 cut(s) 1410
BstSFI CTRYAG 1 cut(s) 1222
BstV1I GCAGC 4 cut(s) 338, 847, 1061, 1513
BstX2I RGATCY 3 cut(s) 307, 523, 1261
BstXI CCANNNNNNTGG 1 cut(s) 1558
BstYI RGATCY 3 cut(s) 307, 523, 1261
Bsu36I CCTNAGG 1 cut(s) 279
BtsCI GGATG 7 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1509
BtsIMutI CAGTG 1 cut(s) 1738
BveI ACCTGC 2 cut(s) 676, 1453
Cac8I GCNNGC 6 cut(s) 60, 504, 906, 987, 1096, 1735
CaiI CAGNNNCTG 2 cut(s) 241, 286
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 722, 1415, 1485
CseI GACGC 2 cut(s) 227, 971
Csp6I GTAC 4 cut(s) 407, 971, 1071, 1145
CviAII CATG 5 cut(s) 163, 179, 503, 1153, 1382
CviQI GTAC 4 cut(s) 407, 971, 1071, 1145
DdeI CTNAG 6 cut(s) 279, 529, 603, 864, 1631, 1704
DraI TTTAAA 2 cut(s) 838, 1699
Eco130I CCWWGG 3 cut(s) 1419, 1499, 1551
Eco47I GGWCC 3 cut(s) 722, 1415, 1485
Eco57I CTGAAG 3 cut(s) 296, 1241, 1371
Eco81I CCTNAGG 1 cut(s) 279
EcoO109I RGGNCCY 2 cut(s) 1415, 1485
EcoRII CCWGG 1 cut(s) 1410
EcoT14I CCWWGG 3 cut(s) 1419, 1499, 1551
ErhI CCWWGG 3 cut(s) 1419, 1499, 1551
Esp3I CGTCTC 1 cut(s) 954
FaeI CATG 5 cut(s) 166, 182, 506, 1156, 1385
FalI AAGNNNNNCTT 8 cut(s) 59, 91, 95, 127, 990, 1022, 1679, 1711
FaqI GGGAC 1 cut(s) 1428
FatI CATG 5 cut(s) 162, 178, 502, 1152, 1381
FauI CCCGC 1 cut(s) 51
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 2 cut(s) 352, 658
FblI GTMKAC 2 cut(s) 37, 1664
Fnu4HI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1527
FokI GGATG 7 cut(s) 159, 187, 1203, 1262, 1327, 1344, 1516
Fsp4HI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1527
FspBI CTAG 3 cut(s) 618, 777, 1095
GluI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1527
HapII CCGG 1 cut(s) 455
HgaI GACGC 2 cut(s) 227, 971
Hin1II CATG 5 cut(s) 166, 182, 506, 1156, 1385
HincII GTYRAC 4 cut(s) 38, 292, 535, 1638
HindII GTYRAC 4 cut(s) 38, 292, 535, 1638
HinfI GANTC 5 cut(s) 39, 173, 341, 614, 626
HpaII CCGG 1 cut(s) 455
HphI GGTGA 4 cut(s) 362, 1187, 1434, 1488
Hpy166II GTNNAC 9 cut(s) 38, 292, 407, 535, 725, 1043, 1208, 1638, 1665
Hpy188I TCNGA 5 cut(s) 125, 243, 315, 654, 900
Hpy8I GTNNAC 9 cut(s) 38, 292, 407, 535, 725, 1043, 1208, 1638, 1665
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 126, 604, 1346
HpyCH4III ACNGT 6 cut(s) 704, 812, 820, 1212, 1440, 1642
HpyCH4IV ACGT 1 cut(s) 1407
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1532
HpyF3I CTNAG 6 cut(s) 279, 529, 603, 864, 1631, 1704
HpySE526I ACGT 1 cut(s) 1407
Hsp92II CATG 5 cut(s) 166, 182, 506, 1156, 1385
KflI GGGWCCC 1 cut(s) 1415
Kpn2I TCCGGA 1 cut(s) 454
Ksp22I TGATCA 2 cut(s) 352, 658
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 4 cut(s) 338, 847, 1061, 1513
LweI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1494
MaeI CTAG 3 cut(s) 618, 777, 1095
MaeII ACGT 1 cut(s) 1407
MaeIII GTNAC 3 cut(s) 1188, 1396, 1440
MboII GAAGA 6 cut(s) 302, 488, 749, 984, 1247, 1612
MfeI CAATTG 2 cut(s) 1362, 1449
MflI RGATCY 3 cut(s) 307, 523, 1261
MlyI GAGTC 3 cut(s) 33, 350, 635
MmeI TCCRAC 2 cut(s) 1128, 1624
MroI TCCGGA 1 cut(s) 454
MseI TTAA 6 cut(s) 561, 837, 1019, 1056, 1569, 1698
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 1412
MunI CAATTG 2 cut(s) 1362, 1449
MvaI CCWGG 1 cut(s) 1412
MwoI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1532
NdeI CATATG 1 cut(s) 378
NheI GCTAGC 1 cut(s) 1094
NlaIII CATG 5 cut(s) 166, 182, 506, 1156, 1385
NlaIV GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1487
NmuCI GTSAC 1 cut(s) 1440
NspI RCATGY 1 cut(s) 506
PaeI GCATGC 1 cut(s) 506
PagI TCATGA 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 1453
PfeI GAWTC 2 cut(s) 173, 614
PkrI GCNGC 6 cut(s) 328, 501, 862, 1051, 1093, 1528
PleI GAGTC 3 cut(s) 33, 349, 634
PpsI GAGTC 3 cut(s) 33, 349, 634
PpuMI RGGWCCY 2 cut(s) 1415, 1485
PshAI GACNNNNGTC 1 cut(s) 1406
PshBI ATTAAT 1 cut(s) 1019
Psp5II RGGWCCY 2 cut(s) 1415, 1485
Psp6I CCWGG 1 cut(s) 1410
PspGI CCWGG 1 cut(s) 1410
PspN4I GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1487
PspPI GGNCC 3 cut(s) 722, 1415, 1485
PspPPI RGGWCCY 2 cut(s) 1415, 1485
PstI CTGCAG 1 cut(s) 1226
PstNI CAGNNNCTG 2 cut(s) 241, 286
PsuI RGATCY 3 cut(s) 307, 523, 1261
RsaI GTAC 4 cut(s) 408, 972, 1072, 1146
RsaNI GTAC 4 cut(s) 407, 971, 1071, 1145
SalI GTCGAC 1 cut(s) 36
SaqAI TTAA 6 cut(s) 561, 837, 1019, 1056, 1569, 1698
SatI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1527
Sau96I GGNCC 3 cut(s) 722, 1415, 1485
SchI GAGTC 3 cut(s) 33, 350, 635
ScrFI CCNGG 1 cut(s) 1412
SfaNI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1494
SfcI CTRYAG 1 cut(s) 1222
SinI GGWCC 3 cut(s) 722, 1415, 1485
SmlI CTYRAG 4 cut(s) 76, 112, 394, 889
SmoI CTYRAG 4 cut(s) 76, 112, 394, 889
SphI GCATGC 1 cut(s) 506
SsiI CCGC 5 cut(s) 58, 150, 499, 1091, 1735
SspMI CTAG 3 cut(s) 618, 777, 1095
StyD4I CCNGG 1 cut(s) 1410
StyI CCWWGG 3 cut(s) 1419, 1499, 1551
TaaI ACNGT 6 cut(s) 704, 812, 820, 1212, 1440, 1642
TaiI ACGT 1 cut(s) 1410
TaqI TCGA 5 cut(s) 37, 88, 910, 924, 1010
TatI WGTACW 1 cut(s) 406
TauI GCSGC 2 cut(s) 502, 1094
TfiI GAWTC 2 cut(s) 173, 614
Tru1I TTAA 6 cut(s) 561, 837, 1019, 1056, 1569, 1698
Tru9I TTAA 6 cut(s) 561, 837, 1019, 1056, 1569, 1698
TseFI GTSAC 1 cut(s) 1440
TseI GCWGC 4 cut(s) 326, 860, 1049, 1526
Tsp45I GTSAC 1 cut(s) 1440
TspDTI ATGAA 7 cut(s) 189, 489, 750, 1149, 1205, 1304, 1565
TspGWI ACGGA 1 cut(s) 1688
VpaK11BI GGWCC 3 cut(s) 722, 1415, 1485
VspI ATTAAT 1 cut(s) 1019
XapI RAATTY 6 cut(s) 211, 458, 648, 1316, 1542, 1616
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XmiI GTMKAC 2 cut(s) 37, 1664
XspI CTAG 3 cut(s) 618, 777, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.