Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002330

Physical Location & Seq

Genomic Coordinates Forward (+)

15894551 .. 15896718

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCTCGATCCGTTTCTTGTTCGCCGACTCGCGACAGTAACCCGGTCAGGACTCTGCCGTACAGCCACTAAGCGGCGGCGCACGGCTCTCAATCGCTTCGTCCTCGACGCGGTTCCAACTCAGGACACCCAACGCGGTACCAACTCGCTTCGTCTGGGTCTTCCAGCTGCGCCGCTCAATTTCGCCATTGAAGCTCGTCGCTGGGAGTTCATACTTGGGGCGATTTGGATGAAGGCTTCGGGTTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0001505 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006807 GO:0006809 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009867 GO:0009873 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010154 GO:0010193 GO:0010228 GO:0012501 GO:0017144 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0032501 GO:0032502 GO:0032870 GO:0034641 GO:0035556 GO:0042133 GO:0042136 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045087 GO:0046209 GO:0046677 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0072593 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903409 GO:1905392 GO:2000377 GO:2001057

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

83

Amino Acids

9.35

Weight (kDa)

11.86

Isoelectric Point (pI)

68.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32230 AT1G32230 AT1G32230 AT1G32230 AT1G32230 AT1G32230 AT2G35510 AT2G35510 AT2G35510
fragaria_vesca	FvH4_5g23020 FvH4_5g23040
malus_domestica	MD02G1259200.v1.1 MD07G1061500.v1.1
prunus_persica	Prupe.2G071200_v2.0.a1 Prupe.2G071200_v2.0.a1 Prupe.2G071200_v2.0.a1 Prupe.2G071200_v2.0.a1 Prupe.2G071200_v2.0.a1 Prupe.2G071200_v2.0.a1 Prupe.2G071200_v2.0.a1
pyrus_communis	pycom02g22060
rosa_chinensis	RchiOBHm_Chr1g0331751 RchiOBHm_Chr7g0211751
rosa_laevigata	RLG00000002971 RLG00000029717
rosa_multiflora	Rmu_sc0001875.1_g000022 Rmu_ssc0000089.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247470 Rroxscaffold_4G00318810
rosa_rugosa	Rorug01G0096000 Rorug01G0096100 Rorug07G0128300
rosa_samantha	Rh1AG120100 Rh1BG091700 Rh1CG115100 Rh1DG125400 Rh7AG261000 Rh7BG254500 Rh7CG277500 Rh7DG267600
rosa_wichuraiana	Rw1G009710 Rw7G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	175
AccII	CGCG	3 cut(s)	32, 110, 135
AciI	CCGC	5 cut(s)	73, 76, 110, 135, 173
AclWI	GGATC	1 cut(s)	2
AfaI	GTAC	2 cut(s)	61, 139
AfiI	CCNNNNNNNGG	2 cut(s)	72, 109
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	3 cut(s)	167, 194, 249
AluI	AGCT	3 cut(s)	167, 194, 249
AlwI	GGATC	1 cut(s)	2
ApeKI	GCWGC	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	81, 172
AsuC2I	CCSGG	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	2 cut(s)	42, 99
BcnI	CCSGG	1 cut(s)	43
BisI	GCNGC	4 cut(s)	74, 77, 168, 173
BlsI	GCNGC	4 cut(s)	75, 78, 169, 174
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	114, 139
BmrFI	CCNGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 109
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	72, 109
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	201
Bsh1236I	CGCG	3 cut(s)	32, 110, 135
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	72, 109
Bsp143I	GATC	1 cut(s)	7
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	5 cut(s)	73, 76, 110, 135, 173
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	3 cut(s)	32, 110, 135
BspLI	GGNNCC	2 cut(s)	114, 139
BspPI	GGATC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	175
BssMI	GATC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	69, 120
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	3 cut(s)	32, 110, 135
BstHHI	GCGC	2 cut(s)	81, 172
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	3 cut(s)	32, 110, 135
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	234
BtuMI	TCGCGA	1 cut(s)	32
CfoI	GCGC	2 cut(s)	81, 172
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	60, 138
CviJI	RGCY	6 cut(s)	65, 86, 167, 194, 236, 249
CviKI_1	RGCY	6 cut(s)	65, 86, 167, 194, 236, 249
CviQI	GTAC	2 cut(s)	60, 138
DdeI	CTNAG	2 cut(s)	69, 120
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
FaiI	YATR	1 cut(s)	212
Fnu4HI	GCNGC	4 cut(s)	74, 77, 168, 173
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	74, 77, 168, 173
GlaI	GCGC	2 cut(s)	80, 171
GluI	GCNGC	4 cut(s)	74, 77, 168, 173
GsaI	CCCAGC	1 cut(s)	205
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	81, 172
Hin6I	GCGC	2 cut(s)	79, 170
HinP1I	GCGC	2 cut(s)	79, 170
HinfI	GANTC	2 cut(s)	27, 51
HpaII	CCGG	1 cut(s)	43
Hpy188III	TCNNGA	3 cut(s)	31, 48, 122
Hpy99I	CGWCG	2 cut(s)	110, 201
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	69, 120
HspAI	GCGC	2 cut(s)	79, 170
KpnI	GGTACC	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	6 cut(s)	33, 56, 107, 140, 177, 187
Lsp1109I	GCAGC	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	9
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	21, 45
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	1 cut(s)	113
MspA1I	CMGCKG	2 cut(s)	167, 249
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	43
MvnI	CGCG	3 cut(s)	32, 110, 135
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	7
NlaIV	GGNNCC	2 cut(s)	114, 139
NruI	TCGCGA	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	75, 78, 169, 174
PleI	GAGTC	2 cut(s)	21, 45
PpsI	GAGTC	2 cut(s)	21, 45
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	114, 139
PvuII	CAGCTG	2 cut(s)	167, 249
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	2 cut(s)	61, 139
RsaNI	GTAC	2 cut(s)	60, 138
SatI	GCNGC	4 cut(s)	74, 77, 168, 173
Sau3AI	GATC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	21, 45
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	3 cut(s)	169, 196, 251
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	5 cut(s)	73, 76, 110, 135, 173
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	6, 105
TasI	AATT	1 cut(s)	178
TauI	GCSGC	3 cut(s)	76, 79, 175
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	199, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.