Rh1BG091700
NAC Family

inactive poly ADP-ribose polymerase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
14688954 .. 14694594
5641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG091700.1

Sequence Viewer

Length: 1764 bp
ATGGAAGCAAAGATCGCAAAGGCATTGGATAGTGATCGACGAGTTAGGCTCGGTGTAAAGAGAAATTGGGCAACTCGGTCTGCTGCATATTTTCCTGGAGCTAAGCATCGAGGCTTACCAAAGAAGCCGACCTTGAGTAAGCTCCGAAAGCGAAGGAAATTGTATGGATGCGGAACCAAACTCATGAGTTTTGAATCTCATGTTAGACGATCTTTACTTTCATCCTATTCAAATTTTACAAGAACTGGTGTGCCACAGCGTCTGATGTTTTACCAGAATGGCGAATGGAACAATTATCCTCAGGTTCTGGTTGACTTGGTTAGGAAAGATCTTCAGATAAAGAAAGCAGCTATCAAGATTGAGTCAAATGGTGATCATTTACTGCTAGATTTTTTGCATATGTTCCAGTTGAACTTGAGAACAGGTGTACAACACCCTATTGCTTGGATTGACGAAGCTGGTAGTTGCTTCTTTCCGGAAATTTACAGCGACGATGAAGATGAGCCAAATGGCAACTGGCGGCATGGAGATTGCAACGATCAGGATCCCTTAGTTGACGAGTGTTGTGGGTCTTGTGAGATTAAACTGCATCTGGAAATTGAAATAGATGGAATGGATCAACCTGAGTTGAAGGAATCTAGTGGGGAGTCAAATGGTTTAGTAAAGAAAATTCAGATTGATCAAATACCTGCCAGTAGTGGTTATGTGATGGAAGTTGAGAACAGTTGCAATGGAGGAGGTGGTCCACAAGTTGATGAAGATGTTGAGGATAATCAGCAGATGAGAAAGAATTTAGCTAGAGCAACTGAAACTCTAAATAGAAAGCTGGACTGTGATACTGTTCGTAATATATTTTTTAAAGGAATGAACACTTGTGATGCTGCTGAGCTTGTTGATATATACCGATGCTCAAGTAATCTGATGCAAGCTCGACTGGAACTTTTCGAGAAACAGGTTGAAATTACTAAAACATTTCGCGGAGACGCAAATGTACGATATGCTTGGCTTGCTTCTTCAAAAGGAGAACTTTCGACTATATTAATGTATGGGCTTGGTCATTGTGGACTAGCAGCAATTAAGCCCATTTATGGTACTGGTGTTCATCTCACAGCGGCTAGCTTCTCCAACACCTGTGCAAGTTATTGTGATGTTGATGAAAATGGAGTACGGCACATGTTATTCTGTCGTGTCATAATGGGAAATATGGAGTTACTTCACCCTGAAAGCAAACAGTTTCATCCCTGCAGTCAAGATTATGATAGTGGAGTGGATGATATTCAGGATCCAAAAAATTACATTGTCTGGAATATGAACATCAATACACACATATATCCAGAATTTGTTGTTAGTTTCAAGCTCTCATCCAATACTGAAGGACATCCAAGTGGAAATGAGAAAAAGCATGGAGTTTCAGGGGTTACGACATACGTCCAGGGACCCAAGGGCTTTTTGCAATTACAGTCACCTGCAATTGATAAAGCTACTACTGGTTCTACCACTCAAAGGACCCCTAAATCACCTTGGATGCCTTTCCCTATGTTATTTGCTGCTATTGCAAGTAAAATTCCTCCCAAGGATATGGAACAAGTTAATGTTCATTATGACTTTTTCAGGGCAAAGAAGATAACCCGTGAGGAATTTGTAGAGAAGCTGAGGTTGACTGTTGGAGATAGTTTATTGAGGTCTACAATAACGGAACTTCAATGCAAGATACCCTTTAAATCTAAGAGTGAATTGGGAGTGTCAAGGACAGCCCGCCACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

66.19

Weight (kDa)

7.53

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WWE_5 PF23467 79 - 158 1.2e-34 WWE domain
RST PF12174 504 - 568 8.2e-27 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1474
Acc36I ACCTGC 2 cut(s) 697, 1474
AccI GTMKAC 1 cut(s) 1685
AccII CGCG 1 cut(s) 978
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 5 cut(s) 171, 520, 978, 1112, 1756
AclWI GGATC 5 cut(s) 539, 552, 624, 1277, 1290
AcsI RAATTY 7 cut(s) 232, 480, 669, 790, 1337, 1563, 1637
AcuI CTGAAG 2 cut(s) 317, 1392
AfaI GTAC 4 cut(s) 429, 993, 1093, 1167
AfiI CCNNNNNNNGG 2 cut(s) 1088, 1503
AflIII ACRYGT 1 cut(s) 1173
AgsI TTSAA 9 cut(s) 194, 231, 412, 602, 631, 959, 1017, 1354, 1703
AjnI CCWGG 2 cut(s) 94, 1431
Alw26I GTCTC 1 cut(s) 975
AlwI GGATC 5 cut(s) 539, 552, 624, 1277, 1290
AlwNI CAGNNNCTG 2 cut(s) 262, 307
Aor13HI TCCGGA 1 cut(s) 475
ApeKI GCWGC 5 cut(s) 83, 347, 881, 1070, 1547
ApoI RAATTY 7 cut(s) 232, 480, 669, 790, 1337, 1563, 1637
AseI ATTAAT 1 cut(s) 1040
AspS9I GGNCC 3 cut(s) 743, 1436, 1506
AsuHPI GGTGA 4 cut(s) 383, 1208, 1455, 1509
AsuNHI GCTAGC 1 cut(s) 1115
AvaII GGWCC 3 cut(s) 743, 1436, 1506
AxyI CCTNAGG 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 1083, 1116
BamHI GGATCC 2 cut(s) 544, 1282
BbvCI CCTCAGC 1 cut(s) 1652
BbvI GCAGC 5 cut(s) 70, 359, 868, 1082, 1534
BccI CCATC 2 cut(s) 602, 703
BceAI ACGGC 1 cut(s) 1184
BciT130I CCWGG 2 cut(s) 96, 1433
BclI TGATCA 2 cut(s) 373, 679
BcoDI GTCTC 1 cut(s) 975
BfaI CTAG 5 cut(s) 386, 639, 798, 1067, 1116
BfmI CTRYAG 1 cut(s) 1243
BfuAI ACCTGC 2 cut(s) 697, 1474
BglII AGATCT 1 cut(s) 328
BisI GCNGC 7 cut(s) 84, 348, 521, 882, 1071, 1113, 1548
BlpI GCTNAGC 2 cut(s) 102, 885
BlsI GCNGC 7 cut(s) 85, 349, 522, 883, 1072, 1114, 1549
Bme1390I CCNGG 2 cut(s) 96, 1433
Bme18I GGWCC 3 cut(s) 743, 1436, 1506
BmgT120I GGNCC 3 cut(s) 743, 1436, 1506
BmiI GGNNCC 6 cut(s) 175, 546, 1284, 1437, 1438, 1508
BmrFI CCNGG 2 cut(s) 96, 1433
BmsI GCATC 7 cut(s) 115, 158, 598, 868, 896, 912, 1515
BmtI GCTAGC 1 cut(s) 1119
BoxI GACNNNNGTC 1 cut(s) 1427
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 1652
Bpu1102I GCTNAGC 2 cut(s) 102, 885
BpuEI CTTGAG 3 cut(s) 154, 436, 895
BsaBI GATNNNNATC 2 cut(s) 33, 543
BsaJI CCNNGG 4 cut(s) 1432, 1440, 1520, 1572
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 2 cut(s) 1088, 1503
Bse1I ACTGG 7 cut(s) 250, 406, 521, 693, 939, 1099, 1492
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 736
Bse8I GATNNNNATC 2 cut(s) 33, 543
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 2 cut(s) 96, 1433
BseDI CCNNGG 4 cut(s) 1432, 1440, 1520, 1572
BseGI GGATG 7 cut(s) 173, 221, 1237, 1276, 1361, 1378, 1530
BseJI GATNNNNATC 2 cut(s) 33, 543
BseLI CCNNNNNNNGG 2 cut(s) 1088, 1503
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 4 cut(s) 314, 615, 876, 1643
BseNI ACTGG 7 cut(s) 250, 406, 521, 693, 939, 1099, 1492
BseRI GAGGAG 1 cut(s) 750
BseXI GCAGC 5 cut(s) 70, 359, 868, 1082, 1534
Bsh1236I CGCG 1 cut(s) 978
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 1449
BslI CCNNNNNNNGG 2 cut(s) 1088, 1503
BsmAI GTCTC 1 cut(s) 975
BsmBI CGTCTC 1 cut(s) 975
BsmFI GGGAC 1 cut(s) 1449
Bsp13I TCCGGA 1 cut(s) 475
Bsp1407I TGTACA 1 cut(s) 427
Bsp1720I GCTNAGC 2 cut(s) 102, 885
BspACI CCGC 5 cut(s) 171, 520, 978, 1112, 1756
BspCNI CTCAG 4 cut(s) 313, 616, 877, 1644
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 1 cut(s) 978
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 6 cut(s) 175, 546, 1284, 1437, 1438, 1508
BspMAI CTGCAG 1 cut(s) 1247
BspMI ACCTGC 2 cut(s) 697, 1474
BspOI GCTAGC 1 cut(s) 1119
BspPI GGATC 5 cut(s) 539, 552, 624, 1277, 1290
BsrDI GCAATG 1 cut(s) 736
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 7 cut(s) 250, 406, 521, 693, 939, 1099, 1492
BssECI CCNNGG 4 cut(s) 1432, 1440, 1520, 1572
BssT1I CCWWGG 3 cut(s) 1440, 1520, 1572
Bst2UI CCWGG 2 cut(s) 96, 1433
Bst4CI ACNGT 6 cut(s) 725, 833, 841, 1233, 1461, 1663
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 4 cut(s) 927, 1008, 1117, 1756
BstDEI CTNAG 7 cut(s) 102, 300, 550, 624, 885, 1652, 1725
BstF5I GGATG 7 cut(s) 173, 221, 1237, 1276, 1361, 1378, 1530
BstFNI CGCG 1 cut(s) 978
BstMAI GTCTC 1 cut(s) 975
BstMWI GCNNNNNNNGC 4 cut(s) 14, 148, 1007, 1553
BstNI CCWGG 2 cut(s) 96, 1433
BstNSI RCATGY 1 cut(s) 1177
BstPAI GACNNNNGTC 1 cut(s) 1427
BstSCI CCNGG 2 cut(s) 94, 1431
BstSFI CTRYAG 1 cut(s) 1243
BstUI CGCG 1 cut(s) 978
BstV1I GCAGC 5 cut(s) 70, 359, 868, 1082, 1534
BstX2I RGATCY 3 cut(s) 328, 544, 1282
BstXI CCANNNNNNTGG 1 cut(s) 1579
BstYI RGATCY 3 cut(s) 328, 544, 1282
Bsu36I CCTNAGG 1 cut(s) 300
BtsCI GGATG 7 cut(s) 173, 221, 1237, 1276, 1361, 1378, 1530
BtsIMutI CAGTG 1 cut(s) 1759
BveI ACCTGC 2 cut(s) 697, 1474
Cac8I GCNNGC 4 cut(s) 927, 1008, 1117, 1756
CaiI CAGNNNCTG 2 cut(s) 262, 307
CciI TCATGA 1 cut(s) 183
Cfr13I GGNCC 3 cut(s) 743, 1436, 1506
CseI GACGC 2 cut(s) 248, 992
Csp6I GTAC 4 cut(s) 428, 992, 1092, 1166
CviAII CATG 5 cut(s) 184, 200, 524, 1174, 1403
CviQI GTAC 4 cut(s) 428, 992, 1092, 1166
DdeI CTNAG 7 cut(s) 102, 300, 550, 624, 885, 1652, 1725
DraI TTTAAA 2 cut(s) 859, 1720
Eco130I CCWWGG 3 cut(s) 1440, 1520, 1572
Eco47I GGWCC 3 cut(s) 743, 1436, 1506
Eco57I CTGAAG 2 cut(s) 317, 1392
Eco81I CCTNAGG 1 cut(s) 300
EcoO109I RGGNCCY 2 cut(s) 1436, 1506
EcoRII CCWGG 2 cut(s) 94, 1431
EcoT14I CCWWGG 3 cut(s) 1440, 1520, 1572
ErhI CCWWGG 3 cut(s) 1440, 1520, 1572
Esp3I CGTCTC 1 cut(s) 975
FaeI CATG 5 cut(s) 187, 203, 527, 1177, 1406
FalI AAGNNNNNCTT 6 cut(s) 116, 148, 1011, 1043, 1700, 1732
FaqI GGGAC 1 cut(s) 1449
FatI CATG 5 cut(s) 183, 199, 523, 1173, 1402
FauNDI CATATG 1 cut(s) 399
FbaI TGATCA 2 cut(s) 373, 679
FblI GTMKAC 1 cut(s) 1685
Fnu4HI GCNGC 7 cut(s) 84, 348, 521, 882, 1071, 1113, 1548
FokI GGATG 7 cut(s) 180, 208, 1224, 1283, 1348, 1365, 1537
Fsp4HI GCNGC 7 cut(s) 84, 348, 521, 882, 1071, 1113, 1548
FspBI CTAG 5 cut(s) 386, 639, 798, 1067, 1116
GluI GCNGC 7 cut(s) 84, 348, 521, 882, 1071, 1113, 1548
GsuI CTGGAG 1 cut(s) 117
HapII CCGG 1 cut(s) 476
HgaI GACGC 2 cut(s) 248, 992
Hin1II CATG 5 cut(s) 187, 203, 527, 1177, 1406
HincII GTYRAC 3 cut(s) 313, 556, 1659
HindII GTYRAC 3 cut(s) 313, 556, 1659
HinfI GANTC 4 cut(s) 194, 362, 635, 647
HpaII CCGG 1 cut(s) 476
HphI GGTGA 4 cut(s) 383, 1208, 1455, 1509
Hpy166II GTNNAC 7 cut(s) 313, 428, 556, 746, 1064, 1659, 1686
Hpy188I TCNGA 5 cut(s) 146, 264, 336, 675, 921
Hpy8I GTNNAC 7 cut(s) 313, 428, 556, 746, 1064, 1659, 1686
Hpy99I CGWCG 2 cut(s) 42, 494
HpyAV CCTTC 3 cut(s) 147, 625, 1367
HpyCH4III ACNGT 6 cut(s) 725, 833, 841, 1233, 1461, 1663
HpyCH4IV ACGT 1 cut(s) 1428
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 148, 1007, 1553
HpyF3I CTNAG 7 cut(s) 102, 300, 550, 624, 885, 1652, 1725
HpySE526I ACGT 1 cut(s) 1428
Hsp92II CATG 5 cut(s) 187, 203, 527, 1177, 1406
KflI GGGWCCC 1 cut(s) 1436
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 2 cut(s) 373, 679
LmnI GCTCC 2 cut(s) 98, 147
Lsp1109I GCAGC 5 cut(s) 70, 359, 868, 1082, 1534
LweI GCATC 7 cut(s) 115, 158, 598, 868, 896, 912, 1515
MaeI CTAG 5 cut(s) 386, 639, 798, 1067, 1116
MaeII ACGT 1 cut(s) 1428
MaeIII GTNAC 3 cut(s) 1209, 1417, 1461
MboII GAAGA 5 cut(s) 323, 509, 770, 1005, 1633
MfeI CAATTG 1 cut(s) 1470
MflI RGATCY 3 cut(s) 328, 544, 1282
MlyI GAGTC 2 cut(s) 371, 656
MmeI TCCRAC 2 cut(s) 1149, 1645
MnlI CCTC 9 cut(s) 104, 309, 728, 731, 760, 1578, 1627, 1647, 1674
MroI TCCGGA 1 cut(s) 475
MseI TTAA 6 cut(s) 582, 858, 1040, 1077, 1590, 1719
MslI CAYNNNNRTG 1 cut(s) 1383
MspA1I CMGCKG 1 cut(s) 1112
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 96, 1433
MunI CAATTG 1 cut(s) 1470
MvaI CCWGG 2 cut(s) 96, 1433
MvnI CGCG 1 cut(s) 978
MwoI GCNNNNNNNGC 4 cut(s) 14, 148, 1007, 1553
NdeI CATATG 1 cut(s) 399
NheI GCTAGC 1 cut(s) 1115
NlaIII CATG 5 cut(s) 187, 203, 527, 1177, 1406
NlaIV GGNNCC 6 cut(s) 175, 546, 1284, 1437, 1438, 1508
NmuCI GTSAC 1 cut(s) 1461
NspI RCATGY 1 cut(s) 1177
PagI TCATGA 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 1474
PciI ACATGT 1 cut(s) 1173
PfeI GAWTC 2 cut(s) 194, 635
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 7 cut(s) 85, 349, 522, 883, 1072, 1114, 1549
PleI GAGTC 2 cut(s) 370, 655
PpsI GAGTC 2 cut(s) 370, 655
PpuMI RGGWCCY 2 cut(s) 1436, 1506
PscI ACATGT 1 cut(s) 1173
PshAI GACNNNNGTC 1 cut(s) 1427
PshBI ATTAAT 1 cut(s) 1040
Psp5II RGGWCCY 2 cut(s) 1436, 1506
Psp6I CCWGG 2 cut(s) 94, 1431
PspGI CCWGG 2 cut(s) 94, 1431
PspN4I GGNNCC 6 cut(s) 175, 546, 1284, 1437, 1438, 1508
PspPI GGNCC 3 cut(s) 743, 1436, 1506
PspPPI RGGWCCY 2 cut(s) 1436, 1506
PstI CTGCAG 1 cut(s) 1247
PstNI CAGNNNCTG 2 cut(s) 262, 307
PsuI RGATCY 3 cut(s) 328, 544, 1282
RsaI GTAC 4 cut(s) 429, 993, 1093, 1167
RsaNI GTAC 4 cut(s) 428, 992, 1092, 1166
RseI CAYNNNNRTG 1 cut(s) 1383
SaqAI TTAA 6 cut(s) 582, 858, 1040, 1077, 1590, 1719
SatI GCNGC 7 cut(s) 84, 348, 521, 882, 1071, 1113, 1548
Sau96I GGNCC 3 cut(s) 743, 1436, 1506
SchI GAGTC 2 cut(s) 371, 656
ScrFI CCNGG 2 cut(s) 96, 1433
SfaNI GCATC 7 cut(s) 115, 158, 598, 868, 896, 912, 1515
SfcI CTRYAG 1 cut(s) 1243
SinI GGWCC 3 cut(s) 743, 1436, 1506
SmiMI CAYNNNNRTG 1 cut(s) 1383
SmlI CTYRAG 3 cut(s) 133, 415, 910
SmoI CTYRAG 3 cut(s) 133, 415, 910
SsiI CCGC 5 cut(s) 171, 520, 978, 1112, 1756
SspMI CTAG 5 cut(s) 386, 639, 798, 1067, 1116
StyD4I CCNGG 2 cut(s) 94, 1431
StyI CCWWGG 3 cut(s) 1440, 1520, 1572
TaaI ACNGT 6 cut(s) 725, 833, 841, 1233, 1461, 1663
TaiI ACGT 1 cut(s) 1431
TaqI TCGA 5 cut(s) 37, 109, 931, 945, 1031
TaqII GACCGA 1 cut(s) 66
TatI WGTACW 1 cut(s) 427
TauI GCSGC 2 cut(s) 523, 1115
TfiI GAWTC 2 cut(s) 194, 635
Tru1I TTAA 6 cut(s) 582, 858, 1040, 1077, 1590, 1719
Tru9I TTAA 6 cut(s) 582, 858, 1040, 1077, 1590, 1719
TseFI GTSAC 1 cut(s) 1461
TseI GCWGC 5 cut(s) 83, 347, 881, 1070, 1547
Tsp45I GTSAC 1 cut(s) 1461
TspDTI ATGAA 9 cut(s) 210, 510, 771, 881, 1091, 1170, 1226, 1325, 1586
TspGWI ACGGA 1 cut(s) 1709
VpaK11BI GGWCC 3 cut(s) 743, 1436, 1506
VspI ATTAAT 1 cut(s) 1040
XapI RAATTY 7 cut(s) 232, 480, 669, 790, 1337, 1563, 1637
XceI RCATGY 1 cut(s) 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 1685
XspI CTAG 5 cut(s) 386, 639, 798, 1067, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.