Rw1G009710
NAC Family

inactive poly ADP-ribose polymerase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
21321106 .. 21327216
6111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009710.1

Sequence Viewer

Length: 1827 bp
ATGGAAGCAAAGATCGCAAAGGCATTGGATAGTGGTCGACCCTGTGTAAAGAGAAAGCGGGCAAAGAAGCCGACCTTGAGTAAGCATCGAGGCTTACCAAAGAAGCCGACCTTGAGTAAGCTCCGAAAGCGAAGGAAATTGTATGGATGCGGAACCAAACTCATGAGGTTTGAATCTCATGTTAGACGACCTTTGCTTTCATCCTATTCAAATTTTACAAGAACTGGTGTGCCACAGCGTCTGATGTTTTACCAGAATGGCGAATGGAACAATTATCCTCAGGTTCTGGTTGATTTGGTTAGGAAAGATCTTCAGATAAAGAAAGCAGCTATCAAGATTGAGTCAAATGGTGATCATTTACTGCTTGATTTTTTGCATATGTTCCAGTTGAACTTGAGAACAGGTGTACAACACCCTATTGCTTGGATTGACGAAGCTGGTAGTTGCTTCTTTCCGGAATTTTACAGCGACGATGAAGATGAGCCAAATGGCAACTGGCGGCATGGAGATTGCAACGATCAGGATCCCTTAGTTGACGAGTGTTGTGGGTCTTGTGAGATTAAACTGCATCTGGAAATTGAAATAGATGGAATGGATCAACCTGAGTTGAAGGAATCTAGTGGGGAGTCAAATGGTTTAGTAAAGAAAATTCAGATTGATCAAATACCTGCCAGTAGTGGTTATGTGATGGAAGTTGAGAACAGTTGCAATGGAGGAGGTGGTCCACAAGTTGATGAAGATATTGAGGATAATCAGCAGATGAGAAAGAACTTAGCTAGAGCAACTGAAACTCTAAATAGAAAGCTGGACTGTGATACTGTTCGTAATATATTTTTTAAAGGAATGAACACTTGTGATGCTGCTGAGCTTGTTGATATATACCGATGCTCAAGTAATCTGATGCAAGCTCGACTGGAACTTTTCGAGAAACAGGTTGAAATTACTAAAACATTTCGTGGAGACGCAAATGTACGATATGCTTGGCTTGCTTCTTCAAAAGGAGAACTTTCGACTATATTAATGTATGGGCTTGGTCATTGTGGACCGGCAGCAATTAAGCCCATTTATGGTACTGGTGTCCATCTCACAGCGGCTAGCTTCTCCAACACCTGTGCAAGTTATTGTGACGTTGATGAAAATGGAGTACGGCACATGATATTCTGTCGTGTCATAATGGGAAATATGGAGTTACTTCACCCTGAAAGTAAACAGTTTCATCCCTGCAGTCAAGATTATGATAGTGGAGTGGATGATCTTCAGGATCCAAAAAATTACATTGTCTGGAATATGAACATCAATACACACATATATCCAGAATTTGTTGTTAGTTTCAAGCTCTCATCCAATATTGAAGGACATCCAATTGGAAGTGAGAAAAAGCATGGAGTTTCAGGGGTTACGACATACGTCCAGGGACCCAAGGGCTTTTTGCAATTACAGTCACCTGCAATTGATAAAGGGAGTAAGATTCATTCAAATTCAGATTGTGGGGGAATGTATGAAAGCGATGGTCAACTGATCTCAATGTCTGGATGTTTCCAGGCTACTACTGGTTCTACCACTCAAAGGACCCCTAAATCACCTTGGATGCCTTTCCCTATGTTATTTGCTGCTATTGCAAGTAAAATTCCTCCCCAGGATATGGAACAAGTTAATGTTCATTATGACTTTTTCAGGGCAAAGAAGATAACCCGTGAGGAATTTGTAGAGAAGCTGAGGTTGACTGTTGGAGATAGTTTATTGAGGTCTACAATAACGGAACTTCAATGCAAGATACCCTTTAAATCTAAGAGTGAATTGGGAGTGCCAAGGTCAGCCCGCCACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

608

Amino Acids

68.41

Weight (kDa)

7.51

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WWE_5 PF23467 72 - 151 1.2e-34 WWE domain
RST PF12174 525 - 589 9.1e-27 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1453
Acc36I ACCTGC 2 cut(s) 676, 1453
AccB7I CCANNNNNTGG 1 cut(s) 1642
AccI GTMKAC 2 cut(s) 37, 1748
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 5 cut(s) 58, 150, 499, 1091, 1819
AclWI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
AcsI RAATTY 7 cut(s) 211, 458, 648, 1316, 1477, 1626, 1700
AcuI CTGAAG 2 cut(s) 296, 1241
AfaI GTAC 4 cut(s) 408, 972, 1072, 1146
AfiI CCNNNNNNNGG 3 cut(s) 1067, 1566, 1642
AjnI CCWGG 3 cut(s) 1410, 1539, 1635
Alw26I GTCTC 1 cut(s) 954
AlwI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
AlwNI CAGNNNCTG 2 cut(s) 241, 286
Aor13HI TCCGGA 1 cut(s) 454
ApeKI GCWGC 4 cut(s) 326, 860, 1049, 1610
ApoI RAATTY 7 cut(s) 211, 458, 648, 1316, 1477, 1626, 1700
AseI ATTAAT 1 cut(s) 1019
AspS9I GGNCC 4 cut(s) 722, 1043, 1415, 1569
AsuHPI GGTGA 4 cut(s) 362, 1187, 1434, 1572
AsuNHI GCTAGC 1 cut(s) 1094
AvaII GGWCC 4 cut(s) 722, 1043, 1415, 1569
AxyI CCTNAGG 1 cut(s) 279
BaeI ACNNNNGTAYC 2 cut(s) 1062, 1095
BamHI GGATCC 2 cut(s) 523, 1261
BbvCI CCTCAGC 1 cut(s) 1715
BbvI GCAGC 4 cut(s) 338, 847, 1061, 1597
BccI CCATC 4 cut(s) 581, 682, 1089, 1502
BceAI ACGGC 1 cut(s) 1163
BciT130I CCWGG 3 cut(s) 1412, 1541, 1637
BclI TGATCA 2 cut(s) 352, 658
BcoDI GTCTC 1 cut(s) 954
BfaI CTAG 3 cut(s) 618, 777, 1095
BfmI CTRYAG 1 cut(s) 1222
BfuAI ACCTGC 2 cut(s) 676, 1453
BglII AGATCT 1 cut(s) 307
BisI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1611
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 6 cut(s) 328, 501, 862, 1051, 1093, 1612
Bme1390I CCNGG 3 cut(s) 1412, 1541, 1637
Bme18I GGWCC 4 cut(s) 722, 1043, 1415, 1569
BmgT120I GGNCC 4 cut(s) 722, 1043, 1415, 1569
BmiI GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1571
BmrFI CCNGG 3 cut(s) 1412, 1541, 1637
BmsI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1578
BmtI GCTAGC 1 cut(s) 1098
BoxI GACNNNNGTC 1 cut(s) 1406
Bpu10I CCTNAGC 1 cut(s) 1715
Bpu1102I GCTNAGC 1 cut(s) 864
BpuEI CTTGAG 4 cut(s) 97, 133, 415, 874
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 5 cut(s) 1411, 1419, 1583, 1635, 1808
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 3 cut(s) 1067, 1566, 1642
Bse118I RCCGGY 1 cut(s) 1045
Bse1I ACTGG 7 cut(s) 229, 385, 500, 672, 918, 1078, 1555
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 715
Bse8I GATNNNNATC 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 3 cut(s) 1412, 1541, 1637
BseDI CCNNGG 5 cut(s) 1411, 1419, 1583, 1635, 1808
BseGI GGATG 8 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1538, 1593
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 3 cut(s) 1067, 1566, 1642
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 4 cut(s) 293, 594, 855, 1706
BseNI ACTGG 7 cut(s) 229, 385, 500, 672, 918, 1078, 1555
BseRI GAGGAG 1 cut(s) 729
BseXI GCAGC 4 cut(s) 338, 847, 1061, 1597
BsiSI CCGG 2 cut(s) 455, 1046
BslFI GGGAC 1 cut(s) 1428
BslI CCNNNNNNNGG 3 cut(s) 1067, 1566, 1642
BsmAI GTCTC 1 cut(s) 954
BsmBI CGTCTC 1 cut(s) 954
BsmFI GGGAC 1 cut(s) 1428
Bsp13I TCCGGA 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 5 cut(s) 58, 150, 499, 1091, 1819
BspCNI CTCAG 4 cut(s) 292, 595, 856, 1707
BspEI TCCGGA 1 cut(s) 454
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1571
BspMAI CTGCAG 1 cut(s) 1226
BspMI ACCTGC 2 cut(s) 676, 1453
BspOI GCTAGC 1 cut(s) 1098
BspPI GGATC 5 cut(s) 518, 531, 603, 1256, 1269
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 1045
BsrGI TGTACA 1 cut(s) 406
BsrI ACTGG 7 cut(s) 229, 385, 500, 672, 918, 1078, 1555
BssAI RCCGGY 1 cut(s) 1045
BssECI CCNNGG 5 cut(s) 1411, 1419, 1583, 1635, 1808
BssT1I CCWWGG 3 cut(s) 1419, 1583, 1808
Bst2UI CCWGG 3 cut(s) 1412, 1541, 1637
Bst4CI ACNGT 6 cut(s) 704, 812, 820, 1212, 1440, 1726
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 5 cut(s) 60, 906, 987, 1096, 1819
BstDEI CTNAG 7 cut(s) 279, 529, 603, 772, 864, 1715, 1788
BstF5I GGATG 8 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1538, 1593
BstMAI GTCTC 1 cut(s) 954
BstMWI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1616
BstNI CCWGG 3 cut(s) 1412, 1541, 1637
BstPAI GACNNNNGTC 1 cut(s) 1406
BstSCI CCNGG 3 cut(s) 1410, 1539, 1635
BstSFI CTRYAG 1 cut(s) 1222
BstV1I GCAGC 4 cut(s) 338, 847, 1061, 1597
BstX2I RGATCY 3 cut(s) 307, 523, 1261
BstYI RGATCY 3 cut(s) 307, 523, 1261
Bsu36I CCTNAGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 1521
BtsCI GGATG 8 cut(s) 152, 200, 1216, 1255, 1340, 1357, 1538, 1593
BtsIMutI CAGTG 1 cut(s) 1822
BveI ACCTGC 2 cut(s) 676, 1453
Cac8I GCNNGC 5 cut(s) 60, 906, 987, 1096, 1819
CaiI CAGNNNCTG 2 cut(s) 241, 286
CciI TCATGA 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 1045
Cfr13I GGNCC 4 cut(s) 722, 1043, 1415, 1569
CseI GACGC 2 cut(s) 227, 971
Csp6I GTAC 4 cut(s) 407, 971, 1071, 1145
CviAII CATG 5 cut(s) 163, 179, 503, 1153, 1382
CviQI GTAC 4 cut(s) 407, 971, 1071, 1145
DdeI CTNAG 7 cut(s) 279, 529, 603, 772, 864, 1715, 1788
DraI TTTAAA 2 cut(s) 838, 1783
Eco130I CCWWGG 3 cut(s) 1419, 1583, 1808
Eco47I GGWCC 4 cut(s) 722, 1043, 1415, 1569
Eco57I CTGAAG 2 cut(s) 296, 1241
Eco81I CCTNAGG 1 cut(s) 279
EcoO109I RGGNCCY 2 cut(s) 1415, 1569
EcoRII CCWGG 3 cut(s) 1410, 1539, 1635
EcoT14I CCWWGG 3 cut(s) 1419, 1583, 1808
ErhI CCWWGG 3 cut(s) 1419, 1583, 1808
Esp3I CGTCTC 1 cut(s) 954
FaeI CATG 5 cut(s) 166, 182, 506, 1156, 1385
FalI AAGNNNNNCTT 8 cut(s) 59, 91, 95, 127, 990, 1022, 1763, 1795
FaqI GGGAC 1 cut(s) 1428
FatI CATG 5 cut(s) 162, 178, 502, 1152, 1381
FauI CCCGC 1 cut(s) 51
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 2 cut(s) 352, 658
FblI GTMKAC 2 cut(s) 37, 1748
Fnu4HI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1611
FokI GGATG 8 cut(s) 159, 187, 1203, 1262, 1327, 1344, 1545, 1600
Fsp4HI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1611
FspBI CTAG 3 cut(s) 618, 777, 1095
GluI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1611
HapII CCGG 2 cut(s) 455, 1046
HgaI GACGC 2 cut(s) 227, 971
Hin1II CATG 5 cut(s) 166, 182, 506, 1156, 1385
HincII GTYRAC 4 cut(s) 38, 535, 1514, 1722
HindII GTYRAC 4 cut(s) 38, 535, 1514, 1722
HinfI GANTC 5 cut(s) 173, 341, 614, 626, 1468
HpaII CCGG 2 cut(s) 455, 1046
HphI GGTGA 4 cut(s) 362, 1187, 1434, 1572
Hpy166II GTNNAC 9 cut(s) 38, 407, 535, 725, 1043, 1208, 1514, 1722, 1749
Hpy188I TCNGA 6 cut(s) 125, 243, 315, 654, 900, 1483
Hpy8I GTNNAC 9 cut(s) 38, 407, 535, 725, 1043, 1208, 1514, 1722, 1749
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 126, 604, 1346
HpyCH4III ACNGT 6 cut(s) 704, 812, 820, 1212, 1440, 1726
HpyCH4IV ACGT 2 cut(s) 1128, 1407
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1616
HpyF3I CTNAG 7 cut(s) 279, 529, 603, 772, 864, 1715, 1788
HpySE526I ACGT 2 cut(s) 1128, 1407
Hsp92II CATG 5 cut(s) 166, 182, 506, 1156, 1385
KflI GGGWCCC 1 cut(s) 1415
Kpn2I TCCGGA 1 cut(s) 454
Ksp22I TGATCA 2 cut(s) 352, 658
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 4 cut(s) 338, 847, 1061, 1597
LweI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1578
MaeI CTAG 3 cut(s) 618, 777, 1095
MaeII ACGT 2 cut(s) 1128, 1407
MaeIII GTNAC 4 cut(s) 1124, 1188, 1396, 1440
MboII GAAGA 6 cut(s) 302, 488, 749, 984, 1247, 1696
MfeI CAATTG 2 cut(s) 1362, 1449
MflI RGATCY 3 cut(s) 307, 523, 1261
MlyI GAGTC 2 cut(s) 350, 635
MmeI TCCRAC 2 cut(s) 1128, 1708
MroI TCCGGA 1 cut(s) 454
MseI TTAA 6 cut(s) 561, 837, 1019, 1056, 1653, 1782
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 2 cut(s) 455, 1046
MspR9I CCNGG 3 cut(s) 1412, 1541, 1637
MunI CAATTG 2 cut(s) 1362, 1449
MvaI CCWGG 3 cut(s) 1412, 1541, 1637
MwoI GCNNNNNNNGC 4 cut(s) 14, 127, 986, 1616
NdeI CATATG 1 cut(s) 378
NheI GCTAGC 1 cut(s) 1094
NlaIII CATG 5 cut(s) 166, 182, 506, 1156, 1385
NlaIV GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1571
NmuCI GTSAC 2 cut(s) 1124, 1440
PagI TCATGA 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 1453
PfeI GAWTC 3 cut(s) 173, 614, 1468
PflMI CCANNNNNTGG 1 cut(s) 1642
PkrI GCNGC 6 cut(s) 328, 501, 862, 1051, 1093, 1612
PleI GAGTC 2 cut(s) 349, 634
PpsI GAGTC 2 cut(s) 349, 634
PpuMI RGGWCCY 2 cut(s) 1415, 1569
PshAI GACNNNNGTC 1 cut(s) 1406
PshBI ATTAAT 1 cut(s) 1019
Psp5II RGGWCCY 2 cut(s) 1415, 1569
Psp6I CCWGG 3 cut(s) 1410, 1539, 1635
PspGI CCWGG 3 cut(s) 1410, 1539, 1635
PspN4I GGNNCC 6 cut(s) 154, 525, 1263, 1416, 1417, 1571
PspPI GGNCC 4 cut(s) 722, 1043, 1415, 1569
PspPPI RGGWCCY 2 cut(s) 1415, 1569
PstI CTGCAG 1 cut(s) 1226
PstNI CAGNNNCTG 2 cut(s) 241, 286
PsuI RGATCY 3 cut(s) 307, 523, 1261
RsaI GTAC 4 cut(s) 408, 972, 1072, 1146
RsaNI GTAC 4 cut(s) 407, 971, 1071, 1145
SalI GTCGAC 1 cut(s) 36
SaqAI TTAA 6 cut(s) 561, 837, 1019, 1056, 1653, 1782
SatI GCNGC 6 cut(s) 327, 500, 861, 1050, 1092, 1611
Sau96I GGNCC 4 cut(s) 722, 1043, 1415, 1569
SchI GAGTC 2 cut(s) 350, 635
ScrFI CCNGG 3 cut(s) 1412, 1541, 1637
SfaNI GCATC 7 cut(s) 94, 137, 577, 847, 875, 891, 1578
SfcI CTRYAG 1 cut(s) 1222
SinI GGWCC 4 cut(s) 722, 1043, 1415, 1569
SmlI CTYRAG 4 cut(s) 76, 112, 394, 889
SmoI CTYRAG 4 cut(s) 76, 112, 394, 889
SsiI CCGC 5 cut(s) 58, 150, 499, 1091, 1819
SspI AATATT 1 cut(s) 1348
SspMI CTAG 3 cut(s) 618, 777, 1095
StyD4I CCNGG 3 cut(s) 1410, 1539, 1635
StyI CCWWGG 3 cut(s) 1419, 1583, 1808
TaaI ACNGT 6 cut(s) 704, 812, 820, 1212, 1440, 1726
TaiI ACGT 2 cut(s) 1131, 1410
TaqI TCGA 5 cut(s) 37, 88, 910, 924, 1010
TatI WGTACW 1 cut(s) 406
TauI GCSGC 2 cut(s) 502, 1094
TfiI GAWTC 3 cut(s) 173, 614, 1468
Tru1I TTAA 6 cut(s) 561, 837, 1019, 1056, 1653, 1782
Tru9I TTAA 6 cut(s) 561, 837, 1019, 1056, 1653, 1782
TseFI GTSAC 2 cut(s) 1124, 1440
TseI GCWGC 4 cut(s) 326, 860, 1049, 1610
Tsp45I GTSAC 2 cut(s) 1124, 1440
TspGWI ACGGA 1 cut(s) 1772
Van91I CCANNNNNTGG 1 cut(s) 1642
VpaK11BI GGWCC 4 cut(s) 722, 1043, 1415, 1569
VspI ATTAAT 1 cut(s) 1019
XapI RAATTY 7 cut(s) 211, 458, 648, 1316, 1477, 1626, 1700
XcmI CCANNNNNNNNNTGG 2 cut(s) 492, 1547
XmiI GTMKAC 2 cut(s) 37, 1748
XspI CTAG 3 cut(s) 618, 777, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.